| mature miRNA: TCGTCGCGGTGGAGGAGGAAG species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|34489401|gb|CF472029.1|CF472029 RTDS1_8_H11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus taeda cDNA clone RTDS1_8_H TCGTCGCGGTGGAGGAGGAAG EST sequence (targeted fragment marked with yellow): GACAGATCAGACGCGAATTTTTGCTATAGAGTACAGATAGGGAAGGACGCGCATGTTGAGTGAGAGAGAAAAACGGTAATGCACGCGGCGCTAGTAGTACACAAGAATCACCAGGAGTATGCTTTTTGCAATCGTTGACCCAAAGGAATGTGAACAAAGGACGCAGTGGGGGTGAAAATTATGGCTCTCGTCGCTGATGAAAGGTGTCAGGACTTAGTATCCGGCGCTGTATCCACCGTATCCTTGCTGATACCCTCCTCCACCTTGGTTATAGCCACCGCCGCCGTAGCCACCTCCACCGTAGCCACCACCACCACCGCCGCTGTTGTATCCGCCGCCGCTATATCCTCCNTCCTCCTCCACCTCCTCCACCGCCACGGGTGTTAGCAAGGGTGACCTTGATCCTGCGGCCATCGAGCTCCTGTTCGTTGAGAGCACCAATGGCAGCATCGGCCTCATTGCTCGTGCCGAAGGTGACGAATCCGAAACCGCGAGAGCGACCGGTGTCACGATCGCGCATCACGATTGAATCGATAACTTGACCGTATACTCCAAAG | |||||||||
gi|34357749|gb|CF399332.1|CF399332 RTDS3_28_B08.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus taeda cDNA clone RTDS3_28 TCGTCGCGGTGGAGGAGGAAG EST sequence (targeted fragment marked with yellow): AAGATTTACTATTATGAATGTCTTAAAAGCACTAAGATACACTTACAATACGGAAAGTGTTAAAAGAATCAAAAGATCATGAATTAAAAATCATTATTCACTGTTCACGACATGAAATTCTAAAAGCATTTAAATAAAATCCAAATAAAGTTTCTTTATATTGATTATTATTACGGTGAAGCTACATATCACTAGCTCCCGCCATACACTTAAAAGTTCCCTGGTGCAGGGCCTCTGCGGCATTCATTAAGCATGTCAACATAGAACTGGCATTTGCTAATGTCACTCCCATAATTGCTAATGCAGTCTTGGAATGCCTTGGCTTGATTTGCACAGGAATCCATTCCACCCATATTTGCAACAGAAAGGGAGCCACTTTGTGCAGCAGGAGTTTCAGCAGGGGCATACTCATGTTGCACTGTCCGTGGTCCAACAACTGCATCAACAGCTCTGTGTGCTATAGCACTTCCAGTTCCAAAGGCCACACCTTGAGCTATGGTAGAACCGATGCCACTAAGCATAGACCCACCACCACTATGTTGAACAGGTGCTGGAGGAGGAGCATGGGCAACTGGCTGAGGAGGACTACGAACTGGTGCACGAGGTGCTGCACGAGGAGCAGGCCTTCCTCCTCCACCGCGACGAGCCATGATTGCAAGTACGA | |||||||||
gi|49451381|gb|CO370064.1|CO370064 RTK1_65_F07.b1_A029 Roots minus potassium Pinus taeda cDNA clone RTK1_65_F07_A029 3', mRNA se TCGTCGCGGTGGAGGAGGAAG EST sequence (targeted fragment marked with