mature miRNA: TCTCCCTCCGTCCCAAAATAT species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
Predicted miRNA targets | |||||||||
gi|86600315|gb|CI356072.1|CI356072 CI356072 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): CTGGGACGGTTTATTCTGGGACGGAGGGAGTAGTTCCTTACAAGAAATGCAGTACGAGGACAGCGACTGACAGGGTCCAGAACTTCACAGCCAAATATACTATTACACATGCAGAAGGAGCGAGAGAGAAACAGGCAAATGCATGCCATCTGGCCCATCATCTCTAAGTAACATCTGCGATTATATTACACGTGAAGTAGACGAGAGAAATGGCAGAAGCCTGCAGGGATACAAATAGTGGCTTTGCCGGTGGCGAGCTCAGAAGTCCATGGGATCCTATCAGGCTGCCTGTCACCTAAACAAGCCAGCAAGCTAGGCACCGTCATGGAGAATTTCAGGGAGTGGCCACGTTTTCCTTGGCAAGTGGCGCCAGCTCCTCACCCTCGATGCCTGGCTGGCTCCCCTCAACGCCCAACCCAAGAAGAACCTCCT | |||||||||
gi|86835005|gb|CI346485.1|CI346485 CI346485 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): CCAGCAACATTCATTGTTATCATTTTTTCTCTGTCCCTATAATCTATTTTTATCATTTTTCCTAATGAGACATGCACTTACACATCACCCACGTACACTACCTACACACATGTAATCTACTGGTACGCTATTTTAACACACGTTCAAAGAGACGGAAGCTCGATGCTTTAAGCACACAACTACACAAGACACAATCTTAAGTGATACTCCAACGCTCGGCATTTGTCAGTAAACTACTTTTACCTACCTGATAATGGCAGGTAGGCACACTCCCTTCCATTCCCTTAGTTCTTCTCCTCTGATCATTTCAGCAAAAAAGACTCCATTGTTAACAATATCATCACTCATCCAAAACATCCACATTTCTCTCCCCTACCCTATCCTACCAACCTAATTAACTACTACCCCGTCCCAAAATATAGCAATTTTTAGTTATGAATCTGGACATTCATAAATAAAAATCTTATATTTTAGGACGGAGAGAGTACC | |||||||||
gi|218502285|gb|FG955721.1|FG955721 MA_PA64s_03532 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): CATTTACATTAGTTGAGGGAACTAAAGTGAACTTATTCCTTGTCAGTTTCCTTCCCAATTGATGGATTTTAAACTATTTGGTCGCCATTTTACTCTACACTGCCATTCCTCCTCTTCCTCACTCTCCTCGCCGCAGAGAGAGCTTGCGAGCTGATCTCGTTGGCAGTACGTACGCACTTAGTTATTCTGCTTGTATTTTGGAACGGTGGGAGTATATATGTATGGTTTTATCATCTGTGTCTAGAATTTTGGAAACATGAAATGGTTAGTGGAAGAAGGGCAATGATGATCAACCTTCCCTGACAATCCTGCCATTGAACAATTCAAGCAGCTGTGGGTGTCAATTGGACCTGCTCCTATCATCTCTGGCAACCTATCCACTCACTAATGTTAGGTGGTTCTTG | |||||||||
gi|88462953|gb|CI522064.1|CI522064 CI522064 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GCGCTCCATCCACATGCTTCTCAGTTGGAAAATCTGGTGTGAGAGGAACAGAACAAGGAGCTTGCAATTCCACAGTTGACCAAAATTCTTGATGAAATCAATGTATGGATAGCATGTGGGGCAAAAAAAAACCTAGCGAGAATAGCGCCATGAGCAGCCCATAGTCCTTCTCTGCCTGCTCCCTGTACTCTGTTTTCATTTTCCATTCCCTTCTTTTCTCCTGCAGCCTTCCTAATGTTGTTCTCTTCTTCCTGCTGCTTTCTCGGTGCTTTTGTACAGTTTCTCCCCTTCTTAATATAAAACCAGCAAAGCTGGCATAGATTAAAAAAAAACATACTATGTCAAGATATACTATCCTATATTCTATGATGGATCTCATCCCATGCTAAGTTACTTTATTCTGGGACGGTTTATTCTGGGACGGAGGGAGTA | |||||||||
