| mature miRNA: TCGGACCAGGCTTCATTCCCC species: Physcomitrella patens database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208398860|gb|DC920808.1|DC920808 DC920808 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): CTGCAGCTCAAGATGAAGGGATTCCAAGCACTGGTGCTGATCGGAACTCTCATGCTCGTCGCTTGCAGCTGCTCAGCTGCCAGAATTTTAGTGGAAGAGAATCGTGCAGCATCCCAGATGAAGTTCAAGGGTCCATCGCCAACCGAGAAGCCCAAATTGCCGCCGCTGCCCACTTTGCCTCCCAAGCCCAAGCTCACATTGCCGCCGCAGCCCAAGCTGCCGAGCTTCGGGAAGAAGTGCCCTCCACCTCCAGCTTCTCCTGTCTACACTTCTCCTCCTTACTCTCCTTCCCCAGTGTACACTTCACCTCCTTACTCTCCCTCCCCTGTCTACAAGTCTCCTCCCCCTTACTAAGAGCTCATTACCGCAATGAGAAGGAGCTCGCGCGATCCAACTCAGGTTTTCAGTGCTGAGGCTTTGAGGAAATCGGATGGGCGATGACTCTGAATTGCAAGAGTTTATCTGTGGGCGTGAACAATGACAGTTGCTTCGTGGACAAACGATGGATGTGCCCCGAATGTTGATGTGCTAGTATATAGTCTTGTATTTTTGTGAGAGATAGGTGGAGTGTGAGGCTGTGCATTTAACTGCATTGGCTGCTGCATATCAAAATAAGCACAAAGTGGAGTGTAGCTTGGTTCGAGATATTGCATTCGGTGCCGGTTAGCCTCTGTAACGAAAGCCGTTCGCTGCAAGTTGGAGAACGGTACACTGAATTAGAGCCGC | |||||||||
gi|208400511|gb|DC908738.1|DC908738 DC908738 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): AATCATCCTGCAGCCACTGCCACCATTCCACCGCTTGTGCTGATCGACTCACTGCTGCAGCTCAAGATGAAGGGATTCCAAGCACTGGTGCTGATCGGAACTCTCATGCTCGTCGCTTGCAGCTGCTCAGCTGCCAGAATTTTAGTGGAAGAGAATCGTGCAGCATCCCAGATGAAGTTCAAGGGTCCATCGCCAACCGAGAAGCCCAAATTGCCGCCGCTGCCCACTTTGCCTCCCAAGCCCAAGCTCACATTGCCGCCGCAGCCCAAGCTGCCGAGCTTCGGGAAGAAGTGCCCTCCACCTCCAGCTTCTCCTGTCTACACTTCTCCTCCTTACTCTCCTTCCCCAGTGTACACTTCACCTCCTTACTCTCCCTCCCCTGTCTACAAGTCTCCTCCCCCTTACTAAGAGCTCATTACCGCAATGAGAAGGAGCTCGCGCGATCCAACTCAGGTTTTCAGTGCTGAGGCTTTGAGGAAATCGGATGGGCGATGACTCTGAATTGCAAGAGTTTATCTGTGGGCGTGAACAATGACAGTTGCTTCGTGGACAAACGATGGATGTGCCCCGAATGTTGATGTGCTAGTATATAGTCTTGTATTTTTGTGAGAGATAGGTGGAGTGTGAGGCTGTGCATTTAACTGCATTGGCTGCTGCATATCAAAATAAGCACAAAGTGGAGTGTAGCTTGGTTCGAGATATTGCATTCGGTGCCCGGTTAGCNTCTGTAACGAAGCCGTTCGCTGCAGTTGGAGANGGTACACTGTA | |||||||||
gi|208395087|gb|DC920500.1|DC920500 DC920500 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): GCTGCAGCTCAAGATGAAGGGATTCCAAGCACTGGTGCTGATCGGAACTCTCATGCTCGTCGCTTGCAGCTGCTCAGCTGCCAGAATTTTAGTGGAAGAGAATCGTGCAGCATCCCAGATGAAGTTCAAGGGTCCATCGCCAACCGAGAAGCCCAAATTGCCGCCGCTGCCCACTTTGCCTCCCAAGCCCAAGCTCACATTGCCGCCGCAGCCCAAGCTGCCGAGCTTCGGGAAGAAGTGCCCTCCACCTCCAGCTTCTCCTGTCTACACTTCTCCTCCTTACTCTCCTTCCCCAGTGTACACTTCACCTCCTTACTCTCCCTCCCCTGTCTACAAGTCTCCTCCCCCTTACTAAGAGCTCATTACCGCAATGAGAAGGAGCTCGCGCGATCCAACTCAGGTTTTCAGTGCTGAGGCTTTGAGGAAATCGGATGGGCGATGACTCTGAATTGCAAGAGTTTATCTGTGGGCGTGAACAATGACAGTTGCTTCGTGGACAAACGATGGATGTGCCCCGAATGTTGATGTGCTAGTATATAGTCTTGTATTTTTGTGAGAGATAGGTGGAGTGTGAGGCTGTGCATTTAACTGCATTGGCTGCTGCATATCAAAATAAGCACAAAGTGGAGTGTAGCTTGGTTCGAGATACTGCATTCGGTGCCGGTTAGCCTCTGTAACGAAAGCCGTTCGCTGCAAGTTGGAGAACGGTACACTGTAATTAGGAGCCGCATT | |||||||||
gi|208396658|gb|DC920366.1|DC920366 DC920366 ppaa full-length cDNA library; antheridia and archgonia Physcomitrella patens subsp TCGGACCAGGCTTCATTCCCC EST sequence (targeted fragment marked with yellow): TGCCTACNGAATCATCCTGCAGCCACTGCCACCATTCCACCGCTTGTGCTGATCGACTCACTGCTGCAGCTCAAGATGAAGGGATTCCAAGCACTGGTGCTGATCGGAACTCTCATGCTCGTCGCTTGCAGCTGCTCAGCTGCCAGAATTTTAGTGGAAGAGAATCGTGCAGCATCCCAGATGAAGTTCAAGGGTCCATCGCCAACCGAGAAGCCCAAATTGCCGCCGCTGCCCACTTTGCCTCCCAAGCCCAAGCTCACATTGCCGCCGCAGCCCAAGCTGCCGAGCTTCGGGAAGAAGTGCCCTCCACCTCCAGCTTCTCCTGTCTACACTTCTCCTCCTTACTCTCCTTCCCCAGTGTACACTTCACCTCCTTACTCTCCCTCCCCTGTCTACAAGTCTCCTCCCCCTTACTAAGAGCTCATTACCGCAATGAGAAGGAGCTCGCGCGATCCAACTCAGGTTTTCAGTGCTGAGGCTTTGAGGAAATCGGATGGGCGATGACTCTGAATTGCAAGAGTTTATCTGTGGGCGTGAACAATGACAGTTGCTTCGTGGACAAACGATGGATGTGCCCCGAATGTTGATGTGCTAGTATATAGTCTTGTATTTTTGTGAGAGATAGGTGGAGTGTGAGGCTGTGCATTTAACTGCATTGGCTGCTGCATATCAAAATGAGCACAAAGTGGAGTGTAGCTTGGTTCGAGATATTGCATTCGGTGCCGGTTAGCCTCTGTAACGAAAGCCGTTCGCTGCAAGTTGGAGAACGGTACCACTGAATTAGAGCCGC | |||||||||