| mature miRNA: TCGGACCAGGCTTCATTCC species: Brassica oleracea database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|308721838|gb|DK547925.1|DK547925 DK547925 full-length kale cDNA library Brassica oleracea var. acephala cDNA clone KALE-085M0 TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): CGTCAAACGTTTTTTTAGATTTGTGAAACACACAAACAATTACACCCAACATATTACGAAACACCAAGTTTTTAGATGGTGCACAAGTGATTCATCATGAATCATATCATCGAGATACATATAACCGATGGTAGGAGCACTGGTACAGAAAATCATAAATACATTTGGTACATGCTTTAGTTAAGACAGCGACAATGTTTACGGACTTCACCTTGAGAGCTATTTTTGACATTGAGCTTGCTCATTTTGCGCATGGCCTTTTGAAAATCAAAGAAAAACTTAGTTTGGTTAAGGGCATAGCCATTAACAAGATTCCTCGTCACTGGACTGTTGAATAAGGCTTGGTCTGAAAAGAGGACTCCTGATTTCATCTGAAGCGCATTGAAATAAGCATTGTCGAAATCGTTGCGTGTGGCATCAAGTGGTTGCTCTGCATTGTCACCGGCACTGCAAGTTTTTGAGAGAGTGTTTGCAAAAGAAGAGTCTACTGAAGAATCTAGGGTGATAAGTCTAGCCTTGAAGGATGAACATCGTGCAACTCCAAGGGTATGTGCTCCAGAGAGAGCAACAACATCTTTCGGACTGAAGCCACGTTGGCCAAAAGCCTGAATGAGTTGAGAGGCATTGAAAGAAGGTGGAAGAAGATTTTTTGTATCTTCTATCTTGGATCTTTTACCATCAAATCTTCCTTTAGGTATTTGATAAAATGGACCACCAGCCCAAAAAACAGCATCTCTAGCAGCCATGGCAAGTATATCTGCGCAAGATACAACTCC | |||||||||
gi|308690155|gb|DK520101.1|DK520101 DK520101 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): ATGGATGTAAGCATTGCATTTAGTATTTTTTTTTAAAAAGCAGTTCACTCTTAATCATCAGACAAGAACAGAAACGCAACACATAAAGTTAAAAACCAAATTAATATCATGTCAAGCGCCAAATGAAGCCTGGTTTGATGGATTCTAACCAGAACAGAGCTTTTCAAGCGCCACATTCTCATCTCCACCACTTGATTCAATTGCACTCCTAACCTGAGCATCTCCAAAACCCATCTCGACGAGTCTCTTCACTTTATCCTCAAGAGAAGAGTTCTTGGCGAATGTTTGGGTCCAGTAACGAGCTGTTGATACAAACACTTGATAGTTCTTCATGTACTGTTCAGCAACAACAGCATCTTGAGGGTCTTTAGGCTCTGGTGCAGAGAGTAATGCCTGGACTGAAACAAGAGCTGTCTTCAAAGTAAGAGCTGGACTCCACTGGTCTTTCAAGACATCCAAGCATATTGCCCCGCTTTGGCTACTTATGTTCGGGTGCCAAACTTTGGTTGAAAATTGCATCTTTGGAGGCTCAAAGGGATACCCTTCTGGAATGGTGATATCGATCTGAAAGGTTCCGCCTTCGTAAGGAGTTCCGATTGGACCCGGGATGGTTCCGGTGAGTCGGGTAAGGTTATCGGATTTCGGGCAGACCCGGATGCCCGAGGAGTCTCTGTCTTTCTCGCAATCTTGGAGCTCTTTCTGGACTCGACTTATATCTATCATCTTCGCGATCCGATTGAAAAAAAATAATCCCCAAAAGAGAGAGA | |||||||||