gi|88729954|gb|CI753421.1|CI753421 CI753421 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): TTCCTCCGTCCCTAAATATTTGACACCATTGATTTTTTTAAACATGTTTGACCGTTCGTCTTATTCAAAAAAATTAAGTAATTAATAATTTTTTTCTATCATTTGATTCATTATTAAATATATTTTTCCGTATATATATAGTTTTCATATTTCACAAAAGTTTTTAAATAAGACGAATGGTCAAAAATGTTTTAAAAAGTCAACAACGTCATATATTTAGGGACGGAGGAAGTATATGTTAGTACATCCGTCCCGAAATAATTTTATTTTCTCTTGTCCCATAAATACAAAAGCAAAAAGACTGTAATACCCCTCCACCCAACCAAATCCTAATAGAATTGTTCCATTTTTATCTANTTCCAA | |||||||||
gi|88380638|gb|CI521207.1|CI521207 CI521207 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GGGCTTGCAATTCCACAGTTGACCAAAATTCTTGATGAAATCAATGTATGGATAGCATGTGGGGCAAAAAAAACCTAGCGAGAATAGCGCCATGAGCAGCCCATAGTCCTTCTCTGCCTGCTCCCTGTACTCTGTTTTCATTTTCCATTCCCTTCTTTTCTCCTGCAGCCTTCCTAATGTTGTTCTCTTCTTCCTGCTGCTTTCTCGGTGCTTTTGTACAGTTTCTCCCCTTCTTAATATAAAACCAGCAAAGCTGGCATAGATTAAAAAAAAACATACTATGTCAAGATATACTATCCTATATTCTATGATGGATCTCATCCCATGCTAAGTTACTTTATTCTGGGACGGTTTATTCTGGGACGGAGGGAGTAGTTCCTTACAAGAAATGCAGTAC | |||||||||
gi|218485911|gb|FG946965.1|FG946965 MA_93-11_03860 Mature embryo cDNA Library of 93-11 Oryza sativa Indica Group cDNA 5', mRNA s TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): TGACTGCCTCTCGTCTCGCCTCGTCTTCCCCGTGCGAGCGGCTGCCTACCTCCCCTTCTCGCTGCGCCCCCAACTTGCCGCGAAGCAGCGGTTGTCCCCTCTCGTTCTCGCCGCCGGCTCGGCCCCGTCTCGCCTCGGCCGCCCATCCGCGCCTCCTCCGCGGGTCGCAGATCTGGATCAATTGGGACGGAGGGGGAGGACGCGCGCGATGCGGGTGGACGCGGCTTCCGCTACTTTCATTTTTCCTTTGCTAGTGAAAGGAGGTTTANTTTCTAACTTTCCATTGGGTATCNCGCTTGGACCATTGGCGGCTTCTCACAGCATGACTTAAAGTGGAAATGAATGCACATTCCATAAATGATTGCTTGATTTGCAGTTCTTGGAGCTGTGCACTATTATT | |||||||||
gi|87004192|gb|CI296734.1|CI296734 CI296734 Oryza sativa (japonica cultivar-group) etiolated shoot Oryza sativa Japonica Group c TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): TAATAGTCAAAATTAAAAATGTTTAATTTGCAACTATGCTAAAAATGCTAACATTTTGGGACGGAGGGAGTACTAATTATAGGGTACATGTATTTCATATTATTCCATACTATTATATTATTTTAGCAATAATTCTTTTCTTGACTTCAGCTATATCTGTTCATTCAATGAAAAAAGCGTGTAGCATGAGATCCTGCAAATGTTTTCAGATGATTTCACTTTATTATGTTAAAAACTGAATTGTAGTACTGTTCGTTTCTGCAGGCTTGAATATCATCTGTTACCACACTATTCATTCCTCTGCAGTTTGTACCATATGC | |||||||||
