| mature miRNA: TCTCCCCCAAAGGCATCCAA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|73881731|gb|DT484469.1|DT484469 WS02525.B21_I02 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02525_I02 3', mRNA sequence TCTCCCCCAAAGGCATCCAA EST sequence (targeted fragment marked with yellow): TCACGAGGGGAAGGATGTGGCGAAGGAAGTTGATGAGATGCGAAATGTTGAGGAGAGTGTTGAGAGTGGGAATAATAGTGAAATGGAAGAAGGGGAGCTTGAGCCAGAACCTGATTCAGTTCCTAAAGTTGCCAAGGAAAATGAGAATGATAATGGCAATGAAAGACGAGAGGATGTTATAGAAGATATTGATCAGAGGAAGGTTGAGATTGAGTCCGAAGTTAAGGATCAAGTAAATGAAGAGGAGAAAAGGCCCAAATAAGGTAGGGATCAGGTACGGGGAGTCCAGTTTTACTGTCATGTACAGTGGGATTCCTTTGGGGAAGGCTTTAGTGCCTGGGTTTTATCAGGAAGCTCACAGTCAGAGACAGGTGGAGGCCACCATATCCGTTGATCGATATAGCTTGATGCAAGCTTATGCTTCTGATTTGATCAGAGATGCCTCCTTGAATGATCGTGTGGAGCTCAGAGTTCTCGGTCAAGTCGGTGCTAAGATCCGCGTTCTAGACTTCGATTCCCCTGGTGTTCAGGTATCAGTGGATTGTGCAATAGTGATAAGTCCAAGAAAACAGTCTCTTACTTACAAGCAGTGTGGATTCGATGGATTGAATGTTTGAAGGTCCACAAAAAGATCTATTTTTTCTTTCATTTTCTCCCGCATTAAACAAGAACAGAGAGAGAGGAAAAAGGGGAACGCTACACTTGTGAAAATGGGAGGCCAAAAGGTTTTCCCAAGATTTTGCTGAATATTATATAGTATTATTATTTTTAAATGGTAAAAAAAAAAAAAAAAAA | |||||||||
gi|52494772|gb|CV241797.1|CV241797 WS02513.B21_E07 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02513_E07 3', mRNA sequence TCTCCCCCAAAGGCATCCAA EST sequence (targeted fragment marked with yellow): GAACATGCCGGCCAAGAGACAACAAAACAGCTTCAAACTTTATGAAAGAAGAAACAACAGCTTCAAAAACAGTCTCATGATCAACACTCTATTGCCTAGTTTTGCAAACAGTAGTAACGCTTCCCCAGTTACCGGGTTTTCGCCAAGAAACAAACCAGAGATCTTGTCTCCAAGCTTGCTTGACTTCCCTAAACTTACACTTAGCCCTGTAACCCCATTAAATGAAGATCCTTTTAACAAGTGCTCACCTTCTTTAGGGAATTCATCATCAGAAGAGGAGAGAGCAATAGCAGAGAAAGGTTTTTATTTGCATCCGTCGCCTATCTCTACCCCTAGAGATTCAGAGCCCCAGTTGCTGTCGCTTTTTCCTGTAACCTCACCGAAAGTCTCAGGCTCTTCTTCATGAAAATATTCAAGTCAAAAGGATTGATGATGGGCTATGGATGGTTTTGAGGGAGAGGACACAGTGATTTCTGCCCTGGATCCTTTGGCCAACTACTACTTGGTATAAGATTTTCTTGCAGTCTGAGTGCTCAGATTCTTGATCAGTACCCCCACCTAGAGAACTGAGAGATAATGAATTCGAGGCATCCTTAGATATTTTGGGTATCTAGCACAATTTGTAAAGTGCGTGTAAGGGAACAAGACAAGTTTAATGAACTATCTCAGTTTGCTTCTTTCAAGAAGGAAGTGAAGTCATTGTCCTTAGCTAGAACTTTCAATTGCTATGCAAATATGGTATCATGCAATGTTATTGTTTCCAAAAAAAAAAAAAAAAAACT | |||||||||