yellow): CAAAGATTTACTATTATGAATGTCTTAAAAGCACTAAGATACACTTACAATACGGAAAGTGTTAAAAGAATCAAAAGATCATGAATTAAAAATCATTATTCACTGTTCACGACATGAAATTCTAAAAGCATTTAAATAAAATCCAAATAAAGTTTCTTTATATTGATTATTATTACGGTGAAGCTACATATCACTAGCTCCCGCCATACACTTAAAAGTTCCCTGGTGCAGGGCCTCTGCGGCATTCATTAAGCATGTCAACATAGAACTGGCATTTGCTAATGTCACTCCCATAATTGCTAATGCAGTCTTGGAATGCCTTGGCTTGATTTGCACAGGAATCCATTCCACCCATATTTGCAACAGAAAGGGAGCCACTTTGTGCAGCAGGAGTTTCAGCAGGGGCATACTCATGTTGCACTGTCCGTGGTCCAACAACTGCATCAACAGCTCTGTGTGCTATAGCACTTCCAGTTCCAAAGGCCACACCTTGAGCTATGGTAGAACCGATGCCACTAAGCATAGACCCACCACCACTATGTTGAACAGGTGCTGGAGGAGGAGCATGGGCAACTGGCTGAGGAGGACTACGAACTGGTGCACGAGGTGCTGCACGAGGAGCAGGCCTTCCTCCTCCACCGCGACGAGCCATGATTGCAAGTACGACGACGAGGGAGAAATTAGTAACGCTTGAACAA | |||||||||
gi|34347474|gb|CF389057.1|CF389057 RTDR2_13_F08.b1_A021 Loblolly pine roots recovering from drought DR2 Pinus taeda cDNA clone R TCGTCGCGGTGGAGGAGGAAG EST sequence (targeted fragment marked with yellow): CAGACGCGAATTTTTGCTATAGAGTACAGATAGGGAAGGACGCGCATGTTGAGTGAGAGAGAAAAACGGTAATGCACGCGGCGCTAGTAGTACACAAGAATCACCAGGAGTATGCTTTTTGCAATCGTTGACCCAAAGGAATGTGAACAAAGGACGCAGTGGGGGTGAAAATTATGGCTCTCGTCGCTGATGAAAGGTGTCAGGACTTAGTATCCGGCGCTGTATCCACCGTATCCTTGCTGATACCCTCCTCCACCTTGGTTATAGCCACCGCCGCCGTAGCCACCTCCACCGTAGCCACCACCACCACCGCCGCTGTTGTATCCGCCGCCGCCATATCCTCCTCCTCCTCCACCTCCTCCACCGCCACGGCTGTTAGCAAGGTTGACCTTGATCCTGCGGCCATCGAGCTCCTGTTCGTTGAG | |||||||||
gi|66741834|gb|DR019464.1|DR019464 STRS1_30_E11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_30_E11_A TCGTCGCGGTGGAGGAGGAAG EST sequence (targeted fragment marked with yellow): AAGATTTACTATTATGAATGTCTTAAAAGCACTAAGATACACTTACAATATGGAAAGTGTTAAAAGAATCAAAAGATCATAAATTAGAAATCATTATTCACTGTTCACGACATGAAATTCTAAAAGCATTTAAATAAAATCCAAATAAAGTTTCTTTATATTGATTATTATTACGGTGAAGCTACATATCACTAGCTCCCGCCATACACTTAAAAGTTCCCTGGTGCAGGGCCTCTGCGGCATTCATTAAGCATGTCAACATAGAACTGGCATTTGCTAATGTCACTCCCATAATTGCTAATGCAGTCTTGGAATGCCTTGGCTTGATTTGCACAGGAATCCATTCCACCCATATTTGCAACAGAAAGGGAGCCATTTTGTGCAGCAGGAGTTTCATCAGGGGCATACTCATGTTGCACTGTCCGTGGTCCAACAACTGCATCAACAGCTCTGTGTGCTATAGCACTTCCAGTTCCAAAGGCCACACCTTGAGCTATGGTAGAACCGATGCCACTAAGCAGAGACCCACCACCACTAGGTTGAACAGGTGCTGGAGGAGGAGCATGGGCAACTGGCTGAGGAGGACTACAAACTGGTGCACGAGGTGCTGCACGAGGAGCGGGCCTTCCTCCTCCACCGCGACGAGCCATGATTGCAAGTACGACGACAAGGGAGAAATTAGTAACGCTTGAACAA | |||||||||