gi|88969591|gb|CI383094.1|CI383094 CI383094 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GGTAGAGAAGTTATATTTTAGAATAAATTCTAAGAGATAAAATTTGTTATATTTTGGAACGGAGGGAGTAAATCGGACTAATAAAACTACAAAATGTAACAAACACACTACCTCACCTAAAGCTAACCACCGCAAACTGAACTAGCAAGCTGGAAGAACTCTGCAAAATTTGCTACCTATCGACCTCGTCACCTCCGCTGTTTGTTTGCAGTCATTCGCAGCGGCAGCGATGGATGTTGCGGCCGCCGCGGGCGTCGTTGGTGGGTTCTTGCAGGTCGTCTTCGACAAGTACTACGGCTCCAAGCCTCGAGCAGTGGGCTGCTCGCTCGGGCCTGCACGGCGACTTCCTCAGCCTCAAGAACCAGCTCCACATGGTCCGTGCCATGCTCGAGGCAGGCGGCGGGGGCAACGCCCCCCACAACGACTCCCTGGGCAGCCTCATCGTGGAGCTCAAA | |||||||||
gi|88344171|gb|CI654601.1|CI654601 CI654601 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GGATTTTTTTTTGGGACGGAGGGAGTACTCGTCTTATCGTCTAGCATGCATTTCGGCATGCATCTGCAATACATATGTTTGCTGCAGTAATTTTGTTCTGCCGCGCAGTCGTGCAGGCGTACAGTCTTACCAGGCGTACGGCCGTACAGTCTTGAGTCCTTACCAGATACAGATAGCCGTACAGTCTTGCAGGCGTGCGGCCGGGGATCATGTCGGAGGGAGCGATGGGAAGAACTTCCATCATTGTGTAGTGAAACTTCTGTGTAACTTATGATGAGATCGTTGTGTAGTCGATCTCATCGATAGACACGAAAGTTGGCTTATGATGCTGAAGCTCGAGACGAGGGACGCCATAGATATAGTGAAACTTCTGTGTAAACGGCACCGAGAAGA | |||||||||
gi|88692803|gb|CI736378.1|CI736378 CI736378 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): ATGGTGATTCTCGCACTTATGTCGATACTCCCTCCGTCCCACAATATAAGGGATTTTTTGAGTTTTTGATTGCAACTTTTGATCACTCGTCTTATTCAAATTTTTTTTGTAAATATAAAAAACGAAAAGTTGTGCTTAAAGTACTGTAGATAATAAAGTAAGTCACAAATAAAATAAATAATAATTTCAAATAAATTTGAATAAGACGAGTGGTCAAACGTTGCAAGTAAAAATTCAAAATCCATTATATTATGGGACGGAGGGAGTATTTTTCTATAGGAAAGGTCCAACTTATACGACCTTACACACTTGTGGTTGTAGGAAAATCAATGCTAAACTACATAACTGAATATTTTACAGCCTTAGACCCATAAAA | |||||||||
gi|88256525|gb|CI358913.1|CI358913 CI358913 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): AAAATCCCTTATATTATGGGACGGAGGGAGTAGTTGCTATTTCAGACCTTCAAGTTCCAGTACATTGATCTAAAACAAAAAGTTACAATTTCCAATACCGTTACCTGGTAGAGCCAAACTGACCGTACTAATCTAGTGCAAATCAGATATTCCCTTGGCATATCACTTGATTCATTGTGCACCATGGTATATAAGCAGGTTTGCTTGTAAATCTTCATATTGGTAATGATATTTTATAACAATGGGGAGTCTTCGCTAACTCCCAATTGGGTAAGGATTTTCTTCTCCTTTGCTTGCCCGAATCAAAAGGCCATACCAGAGACATAGGCAAGAACATCCATATACGTGGCAATACAGTAAAAATTATCAGTTCGAGATTTCATCAGTTAAATATTTGATATTCTTGGATAAGTAAGCTATGGAATCACATTTCA | |||||||||
gi|88491141|gb|CI428413.1|CI428413 CI428413 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (9.5min), a TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GGCAGTGGAAAACATTTCCTTACCGTAGCAATAATGTTGCTTGCAGGTATAATTCCTAGGACAAAACTATATANTACTACCTCCGTCCCAAAATATAACAATTTTTAGCTATGAATCTGGACACACAGTTGTCTATATTTATAGTTAAAAATGCTTATATTTCGGGACGGAGGGAGTATATCATGACAGGAGAACGAATTCTACCCTACAACTTACTGATTTTCCCTGGTCTAATCTTCTGGGCCATCATGTCTTGAATTCCGTTCCAAAGATCATACTATGAACTAAGTGCAGGTTCTGTATGAGAGCTGAGGTGCCACTGATCAGCAGAGATCGCAGAATGATCTTTCTGGGCTTATGCAACTCTTTTCATCTTTGTTGTCCCCTCAGGAAAACCTATAATNCATACTACTTGTTAT | |||||||||
