| mature miRNA: TCTCGCTGCTGAGCTCGGCGT species: Brachypodium distachyon database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|270470996|gb|GT852721.1|GT852721 CCYP9125.g1 CCYP Brachypodium distachyon leaf + leaf drought Brachypodium distachyon cDNA cl TCTCGCTGCTGAGCTCGGCGT EST sequence (targeted fragment marked with yellow): GCCTCTGCCTCCTCTGCATCCCGCGGATGTACAAGTACTACATACAGACAAAGGACTTGGCTGCCAAGCGGCTCGCAAAGCTGTGGGTTCTTACTATATTTCTGGCAACTCTTTGCTGGCTAGTTGATCGCATCTTCTGTAAGAAGCTTTCGCACTGGTACATCAACCCGCAGGGGCATGCATGGTGGCACGTGCTTATGGGGTTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGGGCTCAGCAGCGTGGGTGGGAGCCACGTATTACCCATCTTTTTGGGTTATTGCCTTATGTTAAGCTTCAGAAATCCAGAAAGAGGGAGTGAGTTCTTTGATGATCAATGGTGTTCTCCAGGACCTGAAATCAATGTCTGCCATGTGCGCAAAAACAAGCTGTGGCATTTTTGTATATGGGCTTCCATCTGATTTTGGACTACAAATGTTATGATGTCTCACTGGATTTTGGTAACTTTAACTGACGCCTGTTTTATACCATACTTAATCGCAAATCAGAGATTAGTTGGAGTGC | |||||||||
gi|270380738|gb|GT761927.1|GT761927 CCXF3382.b1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachyo TCTCGCTGCTGAGCTCGGCGT EST sequence (targeted fragment marked with yellow): CAACATGTTCTACAACAGAGCGATGAGACTCCAATGGTGTGGGAGATCCTGCTATATCTGTATGTCCTTTATTCACCGGACTGGCATTACAGGAGCACCATGCCTACTTTCCTTGTCTTCTATGGTGCCGCATTTGCTGCAGTTCATTTCTTCGTTCGATTCCAAGTAGTATTCAAGTTGCATTACATTGGCCTCTGCCTCCTCTGCATCCCGCGGATGTACAAGTACTACATACAGACAAAGGACTTGGCTGCCAAGCGGCTCGCAAAGCTGTGGGTTCTTACTATATTTCTGGCAACTCTTTGCTGGCTAGTTGATCGCATCTTCTGTAAGAAGCTTTCGCACTGGTACATCAACCCGCAGGGCATGCATGGTGGCACGTGCTTATGGGGTTTAACTCATACTTTGCAAACACATTCTTAATGTTTTGCCGGGCTCAGCAGCGTGGTGGAGCCACGTATTACCCATCTTTTGGTT | |||||||||
gi|78018505|gb|DV486892.1|DV486892 5520_E09_J18RZ_071 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clon TCTCGCTGCTGAGCTCGGCGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCACACTAGCAGCTAGCTACACTGACAGACGACATTCTCAGGTATTTTTAGAGAAGGGGGCAAACCATGGCGGCTTCTCGTACCTTGGCTGCACTCTTTGCCGTGGCAGTGCTCGTGCTTTGCTCTCGTGTTCTGGCCACCGATCCGACCCAGCTCCAGGACTTCTGCGTCGCCGATATGCACAGCCCTGTGCTGGTGAACGGGTTCGTGTGCAAGGACGCGATGATGGTGAGCGCCAACGACTTCTTCATGCCGGGGCTGAACGTGCCGGCCCCGCTGAACGCGCAGGGGTCCGCCGTGAAGGCAGTGACAGTGCTGGAGCTGCCGGGGCTCAACACGCTGGGGATCTCCCTCGTCCGGATCGACTACAAGCCGGGGGGCCAGAACGCGCCCCACATTCACCCCAGGGGCACCGAGGTCCTGACAGTGATCAAGGGGCAGCTCCTGGTGGGCTTCGTCACCACCAACGCCCCGCTCAAGAACAAGCTCTTCCAGAAGCAGCTTGTCGAGGGCGACGTCTTCGTGTTCCTCCAGGGGCTCATCCACTTCCAGCTCAACAACGGGGCCGTCCCGGCGGTCGCCTTCGCCGGCCTCAGCAGCCAGAATTTTGGTGTCACTACTATTGCTGACGCCGTGTTTGGGGCTAACCCGCCGATCACTGTGGATATCCTGGCAAAGGCGTTCATGATCGATGCTGAGCAGGTTGAGTGGATCCAGACTAAGTTCGCCACGCCGCCCGCTGCTGGAGGTGGTGGTGGCGGATACATGCCCGGGAACATGACCGGCGGCGGCGATGGC | |||||||||
