| mature miRNA: TCGCTTGGTGCAGGTCGGGAC species: Raphanus raphanistrum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161544508|gb|EY916825.1|EY916825 RR3EA72TF RR3(NY) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence TCGCTTGGTGCAGGTCGGGAC EST sequence (targeted fragment marked with yellow): TTTTTCTTTCTTTTGTGATTTTCTTAAGTTTCGGCTCTTCGTCAGGTGAAAAACTAAACTTACGTTCCGATCCGCGTCAAGCGATTTCCGCCATGTCGATGATGACAACTGTCAAAGTGAGCAATGTTTCTCTAGGAGCAACCGATCGTGACCTCAAGGAGTTCTTTTCTTTCTCTGGCGACATTCTCTACCTCGAGACCCTCAGCGAGACAGAACGGTCCAAATTGGCTTATGTCACTTTCAAGGATCTACAAGGAGCTGAAACTGCTGTTCTTCTCTCGGGAGCAACGATTGTTGATTCTTCAGTCATTGTCACTATGGCTCCTGACTACCAACTCTCTCCTGAGGCTTTAGCTTCCTTGGAGCCCAAGGAAAGCAGCGAGTCTCCCCGTGCAGGTGACTCCGTGTTGAGAAAAGCCGAAGATGTTGTCAGCAGCATGCTCGCAAAGGGCTTCATTCTAGGCAAAGACGCAATCGCCAAAGCCAAGAGCGTTGACGAG | |||||||||
gi|154166283|gb|EV537557.1|EV537557 RR2AV84TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence TCGCTTGGTGCAGGTCGGGAC EST sequence (targeted fragment marked with yellow): CTTTCTTTTGTGATTTTCTTAAGTTTCGTTTCTTCGTCAGGTGAAAAACAGAACAAAACTTTAAACGTTTCGATCCGCGTCAAGCGATTTCCGCCATGTCGATGATGACAACTGTCAAAGCGAGCAATGTTTCTCTAGGAGCAACCGATCGTGACCTCAAGGAGTTCTTTTCCTTCTCTGGCGACATTCTCTACCTCGAGACCCTCAGCGAGACAGAACGGTCCAAATTGGCTTATGTCACTTTCAAGGATCTACAAGGAGCTGAAACTGCTGTTCTTCTCTCGGGAGCAACGATTGTTGATTCTTCAGTCATTGTCGCTATGGCTCCTGACTACCAACTCTCTCCTGAGGCTTTAGCTTCCTTGGAGCCCAAGGAAAGCAGCAAGTCTCCCCGTGCAGGTGACTCCGTGTTGAGAAAAGCCGAAGATGTTGTCAGCAGCATGCTCGCAAAGGGCTTCATTCTAGGCAAAGACGCAATCGCCAAAGCCAAGAGCGTTGACGAGAAACACCAGGTTACATCCACTGCATCCGCCAAAGTCGCATCTCTCGACAAGAAACTCGGTTTCACCGACAAGATCAACACCGGAACAGTCGTGGTGGGGGATAAAGTCAGGGAAGTTGATCACAAGTACCAAGTCTCGGAGAAAACCAAATCAGCGATCGCTGCAGCTGAGCAGACGTGAGCAACGCGGGGTCGGCTATAATGAAGAACCGGTATGTTCTCA | |||||||||
gi|158637861|gb|EX747752.1|EX747752 RR1C414TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence TCGCTTGGTGCAGGTCGGGAC EST sequence (targeted fragment marked with yellow): GGGGCACGTGAGAGACTGCCCTTTCAGAATTCAGACCAAAGCACGTGAGACCTCTCTCTCACGTCGTCCGTTTTCCGAGGGTGTGTTAAAACTGGGGTCTCCTCACAGCAAATCCGCTTCCCATAGATTTTTCTTTCTTTCTGTGATTTTCTTAAAGTTTCGTTTCTTCGTCAGGTGAAAATCAAAGAGAAAAAACAAAACTTAAAACGTTCCGATCCGCGTCAAGCGATTTCCGCCATGTCGATGATGACAACTGTCAAAGTGAGCAATGTTTCTCTAGGAGCAACCGATCGTGACCTCAAGGAGTTCTTTTCCTTCTCTGGCGACATTCTCTACCTCGAGACCCTCAGCGAGACAGAACGGTCCAAATTGGCTTATGTCACTTTCAAGGATCTACAAGGAGCTGAAACTGCTGTTCTTCTCTCGGGAGCAACGATTGTTGATTCTTCGGTCATTGTCACTATGGCTCCTGATTACCAACTCTCTCCTGAGGCTTTAGCTTCCTTGGAGCCCAAGGAAAGCAGCAAGTCTCCCCGTGCAGGTGACTCCGTGTTGAGAAAAGCCGAAGATGTTGTCAGCAGCATGCTCGCAAAGGGCTTCATTCTAGGCAAAGACGCAATCGCCAAAGCCAAGAGCGTTGACGAGAAACACCAGCTTACATCCACTGCATCCGCCAAAGTCGCATCTCTCGACAAGAAACTCGGTTTCACCGACAGATCACACCGGAACGGTCGTGGTGGGTGATAAAGTCAGGAAGTGATCACAAGTACAAGTCTCGGAGAGACAAATCAGCGATCGCTGCAGCTGAGCAGACGTGAGCA | |||||||||