gi|33827490|gb|CF339563.1|CF339563 RCL1--05-E02.g1 Regenerated callus lambda phage cDNA library (RCL1) Oryza sativa Japonica Gro TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): AATAGAGCCATTGAGTGTGCCCACTGCGCAGTCTACACACTGCACAGCAACACACATGGCCTCCATCAAACTCTCCCTCGCATGTGTCCTCCTAATCTCAGGCCTCGTGATGCTGGAGAGGATCGAGCACACTGAAGCGGTCTGCACACTGTTCTGCGCTAAAGGGACGTACATCACCTGCAGCAACCATCCATACGAGCAGCTCTACGGGTGCGCCTGCAGATGCGCGCCGCCGGATGGCGTCGACTGCGTCGTCCATCTCGCCGACGGCTCCACGCAGCAGTGCTGATCGGAAAACGCAGGGAAAGGATGGTGTCGTCGTCGCTCTTCCACTTGCACGTTCTTGTGTGTGTCACTGTATGTGAATTACTTCATCTGTCCTAAAATATAAAGACTTTTAATTGGATGCGATATATTTCAGTACTACGAATCTGAATATACTCGTAGTATTAGGACGTGTTCCATCTAGCTAAAAACTCTTATATTCTAGGACGGGGGGAGTAAGTGGCTGCACGAAACCTGTGTGAGTCGTGTGGCCATACGTGTGCCTCCTTTGTGTCACTCCTTAAGGTGTGTTCGGAACTCCAAATTCCCAAATGCTGTAATAAAACGAT | |||||||||
gi|86883252|gb|CI328677.1|CI328677 CI328677 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GCTCAATTAAGTGTTCTTTGACAGCCTTCGTGTTTGACAGTGGAAAACATTTCCTTACCGTAGCAATAATGTTGCTTGCAGGTATAATTCCTAGGACAAAACTATATACTACTACCTCCGTCCAAAATATAAAAATTTTTAGCTATGAATCTGGACACACAGTTGTTTATATTTATAGTTAAAAATGCTTATATTTTGGGACGGAGGGAGTATATCATGACAGGAGAACGAATTCTACCCTACAACTTACTGATTTTTCCTGGTCTAATCTTCTGGGCCATCATGTCTTGAATTCCGTTCCAAAGATCATACTATGAAATAAGCGCAGCTTCTGTATGAGAGCTGAGGTGCCACTGATCAGCAGAGATTGCAGAATGATCTTCTGGGCTTATGCAACTCTTTTCATCTTTGTTGTCACCTCAGGAAAA | |||||||||
gi|88520100|gb|CI447754.1|CI447754 CI447754 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (4min), aft TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): CGAAGGAAAAGAGCGAATATAGTAGTATTTGATTTCAGTACATTTCAGTACAAGATTGTCGAAATGGTTTGTTCCACGGAGCTAGAGCCTAGGGTTGCAAACTGCTTTCTCTTCAGATACTCCTAGTTCATTGCTGCCCAAACATTTGACAGATTGACAAGAGCACTGAAATGGCCACAGCTGCGTTGCCACAACATTCCAAGAACCCATGACGCTCATTGGATGGATGACCAGTACATTTCGTGAACGAGCAGCCAACTTATACCTCTACCAGAGTACTGTCCACAGGAGCACACTGATGCAGTGGTATTTCAAATGTAACATACCCCTGTCCAGATTCGTTGTACTAGAATGTGTTCCATCCAGTTCAAGGTTGCTATATTTTGGGACGGATGGAGTAAACATC | |||||||||