gi|78019476|gb|DV487863.1|DV487863 5542_C01_E02RZ_011 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clon TCTCGCTGCTGAGCTCGGCGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCTCACACACTAGCAGCTAGCTACACTGACAGACGACATTCTCAGGTATTTTTAGAGAAGGGGGCAAACCATGGCGGCTTCTCGTACCTTGGCTGCACTCTTTGCCGTGGCAGTGCTCGTGCTTTGCTCTCGTGTTCTGGCCACCGATCCGACCCAGCTCCAGGACTTCTGCGTCGCCGATATGCACAGCCCTGTGCTGGTGAACGGGTTCGTGTGCAAGGACGCGATGATGGTGAGCGCCAACGACTTCTTCATGCCGGGGCTGAACGTGCCGGCCCCGCTGAACGCGCAGGGGTCCGCCGTGAAGGCAGTGACAGTGCTGGAGCTGCCGGGGCTCAACACGCTGGGGATCTCCCTCGTCCGGATCGACTACAAGCCGGGGGGCCAGAACGCGCCCCACATTCACCCCAGGGGCACCGAGGTCCTGACAGTGATCAAGGGGCAGCTCCTGGTGGGCTTCGTCACCACCAACGCCCCGCTCAAGAACAAGCTCTTCCAGAAGCAGCTTGTCGAGGGCGACGTCTTCGTGTTCCCCCAGGGGCTCATCCACTTCCAGCTCAACAACGGGGCCGTCCCGGCGGTCGCCTTCGCCGGCCTCAGCAGCCAGAATTTTGGTGTCACTACTATTGC | |||||||||
gi|78019961|gb|DV488348.1|DV488348 5537_G04_M07RZ_020 Brachypodium distachyon root EST library Brachypodium distachyon cDNA clon TCTCGCTGCTGAGCTCGGCGT EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGCATATCATCCCTTCACAAACACACACTTGAAATCAATCACATTTCACCACAGATCTCCATCAAACCCGAAACCAACAAACAACAATGTCGCTGGTGAGGCGCGGCAGCGTGTTCGACCCATTCTCCCAGGACCTCTGGGACCCGATCGACAGCATCTTCCGCTCCATCGTCCCGGCAGCCGCGGCCTCCTCCGACTTCGACACTGCGGCCTTCGTCAACGCCCGCATGGACTGGAAGGAGACTCCCGAAGCTCACGTGTTCAAGGCGGACCTTCCCGGAGTGAAGAAGGAGGAGGTGAAGGTGGAGGTGGAAGACNGCAACGTGCTGGTGGTGAGCGGCGAGCGCAGCAGGGAGAAGGAGGACAAGAACGACAAGTGGCACCGCGTCGAGCGCAGCAGCGGCAAGTTCGTCAGGCGCTTCCGTTTGCCGGAGAACGCTAAGGTGGAGCAGGTCAAGGCTGGGCTGGAGAACGGCGTGCTCACGGTCACCGTGCCCAAGTCTGAGGTCAAGAAGCCAGAGGTGAAGGCCATCGAGATCTCTGGTTAATTGCCTGATCGTGGAGACTGGAGAAGCATCGTGATCGTATCGAGTGTGCTTGTGTCAGCTGTGCTCCTTG | |||||||||
gi|270394458|gb|GT773717.1|GT773717 CCXF10244.g1 CCXF Brachypodium distachyon abiotic + biotic stress pool Brachypodium distachy TCTCGCTGCTGAGCTCGGCGT EST sequence (targeted fragment marked with yellow): TCACCACAAATCTCCATCAAACCCGAAACCAACAAACAACAATGTCGCTGGTGAGGCGCGGCAGCGTGTTCGACCCATTCTCCCAGGACCTCTGGGACCCGATCGACAGCATCTTCCGCTCCATCGTCCCGGCAGCCGCGGCCTCCTCCGACTTCGACACTGCGGCCTTCGTCAACGCCCGCATGGACTGGAAGGAGACTCCCGAAGCTCACGTGTTCAAGGCGGACCTTCCCGGAGTGAAGAAGGAGGAGGTGAAGGTGGAGGTGGAAGACGGCAACGTGCTGGTGGTGAGCGGCGAGCGCAGCAGGGAGAAGGAGGACAAGAACGACAAGTGGCACCGCGTCGAGCGCAGCAGCGGCAAGTTCGTCAGGCGCTTCCGTTTGCCGGAGAACGCTAAGGTGGAGCAGGTCAAGGCTGGGCTGGAGAACGGCGTGCTCACGGTCCCCGTGCCCAAGTTTGAGGTCAAGAAGCCAGAGGTGAAGGCCATCGAGATCTCTGGTTAATTGCCTGATCGTGGAGACTGGAGAAGCATCGTGATCGTATCGAGTGTGCTTGTGTCAGCTGTGCTCCTTGATGTGGTTCCTTTGATGTTTTTGGTGTGTCTGTCTGTGTGTGCTGGCATCTTGCTTTGTAGTCACATTGTGTGATGTGTGTACTTTGTTTGCTTCGTGAGAAATAATGAATAAATAAAATTTCG | |||||||||