gi|150133872|gb|EE534835.1|EE534835 49RDOAT_UP_015_F05_29SEP2004_037 O. Alba 49RDOAT Brassica oleracea cDNA 5', mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GAGAGGCCGAGGCGCCAGACGCGGAGGACGTCCCACAGGGGAGGAGAAGTGGACCCCAGTGACCAAGCTCGGCCGTCTCGTCCAAGCCGGAAAGATCCAGAAGCTCGAGCAGATCTACCTCCACTCCCTCCCCGTCAAGGAGTACCAGATCATCGACCTCCTCGTCGGTCCAACTTTAAAAGACGAGGTGATGAAGATCATGCCGGTTCAGAAACAGACCAGGGCCGGTCAGAGGACGAGGTTCAAGGCCTTTGTCGTTGTCGGAGACACGAACGGGCACGTGGGGTTGGGTGTGAAGTGCTCCAAGGAGGTGGCGACGGCGATCAGGGGTGGGATTATATTGGCGAAGCTGTCTGTGATTCCCGTGAGGAGAGGGTATTGGGGGAACAAGATTGGGAAGCCGCATACGGTTCCTTGTAAGGTTACTGGGAAGTGTGGTTCTGTTACGGGGAGGATGGGGCCTGCTCCGAGGGGGGCTGGGATTGTGGCGGCTAGGGTTCCTAAGAAGGTGCTTTCGT | |||||||||
gi|308723643|gb|DK464836.1|DK464836 DK464836 full-length kale cDNA library Brassica oleracea var. acephala cDNA clone KALE-024E1 TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GATAGACCCGACCTGGCTGGCCTTCGCGTTTAGTTTTCTCCTTTTCTAATGTGCTCCCTACCGGCTCATTCTCTCGCGTCACCCGAGATGGGACCTGACTCGGCGAATCTTTGCCGATTTCTCTTCAACGAGGCCGGGCTATCGGCTTCCTATCTCTTTTCTCGCTCCGATGATTCGATCAACCGGGGTGGTCTCCGGCTACTCCTTGGCTCGGGAATCGCTCCGATCGGCGGATATGATGGCTCCTCCGGAGAGCTAGGGTTTGAGGCCTGGTCCGATTCGCAGCTTCAGGCGATCCTTGTACTCTCACGATCTCTATTAGCGGACCAAGTCGAACCTATACCTCTGGGTGGTATCCAGGAGTTCTTTCTCAGCTTCTTGGAGAAGTGGAACGTTACACAAAATGATCCGAAATGCCAGATATTTCTGCAAGTGCATTTTGGAGAGTGCTTCCTTGCACAAATGTGGCCAACATTTGTGACTTTCCCGTGGGTCGGTCCTCAGATGAAGAGAAGCCATCTGACAGGCTTCTTATCTTCCTGATGTCTGAATGCATTGCAACTGATGTCCACACTCATTCACTGCGCAAACCCTCTTTCACCTGAATCGCCTGTCTCGTCCCCTGGCTGTCGTTCACCTTGCCTGTGTTTGTCATCTGATTATGGTCTGCTGAGAGCTTGTTCAGCTGACAAGCGTGTTAGATGAGAATACCAATGCTCAGGCACTCATTGATAGATGGCTGTCCTGACTACGAGCTCTGAAGCTGCATGGAAGACTGTCCATGATGTCCAAGTATAGAGATCCATCGGAATTGTTATAGCGGTCGTCGCACTCCCAGATGCTCTTCG | |||||||||