gi|58031327|gb|CX728870.1|CX728870 OSJNEf14M06.r OSJNEf Oryza sativa Japonica Group cDNA clone OSJNEf14M06 3', mRNA sequence TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): CTCGCCTCCCAAGCGGCGCAGCAAAACGCACAGCAACCGAACGGCATGGAGGCGTACAACCGGATGATGGCAATGTACCAGAAGCTAAACCACCAGCAGCAGCAGCAGCAGGACCAGCCAAGCAACTCCAGACAATGATCGTGACATGGTACTTACTACAAGTAGTACATGTAAAATGCTAGTTGTTGTATTTGCACTGAATATTATTTTGCCTACTACCTCCGTCCCAAAATATAACAACTTTTGGCTATGAATCTGGACAACGGCTAAAAATGCTTATATTTTGAGACGGAGGGAGTAAATTCCTAATCTTGTGGTTAGATATGAAATAGTACGGCGTCACAACAACCGTGGCATGGTGTATATTTTTCTACCCTCTTTTCTTTAGAGGTGCACAGTATATTTATATTGTCTTGACCTGTATAAACCGGCAGATGGTCATGTACAGCTGTGTTTTTGTAGAGGCAAGCAATTGCACTTTGGTCTGATGGACCAGGTGGGGGTCAATTCATCATCTTGTCTGACTTTCGTCTCAAAAAAAAAGAGAAAAAAAAA | |||||||||
gi|87007244|gb|CI277319.1|CI277319 CI277319 Oryza sativa (japonica cultivar-group) mixed shoot (Normalized Library) Oryza sativa TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GAGTTGTAAAGCAGAGATAATTGTATTTTGGAACGGAGGTAGTAAAAATTATTATATTTTGGGATGGAAATAGTAGTTAATTAGTAGTGCATTAATTAAGAAGCTACTAGGCGAGGATGTCATGTTGATGATGGGCACGCACGAGCTGGTTGTCGTGGTCCTGCTTGTCCACTAGTACGGGTACGGCGGGCTGGTCGTCGTCGAGGTCGAGGAGGAAGCAGCTGCAGCAATGGTGCTCGAAGGTGTCGGCGGCGGGTTGCGGCAACGAGAGCAGGACGGTGACGGCGTTGGGGTCGGCGAGGACGGGGAGGAAGACGCAGTAAATCTCGCTGGTGAGGGGGCCCATGTGCGCCGCCCTCCCCTTGCCGAAGTCGACGTCCTCCAGCCCCAGCCGCGTCCACGCCGAGATGACCAGCGTCGCCGCCAGGTCCGGCTTGGCGCCGCGCCGCTGGTCGAGGAGGTCCACGGTGGATCGCACGTAGTCGTCGTCGATGCAGTCCTTGGCCTCCTGCACCAGCCGCACCCCGGCACCCGCCGCCAGCTCGGTCGGCGTGGCCTCTGCGCAGGCCAGCACGAAGGCGTTGCCGCAGTAGGTCCACGGGAGCTCCGGCTTGAGGCGGCGGCGCACGTTGACGGAGAAGAGGAGCTTG | |||||||||
gi|88550414|gb|CI478387.1|CI478387 CI478387 Oryza sativa (japonica cultivar-group) whole body 1mM ACC(1-aminocyclopropane-1-carb TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): AATATGATGGATTTGTATCTTAATTAAGTAACCTGAATACACCAGACTGTAAGAAAAACCGGAGGGATCCATGTCCAGATTCACAGTAAAGTGTCACATCCCTTCAAAATCTTTTATATTATGGGACGGAGAGAGTAGATGGAAGGTAATCTTATGTCGTATAAGAACTGGATACTCTAGAGTCCCATCCATGTACTTAACAAAAATGGCTCCAAGGTAACACCGGAGAAATGTGATTCACACCATCATTACGCATGCCAGATAGAGGTGAACATCTCTAATCTATCGCCATGCTGCCCAGCGAGGGGATCCAGGATGCTGACCCATGTGCTGTAGTCAATAGGCGATCCACCACCAGGCTGAAGGAATCCGTTCACAAAGAAGAACGGTGCACCGGCTAA | |||||||||
gi|86492961|gb|CI135594.1|CI135594 CI135594 Oryza sativa (japonica cultivar-group) mixed callus (Normalized Library) Oryza sativ TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): CCTTTTTTTTTTTTGCTAAGTTACTTTATTCTGGGACGGTTTATTCTGGGACGGAGGGAGTAGTTCCTTACAAGAAATGCAGTACGAGGACAGCGACTGACAGGGTCCAGAACTTCACAGCCAAATATACTATTACACATGCAGAAGGAGCGAGAGAGAAACAGGCAAATGCATGCCATCTGGCCCATCATCTCTAAGTAACATCTGCGATTATATTACACGTGAAGTAGACGAGAGAAATGGCAGAAGCCTGCAGGGATACAAATAGTGGCTTTGCCGGTGGCGAGCTCAGAAGTCCATGGGATCCTATCAGGCTGCCTGTCACCTAAACAAGCCAGCAAGCTAGGCACCGTCATGGAGAATTTCAGGGAGTGGCCACGTTTTCCTTGGCAAGTGGCGCCAGCTCCTCACCCTCGATGCCTGGCTGGCTCCCCTCAACGCCCAACCCAA | |||||||||
