| mature miRNA: TCTCGCCGGCGCGCGCGTGCG species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|268782583|gb|DN194941.1|DN194941 SUM01-022F-F06-047.b Sugarcane mature leaf tissue library Saccharum hybrid cultivar CoS 767 TCTCGCCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CGAGCACCACCGGTGCTCCGGCGTTCCGCTTCCTCCCGTCCGAGGTGGCGGAGATGGAGGCGCGCCTGCAGCAGCTCAACAACGGCATCCCCAGCCGCGGCGTGCTCCAGACCCTCGCCGATAAGTTCTCCGCCTCGCCCGAGCGCGCCGGCAAGGTGGCCATCCAGCCCAAGCAGGTGTGGAACTGGTTTCAGAACAGGCGCTACTCGCACCGGGCCAAGTCCACCAGGGCCGCGCCGTCACCGCCGGCTAAAATGACGCCCTCGGGGGCCGATCACCACCAGCACGCCGCCAACGCCTCCGCCTTCAGGGCCGCTCAGCCCTCTTCTGTCGCTGCTGCGCACCATGGCTCCTCCCCAACAGGGAAGAACCCTGTGGAAGGTGTCTCGGTTGAGTTTGAGGCCAAGTCAGCTCGTGATGGTGCATGGTATGATGTTGCTGCCTTTCTGTCACAAAGGTTGTTTGAATCCGGTGACCCGGAAGTGCGGGTTCGTTTTTCTGGATTTGGGGCAGAGGAGGATGAATGGATCAACGTTCGCAAATGTGTGCGACAACGTTCTCTTCCATGCGAGGCCACAGAATGCGTTGCTGTGCTTCCTGGGGACCTCATTCTTTGTTTTCAGGAAGGTAAAGATCAGGCTCTCTATTTTGATGCTCGTGTCCTTGATGCTCA | |||||||||
gi|36059838|gb|CA295431.1|CA295431 SCRLLV1024C02.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCRLLV1024C02 5', mRNA seque TCTCGCCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CCCCGTGACGGCTCCTCGCCACTCGCCTCGTTTCTCCCTGCCGCGTCGCCTCCAGTTGCGACGCCAGCGCGCCTCCCGCCTCCGCCGCGCCTGACGAGCTCGGTGTACAGGACTGCGCAGGGGAGTAGGTAGAGAGGAGGAGGAGGGTCCGGCGAGATGGGGATGCGAGATAAGAAGCGGAACCAGAAGCGGGTGCTGGCGCGCCGTACCGCGGCACCGCGCGCCGGCGAGGGCAAGGACTTCCTGCCGTTGGAAGGAGGCCCCGGGAAGAAGCTGCGGAAGGTGCAGCAGCCTGAAGAGCCCGAGAACACTGCCACAGTCGTCTACATAGGGCATATCCCCCATGGCTTCTACGAGGACGAGATGCAAGGGTTCTTTAAGCAGTTTGGGGATATAAAGAGGCTTAGGATTGCCCGGAACCGCAAGACAGGAAAGTCCAAGCACTATGGATTCATTGAGTTTGAGAGCCCTGTTGTGGCAAAGATTGTAGCTGATGAGATGAATAACTATCTCTTGTTTGAGC | |||||||||
gi|35991072|gb|CA274602.1|CA274602 SCQSLB2054E02.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCQSLB2054E02 5', mRNA seq TCTCGCCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): TTCGCCTGCACCTACCCCGGTCCGGAATTTGCAGGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGAGCTTGTTTCAAGATGGATGAACGCCCGGGCCTTAGGTATTGGAGCACCANGTGACCGGAGGTGCCACCTCCTTTCCGTTTCTCCCCCGCCCACCTTGACAGCTCCGCTTCTCCGACAACACAGCCCACCCCCATCCTAGTAGTTTCCCCGAACCCTAGCCCACCGACCCCGCGCCTTCTCATCGTCTTCATCTCGCCCACCTCCCTCGCGCTCCTCGCCTCCCCGCCGCCGCTCCACGCGTCCCTTCTCCTCCCGGACCTGCCCCTGCACCCGCACCCGCACGCGCCCATCCGCGTGTACCACCACCCTTCCGGTGCGCTCCTCGCCGCGGCGCACGGCGCCGTTCCTGCCCACCGCGCGCGCGCCGCCGAGAAGGCACTCGTTTCGAGGCTCCAGCCGGAGGAGGTGCTGGTCCTGGACGCGGTCCGGAGCGGGTCGTACCGGGGCCGCCTCGCCGGGGACGAGCCCGTGGAGGGGAAGCTGGAGACCCGCGCGGCGCGCGCCCCGGGAAGCGTGGGCCCGGACAGGGCCGTCTCGGTGCTTGCCCCCCCCTGGGAAGAGTTGGTAGGACGGTGTTCTGTAGCCCGACGTGGCTTCAGGGGAGGTGCTAAATAATTCCCGGGAAAAAGGACACCTCTCAGCCCTCGTGTGGGGGAAACTTTTGGTAACAAGGAATTTTCTACTCCCAAAATCCTCCAG | |||||||||
gi|36055137|gb|CA293853.1|CA293853 SCSGLV1008C04.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCSGLV1008C04 5', mRNA seque TCTCGCCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CGCCTCCAGTTCCGACGCCGGCGCTCCTCACGCCTCCGCGGCGCCTGACGAGCGCAGTGTACAGGACTGTGCAGGTAGAGAGGAGGAGGGTCCGGCGAGATGGGAATGCGAGATAAGAAGCGGAACCAGAAGCGGGTGCTCGCGCGGCGTACCGCGGCACCGCGCGCCGGCGAGGGCAAGGACTTCCTGCCGCTGGAAGGAGGCCCCGGAAAGAAACTGCGGAAGGTGCAGCAGCCTGAAGAGCCTGAGAACACCGCCACAGTCGTCTACATCGGGCATATCCCCCATGGATTCTACGAGGACGAAATGCAAGGGTTCTTTAAGTAGTTTGGGGATATTAAGAGGCTTAGGATTGCTCGGAACCGCAAGACAGGAAAGTCCAAGCACTATGGATTCATTGAGTTTGAGAGCCCTGTTGTAACAACTTTGTTTCATATCTCATTGCAGGAAATGTATAGCTATTGCTGGTTGCTTACAACTTGGGTCATGTGCTTTGGGTGTAACAGGTGGCAAAGATTGTAGCTGATGAGATGAATAACCATCTCCTTGTTGAGCACACCTTGCAAGTTTCACTTGTTCCGGCAGACAAAGTTC | |||||||||
gi|36034820|gb|CA287319.1|CA287319 SCMCSD2060B08.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCMCSD2060B08 5', mRNA seque TCTCGCCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CCTCTCTTGCCCAGCCCCCTACGAGAGGGCGAGAGCGAGAGGAGTCGCGCCGGCGCGCCGGCTAGAGCGCGAGGCAGCCGTCCCGCCGCGATGAGGGCCAAGTGGAAGAAGAAGCGGATGAGGCGGCTCAAGAGGAAGCGCCGAAAGATGAGGCAGAGATCCAAGTAGGCTGGTCCATGCAGTGTCAGCTCGAGTCTTTGCGTTCGGTTGCTGTTTACTAAATAATGCTAGTTTTCTTAGTAACGGCGTCTTCTGTACTGTATCTGAAGATTTTTACAATCCGTCTATCCGTGATCTGTAATGAAGCCTGCCGTCATCTGAATATGGTTCCGAAACTTTTTTCCCCC | |||||||||
