| mature miRNA: TCGGACCAGGCTTCATTCCCC species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|109887447|gb|DW516416.1|DW516416 GH_TMIRS_201_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): AGGGCATTCTACGGATTTCAAATTGCTATGGAGAATATTCATTCTGGAATGTACAGCTTGCTTTTGGAGACATATATCAAGGATTCCAAAGAAAAACATCGATTGTTCAATGCTATTGAAAGCATCCCTTGTGTCAGTAAGAAGGCTAAATGGGCTATCGATTGGATTCAGAGTTCCACTTCATTTGCAGAGAGACTTGTGGCTTTTGCATGTATTGAAGGAATCTTCTTTTCTGGAAGCTTTTGTGCCATTTTCTGGCTTAAAAAGAGGGGACTGATGCCTGGTTTGACATTCTCAAATGAGCTTATATCTAGAGATGAGGGGCTTCACTGTGACTTTGCTTGCCTTCTTTACGGGTTGCTGCAGAAGCAACTTAAATGGCACAAAGTCCATCATATTGTTCATGAAGCAGTGGAAATCGAGACTGAGTTCGTGTGTGAAGCTCTTCCTTGTGCACTTATTGGCATGAACTCGACACTCATGAGCCAGTACATTAAGTTCGTTGCTGATCGTCTTCTGGTTTCATTGGGCTGTCAAAGAAAGTACAGCGTCGAAAATCCCTTTGATCGGATGGAATTTATATCTTTACAAGGAAAAGCCAACTTCTTTGAGAGGAGGGTTGGTGATTATCAGAAAGCATCTGTAATGGTCAGTCTTTCAAAATGGAGGTAAAAACTA | |||||||||
gi|84173390|gb|DR462038.1|DR462038 CM103G06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GCATGTTGCGGTTGCCTTGTGCAGAGAGGCAAAATTTGACATGATAAAGGAACTGGTAATTTTCTCTCTTGAAGCGAAAAGTTAAGCCCCGCTATGCCATATGTGACCCATTTATTGTGGCTTTGTGTAAAGCAAATAGGATTGAAGATGCGTATTTATTACATGGTGAAGTTTGTAGAATAAATAAAGATATTGCACGTGAAACTTACTTTCACTTGATTCATAGTTTTTGCCGGTCGAATAGAGGAGATATTGCTGCAACACTTTTATTTGAAATGCAGGAGAAGGGTCATAAACCAACTAGAACATTGTTCAGATCTGTTATCTGTTCCTTGTGTGATATGGAAAGTCCGGAAAACCAGTTCTTTAAAATGTTGGAGATGCAGTTATCTCATTTTGAGCCAGAAGCTCGTATTTTTAACTTTTTCATCTCCGGAGCTGGTTATGCCAAAAAGCCTGAACTAGCTAGAGAAGTCTTTGAGATGATGCAAAGAAGTGGGATTAAGCCTGGTCTGAGGTCCGACATCAGTATATTGGTTAGTTACCTACAGAATAACAGAATTTCTGATGCTCTAAACTTCTTTAATGACATACGTCAGAGAAGAAAGATAGGGAGAAAACTATATAGTTCCATGATAGTTGGTCATTGTAAAGCTGATCAGGCAGAATATGCACTGAGTTTCATGAACGAAAGCAGGGTTATAATGTTTTTCAAGCATGGAAGGTATGAGTTCTTTAAAGTGGTGGTTCGAGAAAGCACGTGTGCGTGAATGGTTAGGTGGGAATCGGGGATTCCCTTTGGGTGTTTTCTTCTTAAAACAGGGGGGGTTACGGGGGAAACATTTGGGCGGGAAGTTCATTATTGGGGCCGCTCTAAAA | |||||||||
gi|164343589|gb|ES832414.1|ES832414 UFL_412_03 