| mature miRNA: TCTCGATCTCCGCCGCTACAT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164272810|gb|ES831199.1|ES831199 UFL_465_37 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCTCGATCTCCGCCGCTACAT EST sequence (targeted fragment marked with yellow): GGCACGAGCCTACCCGCTACGACAAAAATTAACTCCTTCAAAGCCAGTTGAAAAAGATTAAGGAAATCCATCGTGGAATTCTTGGTATTAAACATTGAGCTCGCTCTGTGATGCGATCAATGGTGTTTTCCGGTGAGAGAGGGATGGCGATGGGACCCGAGAGATCAAAACCTCTTCACAATTTCAACCTTCCTTGTTTGAAGTGGGGCAATCGGAGATATCTCAGGTGTATGAAACTTGACGATGCTTCCACCGCCACCGACTCTTCCACCGCCCCCCCTGCTGATCACAACCAGCATTGTCGTCGCCGTGTCCTTCAAAGACGCCGATCTCCCCCCTCTAAGTTTGACAGTTTGATGGTTGGTGGAATGCGGCGGCGCGAATCAGAGTCATCTCCCAGCAGCAAGAACACCGATTACGCTAGGGAGCAGCGGTTGAGGATATCTAAGGGGGAGGCGGCGGCGGGGATCGAGGCAGTTAGGGAGAAGAATCATTAGGATCTTAAAACGGCGGCGGATGAGATCNNAAGATGCATTTTTAGAGACGAAGTGTCCGACGACGATGAGGTGGATGACGACGATGAGGAATNTGAAGAGCCTAAACATAAGCACACAGTTAAAGATGAAGAGAGGGAGGAATCGCCTGCGGTACAGGTGGACGCGAGGCCGTGGAATCTGATGACATGCGTGCCGCGTGTANCGCTCCGGTTGACTGAAAATGTACTAACTACAATTACAGTTCTCCGATGAGGAATGANGTGTTCACTCAT | |||||||||
gi|109863176|gb|DW492153.1|DW492153 GH_RMIRS_089_H05_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TCTCGATCTCCGCCGCTACAT EST sequence (targeted fragment marked with yellow): TCTGTCAAGGTGCATGTTAGTAAACCTGCGCCGGTAGTTTCTCTCTCGAACCGGAGGCAGCTTCTGTTCTTTCTGACTACAACGACGGCACTGGCAGTTAGAGAGCGGGAATCGAATGCGGAGGATATTCCGTTGTTCGGTTTTAGAAAGAAGTTGAAGAGCGCGGAGGAAGAAGCGGTGGAGATCGTGAAAGAAGGATTGGAGACGGCGGAGAAAGGGCTGGAGACGGCGGAGAGAGGGATCTTTACAGTGGAGAAAGGGTTGAAGACGGCAGAGAAGAAGATAGAAACAGCTGAAAAGGGGATTGAAAGTGCCGTTGGTTTTGGCGCGTTGGCTCAGGCTGGTGCTGTGGCGGGAGCCGAGTTTCTCGGTGTTGTGGTGGCTACTTCTATTGTTAATGGAGTTTTAGCGGCTGAGGCCCCAAAACCATGATTTTGTTAACGAAATGTAGTTATTTATTTTATTTTAATTAAGTTTAATTAAATAATACAGTATCCTAATTTTTTTCCTAATCATATATTTAAATTATAATTCCGTCCTTTGTCTCGTCCTCTGCCTGATG | |||||||||
gi|164257503|gb|ES817127.1|ES817127 UFL_284_14 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCTCGATCTCCGCCGCTACAT EST sequence (targeted fragment marked with yellow): GGCACGAGGTTCGTTGAGAGATGAGGAACAGAGAGTAATGGGAAAAGAAGAAGTGGAAGAAGAAGAGAAGGAAGAGGAAGAGCCTATATTAAAACAACAAAACCAAAGGTTTTGTATGTTTCCCATTACCTATCAACCACTTTGGGAGATGTACAAGAAGGCTGAGGCTAGTTTTTGGACTGCTGAGGAGGTTGATCTCTCACAAGACGTGCAGCATTGGGAAACCTTGTCTAGCTCAGAAAAACACTTCATAAGCCATGTGCTGGCCTTTTTTGCTGCATCTGATGGGATAGTTTTGGAGAACTTGGCTGCAAGATTCCTAAATGATGTTCAAATTCCAGAGGCCCGGGCATTCTACGGATTTCAAATTGCTATGGAGAATATCCATTCTGAAATGTACAGCTTGCTTTTGGAGACATATATCAAGGATTCCAAAGAAAAACATCGATTGTTCAATGCTATTGAAAGCATCCCTTGCGTCAGTAAGAAGGCTAAATGGGCTATGGATTGGATTCAGAGTTCCACTTCATTTGCAGAGAGACTTGTGGCTTTTGCATGTATTGAAGGAATCTTCTTTTCTGGAAGCTTTTGTGCCATTTTCTGGCTTAAAAGAGGGGACTGATGCCTGGTTTGACATTCTNCAATGAGCTTATATCTAGAGATGAGGGGCTTCACTGTGACTTTGCTTGCCTTCTTTACGGGGTTGCTGCAGAAGCAACTTTAATGGCAAAAAGTCCATCATATTGTTCATGAAGCAGTGGAAATCGAGACTGAGTTCGTGTGTGAAGCTCTTTCCTGTGCACTTCTTGGCATGAACTCGACACTCATGAGCCAGTACATTAAGTTTCGTGCTGATCGTCCTTCTGGTTCATTGGGGCTGGCAAAAAAATACAGCGTCAAAAATCCCTTTGATGGATGGGATTAATATCTTTAACAGGAAAAGCTAACTCTTTGAAAGGAGGGTGGTGATTATCAGAAGCATCTGTATGTCAGCCCTCAAAACGGAGTAAAACTACTTTTTCAACTAAACGAAAACTTCTAATCACCCCCATCAATCTATTTCCCTTTGTTGCGCCCTGCCAGGTTTATAAAAAAGGCTGGCCGTTTTGGGTTTAAAAAAATTCTTTTGAGATAAGGTTGTTTTTTCTTTTATATATCTTTTTTTTTTTCCCCAAAATTTCCAAAACACAACATTTCCCCCCCCCCGCCCACAAAAAAAATCTATATAATCTTGGGTTTTTTATGTGTTTTTTTTTTTTCCCGTGGGGTTTTTTATTATAAATTTTTTTTTTCTCAGGGGGGGGGAAAAAAATAAAA | |||||||||
gi|109887447|gb|DW516416.1|DW516416 GH_TMIRS_201_D06_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TCTCGATCTCCGCCGCTACAT EST sequence (targeted fragment marked with yellow): AGGGCATTCTACGGATTTCAAATTGCTATGGAGAATATTCATTCTGGAATGTACAGCTTGCTTTTGGAGACATATATCAAGGATTCCAAAGAAAAACATCGATTGTTCAATGCTATTGAAAGCATCCCTTGTGTCAGTAAGAAGGCTAAATGGGCTATCGATTGGATTCAGAGTTCCACTTCATTTGCAGAGAGACTTGTGGCTTTTGCATGTATTGAAGGAATCTTCTTTTCTGGAAGCTTTTGTGCCATTTTCTGGCTTAAAAAGAGGGGACTGATGCCTGGTTTGACATTCTCAAATGAGCTTATATCTAGAGATGAGGGGCTTCACTGTGACTTTGCTTGCCTTCTTTACGGGTTGCTGCAGAAGCAACTTAAATGGCACAAAGTCCATCATATTGTTCATGAAGCAGTGGAAATCGAGACTGAGTTCGTGTGTGAAGCTCTTCCTTGTGCACTTATTGGCATGAACTCGACACTCATGAGCCAGTACATTAAGTTCGTTGCTGATCGTCTTCTGGTTTCATTGGGCTGTCAAAGAAAGTACAGCGTCGAAAATCCCTTTGATCGGATGGAATTTATATCTTTACAAGGAAAAGCCAACTTCTTTGAGAGGAGGGTTGGTGATTATCAGAAAGCATCTGTAATGGTCAGTCTTTCAAAATGGAGGTAAAAACTA | |||||||||
gi|193218487|gb|EY197716.1|EY197716 BC_007_23 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequen TCTCGATCTCCGCCGCTACAT EST sequence (targeted fragment marked with yellow): AAACTGGAACTCGCGCGCCTGCAGGTCGACACTAGTGGATCCAAGAATTCGGCACGAGAAGAAACCTACCCGCTACGACAAAAATTAACTCCTTCAAAGCCAGTTGAAAAAGATTAAGGAAATCCATCGGGAATTCTTGGTATTAAACATTGAGCTCGCTCTGTGATGCGATCAATGGTGTTTTCCGGTGAGAGAGGGATGGCGATGGGACCCGAGAGATCAAAACCTCTTCACAATTTCAACCTTCCTTGTTTGAAGTGGGGCAATCGGAGATATCTCAGGTGTATGAAACTTGACGATGCTTCCACCGCCACCGACTCTTCCACCGCCCCCCCTGCTGATCACAACCAGCATTGTCGTCGCCGTGTCCTTCAAAGACGCCGATCTCCCCCCTCTAAGTTTGACAGTTTGATGGTTGGTGGAATGCGGCGGCGCGAATCAGAGTCATCTCCCAGCAGCAAGAACACCGATTACGCTAGGGAGCAGCGGTTGAGGATATCTAAGGGGGAGGCGGCGGCGGGGATCGAGGCAGTTAGGGAGAAGATCATTAAGGATCTTAAAACGGCGGCGGATGAGATCAAAGATGCAATTTTTAGAGACGAAGTGTCCGACGACGATGAGGTGGATGACGACGAGGAGGAATTTGAAGAGCCTAAACATAAGCACAAAGTTAAAGATAAAGAGAGGGAGGAATCGCCTGCGGTAGAGGTGGAGGCGAGGCCGTGGAATCTGAGGACAAGGCGTGCCGCGTGTAAGGCTCCGGTTGACGGAGAAGTAACTAACAACAATTACAGTTCTCCGATGAGGAATGAGGTGTTTCAGTCATCCAGAGTAAGAGACAAGGGACCACCGGCGGCATCGGCGGTGGCCTCCGACAAGAAAAGCCACGACCGAAATTTTCGGTGCCGCTATCGAAGAAAGAGATCGAGGAGGATTTCATGGCGATGGGCGGGCACCGCCCTCCGAGAAGACCAAAGAAACGCGCACGCATTGTTCAGAAGCAATTGGATTACTTGTTTTCCCGG | |||||||||