gi|268785938|gb|DV635635.1|DV635635 SUR01-125-H05-A-044.b Sugarcane root library Saccharum hybrid cultivar CoS 767 cDNA clone SU TCTCGCCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): ACACATATTCCCTGCCCCTCGCTAGCGCCTTCCGCGAACCGAAGGCTCCCGAGACAACCGCGATGTCCGCCATGGAGACCGACATCAACGCGCCGCCGCCGCCCGCCCCCGCCGGCGAGGGATCATCCGCGCCCGGTCCGTCCTCCTCCTCCTCCCGCAAGCCCAACAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCGCGCTCTGGGCATGGAATATCGTCGTCGACAACTGCGCCATCTGCCGCAACCACATCATGGATCTATGCATCGAGTGCCAGGCGAACCAAGCCAGCGCGACTAGCGAGGAGTGCACTGTCGCTTGGGGTGTCTGTAATCATGCTTTTCACTTCCATTGCATCAGCAGGTGGCTTAAGACTCGCCAAGTGTG | |||||||||
gi|36020275|gb|CA284019.1|CA284019 SCMCSD1062B11.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCMCSD1062B11 5', mRNA seque TCTCGCCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CTTAACCCGCGAGCTGAGGAGGAGCAGGACGGCGCCCCACCCCCACAGAATTTCTCTCTCGTCCACCACCACCACCAGCTGAGCTCATCAGGTCGGCGTGGTCGGAGAAGAAGAACCTGCGTCTCGTCGCTAGCTGCCGCGAGGAGACGAGCGAGTGAGACAGGTGCGCGTGCGCCGGCGAGGATCGGATACTTGGATTGGATTGGATCCACCTGTCGTCGTCGATGGGGATCCACCTGCTGGCGTTCGTGGCGGCGAGGGGCTTCCTGCAGGTGTTCCAGGTGTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTGGCTGCCGCTCGCGCGCCACCTGCCCGAGGCCTGCGCCGCCTTCTACGACGCCCTCGTCTCGCACGCGGGCCGCCTGCGCGCCACCGTCCGGCGCCACCGACGCGACGGCGGCAGCCGGAGCGCCCTCGACGAGTACCTCCGCAACGCCACGATGCTAACGCTCTCCGACTGAAGGAAGAGACTGAGCCGAGCGGCCTGACAACGGACCAGTATCGGAGGTGGGCGTGCACAGGCCGCCGCCGCCGCCGCAAGGCCGGCGCGCGAGTGGGGCTCTTCCACTCCACCTGCGAGTAGCTATAGCTAGGATCTGTTATCTCCGGGTCTTTTTCCCCTCGCTGTTCTTCGGCTGCTTTT | |||||||||
gi|36016937|gb|CA283353.1|CA283353 SCBGSD1053D10.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCBGSD1053D10 5', mRNA seque TCTCGCCGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GCGAACCGAAGGCTCCCGAGACCACCGCGATGTCCGCCATGGAGACCGACATCAACGCGCCGTCGCCGCCCGCCCCCGCCGGCGAGGGATCATCAGCGGCCGGTCCGTCCTCCTCCTCCCGCAAGCCCAACAAGCGCTTCGAGATCAAGAAGTGGAACGCCGTCGCGCTCTGGGCATGGGATATCGTCGTCGACAACTGCGCCATCTGCCGCAACCACATCATGGATCTATGCATCGAGTGCCAGGCGAACCAAGCCAGCGCGACTAGCGAGGAGTGCACTGTCGCTTGGGGTGTCTGTAATCATGCTTTTCACTTCCATTGCATCAGCAGGTGGCTTAAGACTCGCCAAGTGTGCCCATTAGACAACAGTGAGTGGGAGTTCCAGAAATACGGCCACTAGTTCCTGGGCACCCTCATGTGATGTTGGGGCTTGCTTCTGGCTACTGCTGCCACTCAAGTGTTTTTGTCTGCCAAACAGCTCCATCTTTTACTGCTCTGGATGCTTGCATGTATCACCGGTCAATTATCACTAGTAGTACGTCCACCTGGGACTCTATTTGGATGATTCGTTAAGAGGATAGTANGCCCATTTTATCAGTGTTATATGTGGAATTTCATAAGTGAGCTTGAATTGTGCTGTGGTACCATTTTCTAAAGTCTGGTGGGTTTTTTATCCGG | |||||||||