gi|88363670|gb|CI609027.1|CI609027 CI609027 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GGTTCGTCTCCTCTCTTCTCCATTTTTTTTCTCTCCTCTGCTTTTGAAGGAACTCGAGAAGCATCAGCCGCATCTCTACTACTACTACTACTACCCTTGCTCTGTCTGATCCAAGTCCAGGCAGCAGCTACCTAGCGTGGTGGTGGTGGAGTCGACGGGGATGGGGTGGTGGCCGCCGGCCTGCGTGGCGGCGGTGGGGGGTGGTGGTCGTCGTCGTGGCGGCGTTGATGGAGGTGTCGGCGACGGCGGCGGTGGAGGAGGAGTTGGGACGGAGGGAGAGTGGACTCTGCCCCCCGCGGCGCCACGCGCCC | |||||||||
gi|86536328|gb|CI176534.1|CI176534 CI176534 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): CACTTATTTTGGGACGGAGGGAGTATATTCCAGATAGGAGAGGCGGGCATCGATGCTTATCGTCGCTAAATTAAATGGGAGTACAGGCTAAACACATGAGACATCCCTCGATTTAAAAACAGATTACAAACACATGGATGTTCACTTCACACACACGACAAGCAGGAGGAGGAGCAGCTGCTGAAACAAAACGACCAGCGGCGAACTTAATTTTTTTGAAAAAGGGAGAATCATAACACGGTAGAACTCATCATCATGGCCAATTGCTTCATCAACGCCTTCCAGCCATTATCCCCCAACAATGGCTGCTCGAACTCCTTTGATATCACGCGTTGCTCCTGAAGGAGCCGAGGGCTTTGATGGCGCCGGCCCGGAGGATGTACTGGTGGTAGAACGCCGCGATGGCGGCGCCGACGAACGGGCCGACCCAGAAGATCCAATGGTTGTGCC | |||||||||
gi|117243433|gb|CT843464.1|CT843464 CT843464 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): ATCAGTATAGACAGTAGTGAGAACAGTTCAGAGAGGAAGCATGTGACACTTCCCTCTGTCCCTCTCTCTCTCTCTAGCCTCCAACCATCGCTTCACCAAGAAGCCATCACCTCCTCCTCTCTATCAAGTTCTCTCCCCTCTCTTGCTGTCTCTGCTTGCTGCTGCTGCTGCTCGATTCGGCCGGCGGCCATGGCGTCCAGCGCGTCGCGGTTCATCAAGTGCGTCACGGTCGGGGACGGCGCCGTCGGCAAGACCTGCATGCTCATCTGCTACACCAGCAACAAGTTCCCCACTGATTACGTACCCACTGTTTTTGACAATTTCAGTGCAAACGTGGTGGTCGACGGCACCACGGTGAATTTGGGTCTCTGGGATACTGCAGGGCAGGAAGATTACAATAGATTGAGGCCGCTAAGCTACCGTGGCGCCGATGTCTTTGTGCTTGCCTTCTCCCTAGTGAGCCGAGCTAGCTATGAGAATGTCATGAAGAAGTGGTTACCAGAGCTTCAGCATTATGCACCAGGGGTGCCAATTGTGTTGGTTGGGACCAAATTGGATCTTCGTGAAGATAAACACTACTTACTTGACCATCCTAGCTTGGTGCCTGTGACTACAGCACAGGGAGAGGAACTCCGCAAGCACATTGGCGCAACGTGTTACATCGAATGCAGCTCAAAGACACAGCAGAATGTAAAAGCTGTGTTTGATGCTGCCATCAAGGTAGTAATCAAGCCTCCAACAAAGCAGAGGGACAGGAAGAAGAAGAAAACACGGCGCGGATGTTCTTTCTTCTGCAAGGGTGTCATGTCCAGAAGAAGGCTAGTATGCTTCAAGTGAACAAGAGGGGTTCTTTGATGAGCAGAGCAGAGGTCTGTGAGACAAAATGATGTCTTGTGTTTGATAATTGCTTTATCTCAAAAGTTCCAGTTTGATAGTTGCATTTCCAACCTATATATATCCTGTTTGGCAATTAACTACTACCTCCGTCCCAAAATATAACAACTTTTGACTATGAATCTGAACGCACAGTTATCCAGATTCATAGCTAAAAATGCTTATATTTTGGGACGGAGAGAGTACTATAGTAGATTACTATCCTGTCCATGTAATGTATTAGGAAGGTTAATAGCACTCCCTACATCTCAGAATGGAAGATGTTTTGGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCTTTTGCCCCCGGGGGGGGGCCCGGCCCCCATTTCCCCCAAAAGGGGGGAAAAAAACCCCCCCCCCCGGGCCCCTTTTTTAAAACCCGGGGGGGGGAAAAACCCGGGGTTTCCCCAATTTATCCCCTTTGGAACAACCCCCCTTTTTCCCCGGGGGGAAAAAAAAAAAAAGCCCCCCCCCGTTCCCCCTCCCCAAAATTTGCCCCCCCTAAAGGGGAAAGGGGACCCCCCCTTAACGCCCCCAAAAACCGCGGGGGGGGGGGGGTTTCCCCCCACGGGGGCCCTTACTTTTGGCAGGCCCCAAAGCCCCCCTTTTTTTTTTTTTTTCCTTTTTTTTTTGCCCCGTTTTGGGGGTTTTCCCCAGAAAATTTAAAAGCGGGGCCCCCCTTTGGGGTTCCAATTTTGGGTTTTCCGGCCCCCCCCCCCCAAAAACTTTTTAAAGGGGGGGGGGTTTCCCTAAGGGGCCCCCCCCCCAAAAAAAAGGTTTTTCCCCC | |||||||||
gi|86842520|gb|CI341692.1|CI341692 CI341692 Oryza sativa (japonica cultivar-group) flower Oryza sativa Japonica Group cDNA clone TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GTGGAAATTTTTGTTCTTATCTATTTTTGCTTTCTTCTGCGTATGCTCAATTAACTGCTCTTTGACAGCCTTCGTGTTTGACAGTGGAAAACATTTCCTTACCGTAGCAATAATGTTGCTTGCAGGTATAATTCCTAGGACAAAACTATATACTACTACCTCCGTCCCAAAATATAACAATTTTTAGCTATGAATCTGGACACACAGTTGTCTATATTTATAGTTAACCAATGCTTATATCTTGGGACGGAGGGAGTATATCATGACAGGAGAAAGAATTCTACCTACAACTTAGTGATTTTTCCTGGTCTAATCTTCTGGGCCATCATGTCTTGAATTCCGTTCCAAAGATCATACTATGAACTAAGTGCAGTTTCTGTATGAGAGCTGAGGTGCCACTGATCAGCAGAGATTGAAGAATGATCTTTCTGGGCTTATGCCACCTCTTTTCA | |||||||||
gi|88331145|gb|CI639556.1|CI639556 CI639556 Oryza sativa (japonica cultivar-group) leaf of seedling 10mM H2O2 (10min), 24hr afte TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GGATTTTTTTTTGGGACGGAGGGAGTACTCGTCTTATCGTCTAGCATGCATTTCGGCATGCATCTGCAATACATATGTTTGCTGCAGTAATTTTGTTCTGCCGCGCAGTCGTGCAGGCGTACAGTCTTACCAGGCGTACGGCCGTACAGTCTTGAGTCCTTACCAGATACAGATAGCCGTACAGTCTTGCAGGCGTGCGGCCGGGGATCATGTCGGAGGGAGCGATGGGAAGAACTTCCATCATTGTGTACTGAAACTTCTGTGTAACTTATGATGAGATCGTTGTGTAGTCGATCTCATCGATAGACACGAAAGTTGGCTTATGATGCTGAAGCTCGAGACGAGGGACGCCATAGATATAGTGAAACTTCTGTGTAAACGGGACCGAGAAGAAGCACCTCGCT | |||||||||
