| mature miRNA: TCGTTGAGTGCGGCGTTGATG species: Triphysaria pusilla database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159703283|gb|EY158744.1|EY158744 CBTN7246.b1_L12.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TCGTTGAGTGCGGCGTTGATG EST sequence (targeted fragment marked with yellow): GGGGATCATTAAATCTGCTTTCATTAATTGTTCATATCTTCATACAAATATGGCACACAATATATACATGCTGTACCTGGCTTGCACTCTCACTCTTCAAGCTTTTTCGTCTATTGCCTCAGCCGCGATTGTTGAGCATTCTTTCCATGTACAAAATCGTACAGTGAATCGGCTATGCAGAAACCAAGTAATAACAGCAGTGAATGGGAGTCTTCCTGGGCCAACTATTAGAGTACAAGAGGGTGATACACTTATCGTTCATGTTTTCAACTTGTCCCCATACAACCTAACTATACACTGGCATGGTATATTTCAACTACTGAGCGGATGGGCTGATGGGCCGGACTTTGCTACTCAATGCCCGATCCGGCCCGGACAAAGTTACACCTACAAATTCACTATAACCCGACAAGAGGGAACTCTTTGGTGGCACGCGCATGTTCAATGGCTCCGGGCCACCGTTTATGGGGCCTTAATTATCCGGCCCAGATCCGGTCAACTATACCCATTTCCTAAGCCACATAGAGAAATCCCAATCCTCCTTGGAGAATGGTGGAATGCTAATGTTATTGATGTCGAAAACCAAGCCCTAGCAACGGGTGTATCGCCCAATCTATCCGATGCTTACACAATTAATGGTCGACCCGGAGATTTATACCCGTGCTCGTCAAGTAATACATATAAACTAAAGGTTGTTCAGGCAAAACATATCCCCTACGCATAATCAACGCTGCACTCAACAATCAATTGTTCTTCAAAATCGCAAACCATAAACTAAAGTAGTAGCCGTCGA | |||||||||
gi|159646002|gb|EY176451.1|EY176451 CBTI5547.b1_F19.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TCGTTGAGTGCGGCGTTGATG EST sequence (targeted fragment marked with yellow): ATTGAAGTTGAACAAGGCAAAACATACCTACTAAGAATCATCAACGCCGCACTCAACGACGAGCTCTTCTTCGCCATAGCCAAACACACTCTAACCGTCGTCGAAATCGACGCCGTCTACACAAAGCCCTTCTCAACCAACGCTATCCTAATAGCCCCCGGACAAACAACAAACGTCCTCGTCCGAGCAAACCAACTCCCCAATCGCTACTTCATGGCCGTCTCACCTTTCATGGACGCCCCAATCACCGTCGACAACAAAACCGCCACCGCCATATTACAATATAAAGGTATCAAAAACACAATAATCCCCATTCTCCCCAAATTACCCTCCAAAAACAACACAAACTTCGCACTAGACTATAGTTCGAAGCTACGAAGCCTAAACTCACCAAACTATCCGGCCAACGTTCCACTTAAAGTCAATCGCCATCTTCTTTACACCGTCGGCCTCGGGATTACCCCTTGCCCGACTTGTCAAAACGGGACACGCTTCGTCGCCTCTTTAAACAACATGACTTTTGTTATGCCTAAGATTGGATTACTACAAGCTCATTATTACAACATGAAAAACGTTTTCACAACCGATTTTCCCGATCGTCCTCCGACACCGTTTAACTACACCGGTGCGCCTTTGACCGCTAATCTTCAGTCGGTGATAGCTAATGTGCCTCGGCTAAACAAGATCAATTTTAACTCGACGGTTGAGTTGGTTATACAAGATACTAATCTTTTGAGCGTTGAATCTCACCCGTTCCATTTACATGGATATAATTTCTTCGTTGTTG | |||||||||
gi|159667224|gb|EY171572.1|EY171572 CBTI3266.b1_C02.