gi|67561225|gb|DR101870.1|DR101870 STRR1_76_H12.b1_A033 Stem Response Resistant Pinus taeda cDNA clone STRR1_76_H12_A033 3', mRN TCGTCGCGGTGGAGGAGGAAG EST sequence (targeted fragment marked with yellow): CAACCAATAAAAATATTCTTTGCAGAAGAATGCAGGGCTGAAAGTAATGAGAACCATACAGATATCACATGGTGAGACATCTTTCATAAGATTTACTATTATGAATGTCTTAAAAGCACTAAGATACACTTACAATATGGAAAGTGTTAAAAGAATCAAAAGATCATGAATTAGAAATCATTATTCACTGTTCACGACATGAAATTCTAAAAGCATTTAAATAAAATCCAAATAAAGTTTCTTTATATTGATTATTATTACGGTGAAGCTACATATCACTAGCTCCCGCCATACACTTAAAAGCTCCCTGGTGCAGGGCCTCTGCGGCATTCATTAAGCATGTCAACATAGAACTGGCATTTGCTAATGTCACTCCCATAATTGCTAATGCAGTCTTGGAATGCCTTGGCTTGATTTGCACAGGAATCCATTCCACCCATATTTGCAACAGAAAGGGAGCCATTTTGTGCAGCGGGAGTTTCAGCAGGGGCATACTCATGTTGCACTGTCCGTGGTCCAACAACTGCATCAACAGCTCTGTGTGCTATAGCACTTCCAGTTCCAAAGGCCACACCTTGAGCTATGGTAGAACCGATGCCACTAAGCATAGACCCACCACCACTAGGTTGAACAGGTGCTGGAGGAGGAGCATGGGCAACTGGCTGAGGAGGACTACGAACTGGTGCACGAGGTGCTGCACGAGGAGCGGGCCTTCCTCCTCCACCGCGACGAGCCATGATTGCAAGTACGA | |||||||||
gi|66744510|gb|DR022140.1|DR022140 STRS1_49_D05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda cDNA clone STRS1_49_D05_A TCGTCGCGGTGGAGGAGGAAG EST sequence (targeted fragment marked with yellow): TTCTTTTTTCACCATAAAAATATTTTTGCAGAAGAATGCAGGCTGAAAGTAATGAGAACCATACAAATATCACATGCGAGACATCTTTCATAAGATTTACTATTATGAATGTCTTAAAAGCACTAAGATACACTTACAATATGGAAAGTGTTAAAAGAATCAAAAGATCATGAATTAGAAATCATTATTCACTGTTCACGACATGAAATTCTAAAAGCATTTAAATAAAATCCAAATAAAGTTTCTTTATATTGATTATTATTACGGTGAAGCTACATATCACTAGCTCCCGCCATACACTTAAAAGTTCCCTGGTGCAGGGCCTCTGCGGCATTCATTAAGCATGTCAACATAGAACTGGCATTTGCTAATGTCACTCCCATAATTGCTAATGCAGTCTTGGAATGCCTTGGCTTGATTTGCACAGGAATCCATTCCACCCATATTTGCAACAGAAAGGGAGCCATTTTGTGCAGCAGGAGTTTCAGCAGGGGCATACTCATGTTGCACTGTCCGTGGTCCAACAACTGCATCAACAGCTCTGTGTGCTATAGCACTTCCAGTTCCAAAGGCCACACCTTGAGCTATGGTAGAACCGATGCCACTAAGCATAGACCCACCACCACTAGGTTGAACAGGTGCTGGAGGAGGAGCATGGGCAACTGGCTGAGGAGGACTACGAACTGGTGCACGAGGTGCTGCACGAGGAGCGGGCCTTCCTCCTCCACCGCGACGAGCCATGATTGCAAGTACGACGACGAGGGAGAAATTAGTAACGCTTGAACAACGTTCAATCACAGACCAAGAATGTGTACAAGAAAACTCGCTGTGTGGACT | |||||||||