gi|38598571|gb|CK114246.1|CK114246 V063A08 Populus male catkins cDNA library Populus trichocarpa cDNA clone V063A08 5', mRNA seq TCTCCCCCAAAGGCATCCAA EST sequence (targeted fragment marked with yellow): TTTTTTTTTCCCGGGCCCCGGGCGGGGCGGGAAAAAAAAAAAAAAAATAAATACCCGGCTTGGGGGCCCCCCCCTTCCCCTTTTTTTTCTTTTTAATCCCCCCGGACCCCCCCCTTTCCTTTTTGGGTTTTTTGGGGGGAGAGGGAAAAACACCCAAAAGGGGGAGGCCCCCAAAAAACGAGGGGGGGAATTGCCCCCCCTCTCGCTTTTGGGGGGGTTGGGGGGGGGGGGCTTTGGGGCAACAAAAAAAAAAAAGGGGGGATTGGGTTTTTCCCCAAACCTTTTAAAAAGGCCCCCACCGCCCCCAAAAAAGGGGAAAAAAAACCAAATTTTCTTTCTCTTTTTAAAAAAAAACCCCTTGGGGTTTTTGCCCCCCCCCGGCGCGGCGGTGTGGGTGGTTGTTTTTAACCCCCAAAAAAAGAAACCCCCCCCCCGCCCCGGCGTAAAACCCTTTTATTTTGGGGAAAAAAACCGCGGGGGGGGGGGGGCGGTTTTTAAAAACAACCGGCCCTTTTTCTATAAAAAAAATCTGGGGCGGGGGGGGGAAAAAATATAATTTTTTTTTTTTTAAACCCCCGCCCGCGGGGGGGGGAAATCCCTCTTTAAAAAAAAACTTCTTTTTGGGCGCCACAAAAAAAGAGGGGCCCCAAAAAAAAACAAAACCCCCCTTTTGTTTGTTTAAATCCGCCAAAAAGAAAAAAAAAACCTTTTTTTAAAAACCCCCCCTCCCCAAAAGGGGGCGCCCCACAAAAGATGGGGGGGAGAAAAAAAACACCCCCCCCCCCCTCTCTTTTATTTTTTTTTGGGGGGGAGAAAAAAATATTCTTTTAGACACCCACCCGCGGGGTTCTCTATCCACCCCACCCACACAACAAAATAACGGGGGGGGGGGGGTGGTCTTCCTCCTCTTCTTCACAAAAAAAGGAGGGGGGGGGCCCCCCTCTTTAATTTTTTTTCCAAACAAAAAAGGGCACACACACCCACGGGGCGCCCCCCTCCCTTTTATTTTATTTGGGGCGCCCCCCCCCTCTCCTCAATATAAGTAGAGAGGGGGGGCGCCCCCCCCCCCCCCCCCCCCCCCGCGGGGGGAACAAATAATTTTTTTTTTTTATTTTTTTTNNNNNNNNNNNNNNNNCTCCCCCCGGGGGGGGGGGGGGAAAAAAAAACAAACCAAAAACCACCCACCCCCCCCCCGCCCCCCTTTTTTTTCTCGCCTCCCCCCCTTTTATTATTTATTTTTTTTATTTCCTCCGCCAACCCTCTTTTTTTTTTTTTTTTTTCACCCCGCCCCCCCCCCCTCTTTTTTTTTTTTTTTTTTTTTTTTCCCCCCCCCCCCCCCCCCC | |||||||||
gi|52397013|gb|CV236931.1|CV236931 WS01225.B21_H05 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01225_H05 3', mRNA sequence TCTCCCCCAAAGGCATCCAA EST sequence (targeted fragment marked with yellow): CCCCGGGGGGGGGGTTCCCTTTCCCCCGGGGGGGCTCTTTTTGTAATTTTTTTTGGGGGGCCCCCCTCTTGGGGCCCCCGGGGGGGGGGTTTCCCCCCGGGGGTTTTTTTTTGGGGGTTTTTGGGGGGGGGGGGGTTTTTTTTGGGCCCCCCCCGGGGGGTTTTTTTGGGGGTTTTTGCGGGGGGCCCCCTTTTCGGGGGGGGCCCGGGGGGGGGTTTTCCGCCCCGGGGGTGGCCCCCCCCCTTGTGGGGGGGACCCCCGGGGGGGTTCCGGGGGGGGGTCCGGGGTTTTTTCCCCGGGGGGGGGGGGGGTTTTTGGGTTTTTTTTCCCCCCTTCCGGGGCCCCTGGGGTTTTTTTTTAATTTTGGGGGGGTTGGGGTTTTTTTGGTGGTTTTCGGGTTTTTTTGGCCCTTTTTTTGTTTGGGGGCCCCCCCCCCCCCGGGCCGGGGTTTTTTTTTTTTTTTTTTTTTCCGGGCCCCCGGGGGGGGTTTTTTTTCCCTTTGGGTTCCTTTTTTTTTTTTGGGGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCAAAGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTTAAAGGGAACCAAAAAAAAAAAAAAAA | |||||||||