gi|88197282|gb|CI197132.1|CI197132 CI197132 Oryza sativa (japonica cultivar-group) root of seedlings Oryza sativa Japonica Group TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): TTTTAACAAAAAAAAAACTCAAAATTCATATTATGGGACGGAGGGAGTACTCTCGGGTTTCTCGGTCACATCTCTCTCTCGGTCTCTCCTCTGGCCTCTTCACGCGTTGCCTGAGAAGGAAGACGCCAACGACGGCAGTCGGAACGGGACGGCGATGGGGGGAAGAGAGTGGAATAAGGGAGCAGCGCCGGTGGGGAAAGGGAGGCTGGGGCGCTGGCTGCTCGGGCTGGGCGGCGTGGCAAGAGGCGGCACGACGGCGCTCGGCGCTTGGCGCGGCGGCACGGCCGGCGTCCGGGAGCCAGGGACGACGGCGACGGCGGAGAAGAGGAGGTGGCGGCACGAGGAGGAGACTGCCTCGGCGCTGTCGGCGGGGCTGTGCCCGGCTGAGCTCCGGCCGGCCAGCGTGGTGGAGGGAGGGCGGTGGAGATCAGGGAGACGGGAAGAGGAGGCCGTGTCCGTGGTCGGCGACCTGGTGACGGCGTTCGTCCCGGCACGGTGACGCCGCCACGCGCAAGGGCGGAGGCGTGCGGGATGACTTGGCCGCGCGCGGGGCGGCGCTTGCGGCAGGCGGTACTCCACTCGGAGCGGCGGTGACCCAGATCAAGGTGACGATGGCGGCGGAGGTTGCAGTAGCCCCTCGGATGGGCGGT | |||||||||
gi|88362402|gb|CI644478.1|CI644478 CI644478 Oryza sativa (japonica cultivar-group) 11 days after transferring callus Oryza sativ TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): GTTCTTATATTTTGGGACGGAGGGAGTAGAATTTAGCCCCAGTTCCTCACCTTCACAACTGTGTGCATTCACATCTCCTTTGTTGGATAAACATTTGCTGCTTTTCCAGTTGTACTTGATACAAACTATTTTATTTGTACTGGTGTAGGATTTGTTCAATCTTTCCTTTCAGTTCAGTTTTACAGGAATGGAGATATATCAGTATGGGGTTACATGCATTACAGTTTGATATTGTTCTGACTAAGGTTTAGGTTTTGTTTTTTACCAGATTGTTCGTCAAATTATTTTCCTTCAAAGTTAAATGACTGCAAGATTGGAGAACATTATTTTCGATTACATTTATATATGAAAGAGTCGTTCACAAATCAATGCGAGTGCACTTACTCTTTTTGGT | |||||||||
gi|60672986|gb|DN475675.1|DN475675 trse247 Rice SMART cDNA library Oryza sativa Indica Group cDNA 5', mRNA sequence TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): TGGGAGCGCGCTACGTGGTGACGGGAATCGGCATTACGGCCCGGGGTTCATCCCATCTAGGTTGCTATATTCTGCTCCTAGGTGCTATATTCTGGGACGGAGGTAGTATCAGCTATAAAAATAAAAATGAATTAATATGATATTTTTAAAAACTCCTATATATGTTTTTTTTTTAAAAAAATGGCTTATTGTTTAGTAGTTTGGGAAGCGTGCATGC | |||||||||
gi|86431677|gb|CI085288.1|CI085288 CI085288 Oryza sativa (japonica cultivar-group) Cd treated callus Oryza sativa Japonica Group TCTCCCTCCGTCCCAAAATAT EST sequence (targeted fragment marked with yellow): TTTTATTTTGGGACGGAGGGAGTATATTCCAGATAGGAGAGGCGGGCATCGATGCTTATCGTCGCTAAATTAAATGGGAGTACAGGCTAAACACATGAGACATCCCTCGATTTAAAAACAGATTACAAACACATGGATGTTCACTTCACACACACGACAAGCAGGAGGAGGAGCAGCTGCTGAAACAAAACGACCAGCGGCGAACTTAATTTTTTTGAAAAAGGGAGAATCATAACACGGTAGAACTCATCATCATGGCCAATTGCTTCATCAACGCCTTCCAGCCATTATCCCCCAACAATGGCTGCTCGAACTCCTTTGATATCACGCGTTGCTCCTGAAGGAGCCGAGGGCTTTGATGGCGCCGGCCCGGAGGATGTACTGGTGGTAGAACGCCGCGATGGCGGCGCCGACGAACGGGCCGACCCAGAAGATCCAATGGTTGTGCCACGCC | |||||||||
gi|88461327|gb|CI547507.1|CI547507 CI547507 Oryza sativa (japonica cultivar-group) root of seedling gamma-irradiated (4min), aft TCTCCCTCCGTCCCAAAATAT |