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mature miRNA: TCGGACCAGGCTTCATTCCT
species: Hevea brasiliensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|109685520|gb|EC608335.1|EC608335 Y29A08 YLX600 Hevea brasiliensis cDNA clone Y29A08 5', mRNA sequence 

TCGGACCAGGCTTCATTCCT
.|.||||||||.||||. |.
GGTCTGGTCCGGAGTAGAGG

EST sequence (targeted fragment marked with yellow):
ATGTGAGCACTCTGCACATCGTAATGGTCAGATAAGAAGAGCTCCTTGGCACCGTGAAACTGCCTGCGGCCACCAAGCGCCTCCTCAGGCCGATAGTACCACCTCACCCTTACCTTCACATTGTTTCTGCTATCCGCCTCGATCCCCTCAATTTTCGCCACGTATGGCGGCTTTCCGGTGTCCGATGGTCTCATCAACACGCAATCCCCCACTGCCAAACAGCAGCAGCACCAAAGCATTAAAAAGGCAAGCATTTGAAAAGTACATATACATACCCATATACAGATATACGCATACGTGTATGTATAGCGCATGCATACATGTATCTATACAGGTACCTTTGACGACTTTGTTGGTGCCGCGAATGGTGTAGGAGTCGAGCTCTCTTTTGCCGTGTTTGGGCTTGGAGATGAGGCCTGGTCTGGTTTTGGCCATGGAAGTGATAGGCTTGGTTGGGGTAATGTGAGATTTGAAGAAAGTAAATTTGGGGAAGATTTGTACGATGGCGGGAGAGGAACCCTAGGACCTAGCTTCTGCTTCTCATGGAGGAGGGATGAGAGAGAAGACACAGGGAACTGTGTGTGAGACTGTGCCTTGACCTTGCTTCCTGATGTGGCTTTTCCTTTTAGCTCAAATTTAAACAATTAAAAAAA


gi|109677507|gb|EC600324.1|EC600324 Y64B04 YLX600 Hevea brasiliensis cDNA clone Y64B04 5', mRNA sequence 

TCGGACCAGGCTTCATTCCT
| ||||||||||.| || ||
AACCTGGTCCGAGGCAAAGA

EST sequence (targeted fragment marked with yellow):
CGGCCCTGATCTACTGTCTAGATCTAGCAAATCTGGTAGCTCAGCAAGTGGTAGAGATGACAGCCAGCAGTCTGGCAGAGCCTCAAAGAGAATCAAAAAAGCAAGAGTAGCTTTCAGAGATCAAGTTGGGGGAGAATTAGTTGAAGTTGTTGGGATTTCAGATGGTGTAGATGTAGAAACGGAGCCTGGTCCAATAGGTGTAAAAGAAGGAAGTCTTGTTGGAAAATATGAATCCCTTATACAGACTACAGTAATACTGAAAGGTAAGGAACAATTGCCAGCAAAGGAAAACAATGCTTCCCAAACAGGTGTTACTAATAAATTGCAAGAAGTCTTGAATAAAGTCAAGACTGTTCCCAAAAGTGGTGTGCATGATGACCTTTATGGAGAAGCATTTTCTGGCAAATTGGGGTCTTCCTGGGCGTATCCTATGGTTACTTCTGGCGGCAAACTGGATCCTCCAACTAAGGATGACAAACAAAAGGATATTGCTGCT