gi|308708196|gb|DK464453.1|DK464453 DK464453 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GATAAACCCTAGCTAGCTTGCCTTCGCGTTTAGTTTTCTCCTTTTCTAATGTGCTCACGAACGGTTCATTCTCTCGCGTCGCCAGAGATGGAAGCTGACTCGGCGAATCTTTGCCGATTTCTCTTCGACGAGGCCGGCCTATCGTCTTCAGATCTCTTTTCTCGCTCCGATGATTCGATCAACCGTGGTGGTCTCCGTCTACTCCTTGGCTCGGGAATCGCTCCGATCGGCGGATATGATGGCTCCTCCGGAAAGCTAGGGTTTGAGGCCTGGTCCGATTCGCAGCTTCAGGCGATCCTTGTACTCTCACGATCTCTATTAGCGGACCAAGTCGAACCTATAGCTCTGGGTGTTATCCAGGAGTTCTTTCTCAGCTTCTTGGAGAAGTCGAACGTTACACAAAATGATCCGAAATGCGAGATAAACATGGAAATGCATTTTGGAGATTGCTTCGTTTCACAACTGTGGCCAACATTTGTGACTTTCCAAGTGGGCAGGTCCTCAAATGAAGAGAAGCCAGTTGACAGGCTTCTTATCTTCCTGATGTCTGAATGCATTGGAACTGATGTCCACACTCATTCACTAGGCAAGCCCTCTTTCCACCTGAATCCCCTGTCTCGTCCCCTGGCTGTTGTTCACCTTGGCTGTGTTTGTCTTCTGATTATGGTCTGCAAAGAGCTTGTTCAACTGCCAAGCGTGTTAGATGAGAAGACCATTGGTCATGCTTTCCTTGACAAGTTGTCATTCTGCCTAAGATTCTGAAGCTGCTTGAAGACTTTCCAAAGATGTTCAAAGTATAGAAATCGACGGGACATTGTTACAAGCGGTAGCCACACTCACAGATGCTCTTCCTAAG | |||||||||
gi|95858199|gb|DY027738.1|DY027738 47RDOAH_UP_025_G04_17AUG2004_020 O. Alba 47RDOAH Brassica oleracea cDNA 5', mRNA sequence TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): AGAATGGGTTCATGAAACACCGAATCAACACTGCAACTGGGACGACCACAGACAACGGCTGTGAATCTGTGGTCGCGAGTGGTCAGCAACGTCAGCAGCAAAACCCGACACATCAGCATCTTCAACGTGATGCTAACAACCCAGCTGGTCTTCTCTCGATTGCGGAGGAGACCTTGGCGGAGTTCCTTTGCAAGGCTACAGGAACTGCTGTCGACTGGGTTCAGATGATTGGGATGAAGCCTGGTCCGGATTCGATTGGCATCGTCGCTGTTTCACGCAACTGCAGTGGAATAGCAGCACGTGCCTGTGGCCTCGTGAGTTTAGAACCCACGAAGGTTGCTGAAATCCTCAAAGATCGTCCATCTTGGTTCCGTGACTGTCGAAGTGTGGAGACTCTGAGTGTTATACCCACTGGAAATGGCGGTACTATCGAGCTCATCAACACTCAGATTTATGCTCCCACAACACTAGCAGCAGCTCGTGACTTTTGGACCCTGAGATATAGTACAAGTCTAGAAGATGGAAGCTATGTGGTTTGTGAGAAGTCACTCACTGCTGCAA | |||||||||
gi|308691696|gb|DK529166.1|DK529166 DK529166 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCAAAAAGGGGGGGGAATTTTGAAACCCTGGGTTACGGAAGTAAAAAACCAAAAAAAAAATTTTGGGGGGGGGGGAAGGAATTAAAAAAAAAATAAAAAGCCGGCCCCCCTTCCCCCAATTTTGCCCCAAAAAAAAAAGTTCTTCTCTTTACCCCCTGGAAACTTTTCCCCCCTTTTCAAAACCAAAAACCCCAACCAAACCCCCCACCCCCGGCCAAAGATTCCTTCCCCTCCAACTTGATTTTCCGCGTTTCAACCCCCCCAGGACCTTGCCCTATTTTCGGCTTTAGGGAGAAACCCTTTTTGCCACAAAAACACTTAAGTGGTTCAAAGGTTGGGTTATCTTCAGGGCATTTTGTTTCCCCGCCTTCGTATGGGGGCTTTGCCCATAACACGGGGTAAACTCCCGCAAGTAAAACTGCCACTCCATCACCCCCTCTAAGAAACGTCTCGTGGGCGAGACAAAAGACCTCATTAGGGAGCTAAGGCCACGATAGGGGGGTGAAAGCGTGGCGAAGATGGCGCTCCTTTCTCTGCATCAATAAGTCCTTGAGGGAGAAAGCTTGGTTCGACGAATTTTTCCGGCGTTACGGACGCGAGGAGATCTTGTCAACGTATGTTCAAAGCTGAGGATTATTGTTCTATCGAGGGTCATGCTAAGGACTGCATCGTCATGAAACAACCATGGTTGATAACAAGACATGGGCT | |||||||||