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GGCACGAGAAACACCCCCATCTCACCCCTCCGTTGCTATTTTCAATCAAGAAACTCTCCGGCAGCAGTCTTGATTTGGTTTCCAGTTAGACTCTGAGATAGAAGAGATGGCAGTGAACTAGACGACGGCGTTGAAGATGTAGAGAAAAACAACGAAAAGAAGCATCACGCCTCCAAGCTGTGAATAGGAAGTTGACAGCTATGAATAAACTGTTGATGGAGGAGAATGATAGGTTACAAAAGCAAGTTTCACAGCTTGTTTATGAAAACAACTATTTCCGCCAACAGACTCAAAATACGACTTTAGCTACCACGGATACAAGTTGTGAATCAGTAGTGACGAGCGGTAAACACCATTTGACTCCTCAACATCCGCCAAGGGATGCCAGCCCTACAGGACTTTTGTACATTGCAGAGGAAACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTTCGGATTCTATTGGAATCGTTGCTATTTCTCATGGTTGCAGTGGTGTGGCAGCACGTGCATGCAGACTTGTGGGACTGGATCCTACAAGAGTCACTGAAATCCTTAAAGATCGGCCTTCATGGTATCGTGATTGCCGAGCTGTGGATGTTACAAACGTGTTGTCCACTGGAAATGGTGGAACCATTGAACTGCTTTATATGCAGTTTCTTCTAGTCAAGTTTGCAAAAATGATTAGTGTAACTGTATCCCAGTTTTTGGAGGCGGGATGTCACTCATGTGACTGCCTCTACAGATGAGAATGGTGCATGCACTAGGACCCTAAAAGTTCTCATGGCAATTTTAAACGGGAAGGGGGTCTTAAATAAATTACGTCCGGAGATTTTCAGGGAACCAACCGACCCCTTGTATAATAATGGCGCGACTCCGGAGCGGGAAACTACTTTGAATCCACTACCTATAAAGCTTGATGGGTTTTGATCCGGGCAAAGGGGTTATATTTTTCGGCTGGCTTCAAATTCGAAAAAAATTTGTTAAATCCTGGCACTTTCTCGGGCAAGGTCGTTTTTGATAGCCAGGGTTAATTTTCCCATCCCCTTGGATTAGCAAATTCTAATTTAGTTTAAATTTCCCTTCACTTTGGAATAAGCAAAATTTTTTTTTAAATTTACATTTTTTTTTTAATATTTTAAATTTTTTTTCCGGGGAAAATTATAAAAAAAAATTTTTAAAAAAAACCCATTTTTTT | |||||||||
gi|109862018|gb|DW490995.1|DW490995 GH_RMIRS_083_F02_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GATACAAGCTGTGGCTCAGTGGTGACAAGTGGTCATCAACACCATTTGACTCCTCAGCATCCTCCAAGGGATGCCAGTCCTGCAGGACTTTTGTCTATTGCAGATGAAACTTAACAGAGTTTTTATCAAAGGCCACTGGAACCGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCACGTGCATGCGGGCTTGTGGGACTTGATCCTACCAGGGTCGCTGAAATCCTTAAAGATCGGCCGTCATGGTTCCGTGATTGCCGAGCTGTGGATGTTATAAACGTGTTGTCCACTGGAAACGGTGGGACCATTGAACTGCTTTACATGCAGCTCTATGCGCCAACAACTTTGGCACCAGCTCGTGACTTCTGGTTGCTGCGCTACACATCTGTTTTAGAAGATGGTAGTCTTGTGGTATGTGAAAGATCACTTAACAATACTCAGAACGGTCCGAATGTGCCGCCAGCAGCGAATTTCGTTAGAGCAGAAATGCTGCCTAGTGGTTACCTAATTAGGCCTTGTGAAGGCGGTGGATCCATCATTCACGTTGTTGATCACATGGATTTGGAGCCCTGGTTGTCTCGTCCTCTGCCTGATG | |||||||||
gi|164276366|gb|ES808873.1|ES808873 UFL_236_30 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GGCACGAGTAAAGATGGGACAGCTGAGTGTGTTGACTGGTAACAATGGCGAAATTCGTGCTAATTGCTCGGTGAGGAATGCTGATAATAAGTCGTACTTTGCGTCTGTGGTGGAAGAGCTACCGGTGGAGGAAGCTTGGTCTGACCTTTAAACACTTAATAAGCTATTCAAGCATGTAACATGTTAACTATGTGACTGTTTAGCATTTAATGTATGACAGTGGGGCGACTGAGGTTTGTATTTTACTGTGTATGGGAGATTATGTTCTACAGTTTTTACTCGTTTTCGTTTCGGGTTTTATTGAAAAAAATTGCAGACTTTTACTCAAAAAAAAAAAAAAAAAAACTCGCTCGTGCCGAATTCGGCACGAGGAATGAAGGAGGGTCAGAATGATATCTACTACATCACTGGTGAGAGTAAAAAGGCAGTTGAGAACTCTCCCTTCCTTGAGAAGCTGAAGAAGAAGGGTTATGAGGTCCTTTACATGGTTGATGCTATTGATGAGTATGCTGTCGGACAGCTCANAGAATTTGAGGGCAAAAAGCTTGTGTCAGCTACCAAGGAAGGTCTTAAACTTGATGAGAGTGAGGATGAGAAGAAGAAGAAGGAAGCTTTGAAGAAAAAGTTTGAGGGTCTTTGCAAGTCATCAAGGATGTGCTGGGTGACAGGGTTAAAAAGGTGGGGGTTTCTGATCGGGTGGGTGACTCACCTTGCTGTTTAGTGACTGGCGAGTATGGTGGAATGGAAACTTGAAAAGAATCATGAAGGGCCCAGCTTTGAGGGAAAACACCATGCCTGGTTACATGTCAAGCAAAAAAACATGGAAATCAACCCGGAAAACCCCATTCTGGGAAGAGCTTAAAAAAAAAACCCAATGCCAAAAAAAATGGAAATTTTTTGAAAGGACCTTGTTTTCCTTTTTTTTCAAAATGGGCTTCCCTCCCTCTGGGGTTTCACCTTTGATAACCCTACCACCTTTGGCAAAAAAATCCCCAAGAATGCTGAAACTTGGCTTGACCATTTATAAGAATGCAGGTGAAGGTGAAGGTGATGCTGATTTGCCCCCATTGGAGGATTCTGATGCCGAAGGGACAAAAAGGGGGAAAGTTGATAAACCCAAAATGTTTTTTAAAAAAAAAAATTTTTTTTATTTTTTAAAAAACCTGTATACTTTTTTTTTTTTTTTTTTTTGGGGGGTTTTTCTTTTTTTTTTTTTTTTGGTGTTATTTTTTTTGTGGGAGAACCCCCTTTAAAAAAAAAAAAAGAGGGGGGTTTTTTTTTTTTTTGTGGGTGTTTTTTATTAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164251877|gb|ES849561.1|ES849561 UFL_659_33 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GGCACGAGGTTCGTTGAGAGATCAGGAACAGAGAGTAATGGGAAAAGAAGAAGTGGAAGAAGAAGAGAAGGAAGAGGAAGAGCCTATATTAAAACAACAAAACCAAAGGTTTTGTATGTTTCCCATTACCTATCAACCACTTTGGGAGATGTACAAGAAGGCTGAGGCTAGTTTTTGGACTGCTGAGGAGGTTGATCTCTCACAAGACGTGCAGCATTGGGAAACCTTGTCTAGCTCAGAAAAACACTTCATAAGCCATGTGCTGGCCTTTTTTGCTGCATCTGATGGGATAGTTTTGGAGAACTTGGCTGCAAGATTCCTAAATGATGTTCAAATTCCAGAGGCCCGGGCATTCTACGGATTTCAAATTGCTATGGAGAATATCCATTCTGAAATGTACAGCTTGCTTTTGGAGACATATATCAAGGATTCCAAAGAAAAACATCGATTGTTCAATGCTATTGAAAGCATCCCTTGCGTCAGTAAGAAGGCTAAATGGGCTATGGATTGGATTCAGAGTTCCACTTCATTTGCAGAGAGACTTGTGGCTTTTGCATGTATTGAAGGAATCTTCTTTTCTGGAAGCTTTTGTGCCATTTTCTGGCTTAAAAAGAGGGGACTGATGCCTGGTTTGACATTCTCAAAATGAGCTTATATCTAGAGATGAGGGGCTTCACTGTGACTTTGCTTGCCTTCTTTACGGGTTGC | |||||||||
gi|109884922|gb|DW513892.1|DW513892 GH_TMIRS_177_B02_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): TTAGCTACCACGGATACAAGTTGTGAATCAGTAGTGACGAGCGGTCAACACCATTTGACTCCTCAACATCCGCCAAGGGATGCCAGCCCTGCAGGAGGAAACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTCAAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCTATTGGAATCGTTGCTATTTCTCATGGTTGCAGTGGTGTGGCAGCACGTGCATGCGGACTTGTGGGACTAGATCCTACAAGAGTCGTTGAAATCCTTAAAGATCGGCCTTCATGGTATCATGATTGTCGAGCTGTGGATGTTACAAACGTGTTGTCCACTGGAAATGGTGGAACCATTGAACTGCTTTATATGCAGACGTCAGGAGATTTTCAAGGAAACAACAGACCACATGTATAATAATGCAGCGACTCAGGAGCGGGAAACTACTTTGAATCAGCTACTAATAGAGCTTGATGGGTTTGATACTGGCAAAGGTGTTATATTTTCGGCTGCTACAAATCGTAGAGATTTGTTAGATCCTGCACTTCTCAGGCAAGGTCGTTTTGATCGTGAGGTTAATTTCCATCACTTGAATAG | |||||||||