gi|20428753|gb|AF373212.1|AF373212 AF373212 Gossypium hirsutum cotyledon Gossypium hirsutum cDNA similar to ATP-dependent DNA he TCTCGATCTCCGCCGCTACAT EST sequence (targeted fragment marked with yellow): GATGCTACCGGAAGCGTTGCGCACTTTGCACCGCCCGCCACCGACGCTACAGCTTAGCGATCTGGAAACCGGGCAGCATCCGGCGCAACGTCGTCTGATTCTGGAAGAACTGCTGGCGCACAACCTCAGCATGTTAGCCTTACGTGCCGGAGCACAGCGTTTTCATGCCCAGCCGCTGAGCGCCAATGACACACTGAAAAATAAACTCCTCGCCGCCTTACCGTTCAAGCCAACGGGCGCACAGGCACGCGTAGTGGCGGAGATCGAGCGCGATATGGCGCTGGATGTGCCGATGATGCGTCTGGTGCAGGGCGATGTAGGTTCCGGTAAAACGCTGGTCGCCGCCCTCGCCGCGTTGCGTGCGATTGCCACGGCAAACAGGTAGCATTGATGGCACCAACCGAATTACTCGCCGAGCAGCACGCCAATAACTTCCGCAACTGGTTTGCACCGGCTCGGTATCGAAATGGGCTGGCTCGCCGTTAAGCAAAAAAAAAAAA | |||||||||
gi|164323099|gb|ES829834.1|ES829834 UFL_220_58 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCTCGATCTCCGCCGCTACAT EST sequence (targeted fragment marked with yellow): GGCACGAGCAAAGAAGAAACCTACCCGCTACGACAAAAATTAACTCCTTCAAAGCCAGTTGAAAAATATTAAGGAAATCCATCGGGAATTCTTGGTATTAAACATTGAGCTCGCTCTGTGATGCGATCAATGGTGTTTTCCGGTGAGAGAGGGATGGCGATGGGACCCGAGAGATCAAAACCTCTTCACAATTTCAACCTTCCTTGTTTGAAGTGGGGCAATCGGAGATATCTCAGGTGTATGAAACTTGACGATGCTTCCACCGCCACCGACTCTTCCACCGCCCTCCCTGCTGATCACAACCAGCATTGTCGTCGCCGTGTCCTTCAAAGACGCCGATCTCCCCCCTCTAAGTTTGACAGTTTGATGGTTGGTGGAATGCGGCGGCGCGAATCGGAGTCATCTCCCAGCAGCAAGAACACCGATTACGCTAGGGAGCAGCAGTTGAGGATATCTAAGGGGGAGGCGGCGGCGGGGATCGAGGCAGTTAGGGAGAAGATCATTAAGGATCTTAAAACGGCGGCGGATGAGATCAAAGATGCAATTTTTAGAGACGAAGTGTCCGACGACGATGACGTGGATGACGATGAGGAGGAATTTGAAGAGCCTAAACATAAGCACAAAGTTAAAGATAAAGAGAGGGAGGAATCGCCTGCAGTAGAGGTGGAGGCGAGGCCCTGGAATCTGAGGACAAGGCGTGCCGCGTGTAAGGCTCCGGTTGACGGAGAAGTAACTAACAACAATTACAGTTCTCCGATGAGGAATGAGGTGTTTCAGTCATCCAGAGTAAGAGACAAGGGACCACCGGCGGCATCGGCGGCGGCCTCCGACAAGAAAAGGCCACGACCGAAATTTTCGGTGCCGCTATCGAAGAAAGAGATCGAGGAGGATTTCATGGTGATGGCCCGGGCACCGCCCACCGAGAAAGGCAAAGAACGGTCACGCAATGGTCAGAAACAATTGGAATACTTGTTTCCCGGATTGTGGCTGACCGAGGTACGGCGGATGCCTACAGGTTTCCGAATTTGGCGAAAAACGCAAGAAGTAATAAAAAGGGATTTTCAACTTGCAACAAGCTCCAATTGGAGGCTTTCCGGTTTCCCGACTTGAAGGTAAATTTTTGGGAAACGGTAATTTAATCCCTCCCCCGAAAAACAGGGGAAAACCCACAAACCTTGGGGGGGGAAAATCTTAAGAAAAATTTTCCCAAAAAAAACAAAAAAAATTTTAAAATTTTTTCCTCTTTTTTTTTTTCTTTTTTTCGTGGGGGGTGAGAAGGGTGTTTCTCGCTTTTTTCTCCTTTTTTAAAAAAA | |||||||||