gi|308711137|gb|DK493261.1|DK493261 DK493261 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): GGTCTTGTTGTGTTCTTGCTTGTCCTCTCCTTCTCGGAAAATCTTTACTTTACTTTTTCAGCATTTTCCTCTCTCTCTCTCTCTCTTTCTCTTACAAAGAATCTCGAGACTAGTGTCTCTCTCTCTCTCTACTACATATCTCCCTTCCCTTTGGTCTTTTTTCCACTTTCCATCTTCTTCTCTCATGAACCATTCTCTCATGAACTTCATACAAAGCTCTCTCCACTCAGAGGGCTTACCCGTTTGAATCAATACTTTAAAAGAGACTCTCCTGAGAAAGGATTTGACTCCGGCAAGTACGTGAGATACACGCCTGAGCAAGTCGAAGCTCTCGAGAGAGTTTACGCCGAGTGCCCTAAACCTAGCTCTCTCCGTAGACAGCAACTCATTCGAGAATGCCCCATTCTCTGCAACATCGAGCCTCGACAGATCAAAGTCTGGTTCCAGAATCGCAGATGTCGAGAGAAGCAGAGAAAAGAATCTGCTCGGCTTCAGACGGTGAACAGAAAGCTGAGTGCTATGAACAAGCTTTTGATGGAGGAGAATGACCGTTTGCAGAAGCAAGTCTCCCACTTGGTTTACGAGAATGGGTTCATGAAACACCGAATCAACACTGCAACTGGGACGACCACAGACAACGGCTGTGAATCTGTGGTCGCGAGTGGTCAGCAACGTCAGCAGCAAAACCCGACACATCAGCATCCTCAACGTGATGCTAACAACCCAGCTGGTCTTCTCTCGATTGCGGAGGAGACCTTGGCGGGGTTCCTTTGCAAGGCTACAGGAACTGCTGTCGACTGGGTTCAGATGATTGGGATGAAGCCTGGTCCGGGATTCGATTGGCATCGTCGCTGTTTCACGCAACTGCA | |||||||||
gi|308699706|gb|DK540886.1|DK540886 DK540886 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGCAAAAAACCCGAAAAAATTATATAAACAAAAATAAAATACACCCAGCATGGGTCCCACGACTGAACCCACCCCCTGGAAAAAGGCCTGGTCCCATGGGTAGGCATCATCAAAAGGGCCAAAGGCCTTAAAAAAAAAAAAAAAAGAAACAATTTTAAAAAACCTTACCCCCCATGAATGGGTTTTCTCTTACAAATGGCTTTTGGGCTCCCTGTCCCCCTGAAGAATAACAATACTTTCTCTGGTCCTCTTGGGGCCTTGTTCCCCGTTCTCCCTACTGGGAAGTCCCTTTCCTTCAAAAAGATTTTCAGGAGGGCCCCCCCTTTTTTTCTTTTTGGTATGCATCATCTGAAACAAATCCTTTACCCTTTCACCCTCTTCCGCATTTTTACTGGGCATGGTCTTTGCCAAGGAAACAAGATCCGGCCTTGTAATCCTTTGGTTGCGTTTCTCTCACAGCTAGTTCACATTTCAGTCTTCATGAATCTTCTCAACATCCAATCTTCATGTCTTCCTACACTCCTAACCTCTCGTTACTACTAACCGACCTTCAGCTAGCATTTGCAATTGGCACCACGTAAATCGGAATGAACGCTATGGATCAATCTAGAAGGTCCACTCCTAGTCTAAGTATGGACTCCAC | |||||||||
