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mature miRNA: TCGGACCAGGCTTCATTCC
species: Taraxacum kok-saghyz
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|294708094|gb|GO663707.1|GO663707 TKN010G06 Taraxacum kok-saghyz root cDNA library (TKN) Taraxacum kok-saghyz cDNA clone TKN01

TCGGACCAGGCTTCATTCC
|||||||||||||| |||
AGCCTGGTCCGAAG-AAGT

EST sequence (targeted fragment marked with yellow):
GTTAGCCTAATCGAAGAACACCCAGTGAGACCATTTGTAAACCCAATACTATTAGTCGAAAACTTTTGTTCGCATCAAATCTCAAGATTCAGATCCCTGAATCGCCCACCGATTACGGGATCAAGACACGGAGCTCGCAGTTTTCCGGTACACCTTCTTCGACGCCGACGGGGTTTGGATCTCCCCGAGGTTTTACGGGTCAGTTGTCTTTGAGGGAAATGGAGCTTTCAGAAGAGTATACCCGAGTGATTTCACATGGCCCGAACCCGAAAACAACCCATATTTATGATAATTCTGTTGTGGAGAGCTGCTGTGGGGTAATCGGGTCTCCCGAATTGAAGAAGCCTGGTCCGAAACCACCATGTGAGAGTTTTTTAAGCTTTTGTCATACCTGCAACAAGAATCTTGAAGAAGGCGCTGATATCTATATTTACAGGGGTGAAAAGGCTTTTTGTAGTGACGAATGCAGATGCCAAGAAATGGTTTTGGATGGGTTGTTGATGAACTCATAATAACTTTTATTGAAATAACGATTTTGCCCTTTCTTCTCTTGTATGTTGAAGTCCTAGGGATTTATAGAGGAGAAGGTGGGAATTTTGGTAATTGGTATGTTGATTTGATTGTATTGTATTGGATTGTAATGTTTATCAAATAGGATGTTTTCTTTTTTGATTTTTAAGTTTAGCCTTTTGTTTTACCA