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TCGTTGAGTGCGGCGTTGATG EST sequence (targeted fragment marked with yellow): GGGATCATTAAATCTGCTTTCATTAATTGTTCATATCTTCATACAAATATGGCACACAATATATACATGCTGTACCTGGCTTGCACTCTCACTCTTCTAGCTTTTTCGTCTATTGCCTCAGCCGCGATTGTTGAGCATTCTTTCCATGTACAAAATCGTACAGTGAATCGGCTATGCAGAAACCAAGTAATAACAGCAGTGAATGGGAGTCTTCCTGGGCCAACTATTCGAGTACAAGAGGGTGATACACTTATCGTTCATGTTTTCAACTTGTCCCCATGCAACCTAACTATACACTGGCATGGTATATTTCAACTACTGAGCGGATGGGCTGATGGGCCGGACTTTGCTACTCAATGCCCGATCCGGCCCGGACAAAGTTACACCTACAAATTCACTATAACCCGACAAGAGGGAACTCTTTGGTGGCACGCGCATGTTCAATGGCTCCGGGCCACCGTTTATGGGGCCTTAATTATCCGGCCCAGATCCGGTCAACTACACCCATTTCCTAAGCCACATAGAGAAATCCCAATCCTCCTTGGAGAATGGTGGAATGCTAATGTTATTGATGTCGAAAACCAAGCCCTAGCAACAGGTGTATCGCCCAATCTATCCGATGCTTACACAATTAATGGCCGACCCGGAGATTTATACCCGTGCTCGTCAAGTAATACATATAAACTAAAGGTTGTTCAAGGCAAAACATATCTCCTACGCATAATCAACGCTGCACTCAACAATCAATTGTTCTTCA | |||||||||
gi|159608759|gb|EY147709.1|EY147709 CBTN10930.b1_D21.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusi TCGTTGAGTGCGGCGTTGATG EST sequence (targeted fragment marked with yellow): GGGATCATTAAATCTGCTTTCATTAATTGTTCATATCTTCATACAAATATGGCACACAATATATACATGCTGTACCTGGCTTGCACTCTCACTCTTCTAGCTTTTTCGTCTATTGCCTCAGCCGCGATTGTTGAGCATTCTTTCCATGTACAAAATCGTACAGTGAATCGGCTATGCAGAAACCAAGTAATAACAGCAGTGAATGGGAGTCTTCCTGGGCCAACTATTCGAGTACAAGAGGGTGATACACTTATCGTTCATGTTTTCAACTTGTCCCCATACAACCTAACTATACACTGGCATGGTATATTTCAACTACTGAGCGGATGGGCTGATGGGCCGGACTTTGCTACTCAATGCCCGATCCGGCCCGGACAAAGTTACACCTACAAATTCACTATAACCCGACAAGAGGGAACTCTTTGGTGGCACGCGCATGTTCAATGGCTCCGGGCCACCGTTTATGGGGCCTTAATTATCCGGCCCAGATCCGGTCAACTATACCCATTTCCTAAGCCACATAGAGAAATCCCAATCCTCCTTGGAGAATGGTGGAATGCTAATGTTATTGATGTCGAAAACAAAGCCCTAGCAACAGGTGTATCGCCCAATCTATCCGATGCTTACACAATTAATGGTCGACCCGGAGATTTATACCCGTGCTCGTCAAGTAATACATATAAACTAAAGGTTGTTCAAGGCAAAACATATCTCCTACGCATAATCAACGCTGCACTCAACAATCAATTGTTCTTCAAAATCGCAAACC | |||||||||
gi|159689448|gb|EY159557.1|EY159557 CBTN7617.b1_B10.ab1:P Triphysaria pusilla root tip normalized cDNA library Triphysaria pusil TCGTTGAGTGCGGCGTTGATG EST sequence (targeted fragment marked with yellow): AACGAACTACCGCAATTAGTCACGGAGATCATTAAATCTGCTTTCATTAATTGTTCATATCTTCATACAAATATGGCACACAATATATACATGCTGTACCTGGCTTGCACTCTCACTCTTCTAGCTTTTTCGTCTATTGCCTCAGCCGCGATTGTTGAACATTCTTTCCATGTACAAAATCGTACAGTGAATCGGCTGTGCAGAAACCAAGTAATAACAGCAGTGAATGGGAGTCTTCCTGGGCCAACTATTCGAGTACAAGAGGGTGATACACTTATCGTTCATGTTTTCAACTTGTCCCCATACAACCTAACTATACACTGGCATGGTATATTTCAACTACTGAGCGGATGGGCTGATGGGCCGGACTTTGCTACTCAATGCCCGATCCGGCCCGGACAAAGTTACACCTACAAATTCACTATAACCCGACAAGAGGGAACTCTTTGGTGGCACGCGCATGCTCAATGGCTCCGGGCCACCGTTTATGGGGCCTTGATTATCCGGCCCAGATCCGGTCAACTATACCCATTTCCTAAGCCACATAGAGAAATCCCAATCCTCCTTGGAGAATGGTGGAATGCTAATGTTATTGATGTCGAAAACCAAGCCCTAGCAACAGGTGTATCGCCCAATCTATCCGATGCTTACACAATTAATGGTCGACCCGGAGATTTATACCCGTGCTCGTCAAGTAATACATATAAACTAAAGGTTGTTCAAGGCAAAACATATCTCCTACGCATAATCAACGCTGCACTCAAC | |||||||||