gi|308698880|gb|DK541271.1|DK541271 DK541271 full-length kale cDNA library (flowers) Brassica oleracea var. acephala cDNA clone TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): ATTAAACCAAATTTAACCGATACGCTCACAAAATCAGTTTACAATAGTATACCGGTTTGAATCAGTCTATTTGACATGGAAATACAGAGTTAAATGTCATGCAAACTGAAAGACGCAAAACAGAAAAAGAAATGGAGCCCGTAATTTAGCCTCAAGCCAACGCTAACACTCTTCCAGGAAAGCACGTCCGAGATTTGTTGCTAGAGCGAGTCTCACAGAACCCACAGCTTGAGCCGACAAATCAGGTTCTATGAAGCCTGGTCTGATCTTTGCAATGGATGCTTCCTGCAGTTTGTTCAACATCAGGTTGGTCTGTGCTACATTCAACAGCGAACGCTCAGGCCAATTCAACAGCTTCAATGAATCATGCAGCAGAGGAAGCCAGAAGCGTTGAGGAGTAGAGGGGCTCTTCATTAGCGATACAAGTCTCTCCACAGCTTCGTGAGCCGCATCTATAGCTTTTCCATCCTTGACGAGATTCAGCGATCTCTTGAAATCTCTATACTTGTGAAGAAAATCAAGACCACCAGAGATCTGCGAGTCGGAACCCAGCAGTTCGACCAGGCCTTCCCATTGCTTGAGACTTTCATCAGACAGTGACTTTCCAACAGAATCAAACAGCTGTTGGGAAATCACTTTGAGACAGTGCTCGTCCCGGGCTTGCTGAAGCCAGAAAATCCCAGACCCTTTCCTCCCATGTTTCCAGTGATGCACTCCAGAGATCTTCATAAGTTTTGCGCTGACATAACTAAGTTCATATAGACGGCAAATCTCTAGGCTCTTAATAAGCAACTGATTGTCTTGAACTGGCTGCCTATAGAAC | |||||||||
gi|308621799|gb|DK545017.1|DK545017 DK545017 full-length kale cDNA library (seedlings) Brassica oleracea var. acephala cDNA clon TCGGACCAGGCTTCATTCC EST sequence (targeted fragment marked with yellow): CATACAAAATTAAGTTTATTCCGAGACTAAATGAAATATTTTTACATTTGAGTGGTATATAAAATGATTACAGTTTCATACAGTGTGAGTAATCTAGAAGGAGAAAGAGATATAGAAATTCTAGCTCTTGACCACAGCTCTTCATCCCATGCAAAAAGTATCTGCATAAGTTAATAAAAGGGTTAGTACAATATTGTCATCGCATATATAACTCTTCTTAACTCCAGAAGAGGATCCAGAAAACCCTAGTTATGTCATAAATAGTTAATAAAGAATTAAGATTCAAATCTCGTAGATCTGGTATGGTAATAAACAGACAGATCTGAAACTAGACTATCATCATCATGCATGACCAAGAAGATCCAATCTTATAACTTAACTCTTCCTGACAATAAAAAAACAATCATATCAGAATCATAGCAGCGCAGAAAAACTCAAAATACTATAAACATATGTAGAAAAGGTTGTAATGATGAAACTTTTCAGATTCCAAGAGTAAGAAAGTCAGATTCTTTCATCATTACACCAATCTGCAAGTACCTGAAAACTTTTATTTTCCCTACTGGTCCCAAGCACACGTAGATAAAAACCGTGTTTAATGCAAATATTAATCAATAAAACGTGTAACTGAATCAGAGAAAGCAAATTTAAAATATCAAAACCTTTAACATCGGTTCAATCCAAAGATCTGAAACCCTAAATTGAGAAAAATGGAAGAATAAGGAACAATGGAGTATTCAGGAGCAATAATTGGGGGGAATGAAGCCTGGTCCGAC | |||||||||