gi|164257503|gb|ES817127.1|ES817127 UFL_284_14 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GGCACGAGGTTCGTTGAGAGATGAGGAACAGAGAGTAATGGGAAAAGAAGAAGTGGAAGAAGAAGAGAAGGAAGAGGAAGAGCCTATATTAAAACAACAAAACCAAAGGTTTTGTATGTTTCCCATTACCTATCAACCACTTTGGGAGATGTACAAGAAGGCTGAGGCTAGTTTTTGGACTGCTGAGGAGGTTGATCTCTCACAAGACGTGCAGCATTGGGAAACCTTGTCTAGCTCAGAAAAACACTTCATAAGCCATGTGCTGGCCTTTTTTGCTGCATCTGATGGGATAGTTTTGGAGAACTTGGCTGCAAGATTCCTAAATGATGTTCAAATTCCAGAGGCCCGGGCATTCTACGGATTTCAAATTGCTATGGAGAATATCCATTCTGAAATGTACAGCTTGCTTTTGGAGACATATATCAAGGATTCCAAAGAAAAACATCGATTGTTCAATGCTATTGAAAGCATCCCTTGCGTCAGTAAGAAGGCTAAATGGGCTATGGATTGGATTCAGAGTTCCACTTCATTTGCAGAGAGACTTGTGGCTTTTGCATGTATTGAAGGAATCTTCTTTTCTGGAAGCTTTTGTGCCATTTTCTGGCTTAAAAGAGGGGACTGATGCCTGGTTTGACATTCTNCAATGAGCTTATATCTAGAGATGAGGGGCTTCACTGTGACTTTGCTTGCCTTCTTTACGGGGTTGCTGCAGAAGCAACTTTAATGGCAAAAAGTCCATCATATTGTTCATGAAGCAGTGGAAATCGAGACTGAGTTCGTGTGTGAAGCTCTTTCCTGTGCACTTCTTGGCATGAACTCGACACTCATGAGCCAGTACATTAAGTTTCGTGCTGATCGTCCTTCTGGTTCATTGGGGCTGGCAAAAAAATACAGCGTCAAAAATCCCTTTGATGGATGGGATTAATATCTTTAACAGGAAAAGCTAACTCTTTGAAAGGAGGGTGGTGATTATCAGAAGCATCTGTATGTCAGCCCTCAAAACGGAGTAAAACTACTTTTTCAACTAAACGAAAACTTCTAATCACCCCCATCAATCTATTTCCCTTTGTTGCGCCCTGCCAGGTTTATAAAAAAGGCTGGCCGTTTTGGGTTTAAAAAAATTCTTTTGAGATAAGGTTGTTTTTTCTTTTATATATCTTTTTTTTTTTCCCCAAAATTTCCAAAACACAACATTTCCCCCCCCCCGCCCACAAAAAAAATCTATATAATCTTGGGTTTTTTATGTGTTTTTTTTTTTTCCCGTGGGGTTTTTTATTATAAATTTTTTTTTTCTCAGGGGGGGGGAAAAAAATAAAA | |||||||||
gi|164264305|gb|ES813647.1|ES813647 UFL_176_50 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GGCACGAGGGCGGTGACGAGTGGTCAACACCATTTGACTCCTCAGCATCCTCCGAAGGATGCCAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAAACTTTAACAGAGTTTCTTTCATAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTTGCAGCACGTGCATGTGGACTTGTGGGACTAGATCCTACAAGAGTTGCTGAAATCCTTAAAGATCGGCCTTCATGGTACCGTGATTGCCGAGCTGTGGATGTTATAAACATGTTGTCCACTGCTAATGGTGGAACCATCGAACTGCTTTATATGCAGCTCTACGCGCCTACAACATTGGCACCAGCTCGCGACTTCTGGTTGCTGCGCTACACATCTGTTATGGAGGATGGTAGTCTTGTGGTATGTGAAAGATCACTTAACAACACTCAAAATGGTCCAAGCATGCCGCCAGCAGTAAATTTTGTGAGAGCGGAATTGCTGCCTAGTGGTTACCTGATTAGACCTTGTGAAGGGGGTGGTTCCATCATTCACATAGTTGATCACATGGATNTGGAGCCTTGGAGTGTTCCTGAAGTGTTGCGGCCCCTTTACGAGTCCTCAACTTTGCTTGCTCAGAAGACACAATGGCGGCTTTGCGTCATTTGAGGCAGATTTCTCAGGAAATATCTCAGCCGAATGTTACTGGTTGGGGGAGAAGACCTGCAGCTCTGCGTGCACTTAGTCACAAATTGAGCAAGGGATTAATGAGGCTGTTAATGGGTTTACTGATGAAGGATGGTCAATGCTGGAAAGTGACGGCGTTGATGACGTTACCCTCCTGTTGACTCGTCTCCTGGAAAGATGAATGACATAAATTTTCTTATAGTAATGGATTCCTTCAAGGGAAATGCCGGTTCTAGTTCCAAAACTTTCAGTTTTTGCATAATGTGCCGCCGCAATATTTCTAAATCTTGCGGAAATTCCACAAATGGGCAAAAGGGTATTAATCTTTATCTGCGGCGTGCCAACCTGGACCTGTACTTGCCGGTCTCAGGGGAATTTGGGGGTTAATTTTTCCCTGCCCCCCAATGACTTAAAATTCGGAGTTTTACCCAAAGGGGGCCATACAAATTCTTCCATGATTTCCCTCCCCTTTTGGGTTTAAAAATCCCCCCCGTTAACTCTGCCCCGGGTTCCCCTGAACGCCTATCCCGGGCCACCCCCCTTTCGGGGGTCCCCACCCCCTCCCCCCCTTATGGGGCCACCCCGTATTTCGGGACAAGTACAATTCTT | |||||||||
gi|164317275|gb|ES808067.1|ES808067 UFL_292_70 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GGCACGAGCCAAAATAGAAGATGTAGAGAGAAACAGAGAAAAGAGGCATCACGCCTTCAAGCTGTAAATAGGAAGCTGACAGCAATGAACAAGCTTTTGATGGAGGAGAATGATAGGTTGCAAAAGCAGGTGTCACAGCTGGTTTATGAAAACGGATGCTTTCGCCAACATACTCAGAATGCTACACTTGCAACCAAAGATCCTAGCTGTGAATCGGCAGTGATGAGTGGTCAACAACGTGAAACACATCAGCATCCTCCAAGAGATGCTAGTCCTGCAGGGCTTTTGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCGAAGGCCACTGGAACTGCTGTAGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATAGGAATCATTGCTATTTCTCATGGTTGCCCTGGAGTGGCAGCACGTGCCTGCGGCCTTGTGGGTCTTGAACCTACAAGAGTTGCAGAACTCCTCAAGGATAGGCCTTCGTGGTTCCACGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCTACTGCCAATGGTGGAACCATTGAGCTGCTGTACATGCAGCTCTATGCGCCGACGACGTTGGCGCCTGCTCGTGACTTCTGGTTATTGCGTTATACTTCTGTTCTAGAAGATGGAAGCCTCGTTGTCTGTGAGAGATCTCTGAAGAATACTCAAAATGGCCCTAGCATGCCTCCAGTCCAGCATTTTGTGAGAGCAGAAATGTTGCCAAGTGGATACCTTATTCGACCTTGTGAAGGGGGTGGGTTCATCATACATATTGTTGATCATATGGATTTGGAGCCATGGAGTGTGCCTGAAGTGTTGCGCCCACTTTATGAATCATCAACAGTGCTTGCTCAGAAGACAACAATGGCAGCTTTACGAACACTGAGGCAGATAGCTCAGGAGGTTTCTCAGTCTAATGTGACTGGTTGGGGACGACGGCAGCAGCTTTACGGGCTCTTACCAGAGGTTGACAGGGGGTTTAATGATGCTGTGAATGGGTTCACTGATGAAGGTTGGTCAATAATGGGAAATGGAGGGCATGGATGAAGGTAACCATTCTTTGGGGACCCCTTCCCCGGGAAAACCAAGGGGGCCCCAACCTTTTCCTTTGGAAAGGGATTTCCCTTCTGCTACCAAGTGGCAGGGGTATGGGGCTAAAGGCCCTCCCATGCCTTTTTTAAAAAAGGGTACCCCCCCGGTTCTCACTTTTTTTTTTTTTTTTCCCTCGCGGGAGAACAAAAAAACAAAAAAAAAGGGGGGGTGGACAAACAACAACATCTGTTAAGCCCCCCC | |||||||||