gi|73873802|gb|DT476540.1|DT476540 WS01229.B21_P04 PT-GT-FL-A-3 Populus trichocarpa cDNA clone WS01229_P04 3', mRNA sequence TCTCCCCCAAAGGCATCCAA EST sequence (targeted fragment marked with yellow): AAAAAAAGGTTGTTTTTTTGAAGAACAAATTGGGGTTGGGGGGAGTTTTTAATTTAAAAGGGGGGCCGGGCTTAAAAGGTTTTTTGGGAAGAAACTTCCCCGAGGGCCTTGCCATTTTTTTTTAAAATTTGGGGGGCAGGGGGGTGGGCCCCGGGCTTCCAACCCAAGAATTTTGGGGCCCCCTTGGGGTTTGGGGAAAGATTTCCCCAACCAATCTTGCCAACCCCGAAGGGGTTTTTAATTTAATGTCTTTTTTTTCCAAGGGGGGCCCCAAAAAAGGATTTGGGGTTCCAAATTTTTTTAATCAAATTCCCAAGTTCCTTGCCTTTTTTTTCCCTTCCCTAAGGGGGGGAAAGAAAAAGTCCCGGGAAGCCCTTTTTTAAGGACCCGGAAAAGGCCCCCCCCCCCCGGTGGGCCTTTTCCGGGGGCAAAAATTTGGGAAAAAACGGGTTGTATTTTTTTGGGGGGGACTGTACCCCCTTTTTTTTTTTTTTTTTTTTTTTGCTTGGGCCAAGGGGGGTTCCCCTTTTAAAAATGAAAGGGGGGGGGGCCCCCCTTTTTTTTTGGTAAGGGGGGGGTTAAAAATTCAACCCGGGCCAAATTTGGTTTAATTTTTTTTCCTTTTTTTAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|73880564|gb|DT483302.1|DT483302 WS02522.B21_D12 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02522_D12 3', mRNA sequence TCTCCCCCAAAGGCATCCAA EST sequence (targeted fragment marked with yellow): TCCAGATGCTCACTGGCTCAACAGAGACAGCAAAACAGGCTTCCTCGAAGACAACCCAAGATCCACCAACAACACCGACTCAAACTTCAAGAAACTACGCCATCCCTCCTATCAAGAACATGCCGGCCAAGAGACAACAAAACAGCTTCAAACTTTATGAAAGAAGAAACAACAGCTTCAAAAACAGTCTCATGATCAACACTCTATTGCCTAGTTTTGCAAACAGTAGTAACGCTTCCCCAGTTACCGGGTTTTCGCCAAGAAACAAACCAGAGATCTTGTCTCCAAGCTTGCTTGACTTCCCTAAACTTACACTTAGCCCTGTAACCCCATTAAATGAAGATCCTTTTAACAAGTGCTCACCTTCTTTAGGGAATTCATCATCAGAAGAGGAGAGAGCAATAGCAGAGAAAGGTTTTTATTTGCATCCGTCGCCTATCTCTACCCCTAGAGATTCAGAGCCCCAGTTGCTGTCGCTTTTTCCTGTAACCTCACCGAAAGTCTCAGGCTCTTCTTCATGAAAATATTCAAGTCAAAAGGATTGATGATGGGCTATGGATGGTTTTGAGGGAGAGGTAGAAATCTTTGTGTTCAATTATACAATTTGATCTCTCTTTTCATCATATATCGGTAAAGCCTTTAATTAATTTGTTTAACCATTTTCCCTTTCCCTTTCCCTTTCCCTTTCCTTTCCTTTCCTTTTTCAGGTAAATTTTCTAATAACTGGGGACTATATCATTATATAAAATTATTTAGGTGAATCTCCTTTCTTCCCTTTTTGTTTCTTAGGACTATCAACATGGGTAAATGAATTTGACTGTGGATGTATTTGTGCGTACATTACTGATTTTCAAGAATTTTTATAGGAACTATAGTGTTCTTTCTTCTAATGTAAAAAAAAAAAAAAAAAA | |||||||||