| mature miRNA: TCTCGCTGGCGCGCGCGTGCG species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|36048621|gb|CA291609.1|CA291609 SCQGFL8014B11.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCQGFL8014B11 5', mRNA seque TCTCGCTGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GCGAGACCAAGAACTGAGCCGCGCGCGCGCACAGCGACCAGATGGTCCGTCCTCGCTCGTCCGTGCTTCTTGGAGCGGTCGCGGTGGCNCTAGTCCTTGCCGCTGCGCCGTCGGCGCTCGCCGGCGACCCCGACTACCTCCAGGACCTCTGCGTCGCCGACCTCAACTCCGAGGTGAAGGTGAACGGGTTCCCGTGCAAGGCGAACGCCACCGCCGACGACTTCTTCTCGAGCATCCTGGCGAGGCCGGGCGCCACCAACACCACGTCCGGCTCCGTCGTCACGGGCGCCAACGTGGAGAAGGTGCCGGGGCTGAACACGCTGGGCGTCTCGCTCTCCCGCATCGACTACGCGCCGGGCGGGCTCAACCCGCCGCACACGCACCCGCGCGCCACCGAGCTCGTCTTCGTGCTCTACGGCACGCTCGACGTCGGCTTCGTCACCACCGCCAACAAGCTCGTCTCCAAGACCATCGCGCAGGGCGACGTCTTCGCCTTCCCGCGGGGGCTCGTGCACTTCCAGAGGAACACCGGCGCCGAGCCCGCCGCCGTTATCTCCGCATTCAACAGCCAGCTCCCCGGCACGCAGTCCATCGCCATGACGCTCTTCGGGGCCTCGCCTGAGCTGGCCGACGAAGTGCTCGCCAAGGGCTTCCAGATCCCCGACGAGGAGGTGGACAAGATCAAGGGCCAGTTCGCGCCAAAGAAGGGCTGAATTATATGAAGATCCCGGAAAAATTT | |||||||||
gi|36020275|gb|CA284019.1|CA284019 SCMCSD1062B11.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCMCSD1062B11 5', mRNA seque TCTCGCTGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CTTAACCCGCGAGCTGAGGAGGAGCAGGACGGCGCCCCACCCCCACAGAATTTCTCTCTCGTCCACCACCACCACCAGCTGAGCTCATCAGGTCGGCGTGGTCGGAGAAGAAGAACCTGCGTCTCGTCGCTAGCTGCCGCGAGGAGACGAGCGAGTGAGACAGGTGCGCGTGCGCCGGCGAGGATCGGATACTTGGATTGGATTGGATCCACCTGTCGTCGTCGATGGGGATCCACCTGCTGGCGTTCGTGGCGGCGAGGGGCTTCCTGCAGGTGTTCCAGGTGTCGGCGCCGCTGCTGTGGCCGCTCAACCTCTGGCTGCCGCTCGCGCGCCACCTGCCCGAGGCCTGCGCCGCCTTCTACGACGCCCTCGTCTCGCACGCGGGCCGCCTGCGCGCCACCGTCCGGCGCCACCGACGCGACGGCGGCAGCCGGAGCGCCCTCGACGAGTACCTCCGCAACGCCACGATGCTAACGCTCTCCGACTGAAGGAAGAGACTGAGCCGAGCGGCCTGACAACGGACCAGTATCGGAGGTGGGCGTGCACAGGCCGCCGCCGCCGCCGCAAGGCCGGCGCGCGAGTGGGGCTCTTCCACTCCACCTGCGAGTAGCTATAGCTAGGATCTGTTATCTCCGGGTCTTTTTCCCCTCGCTGTTCTTCGGCTGCTTTT | |||||||||
gi|36061453|gb|CA295985.1|CA295985 SCAGLV1039H06.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCAGLV1039H06 5', mRNA seque TCTCGCTGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): TTAAGCAAGCAGCAGGTCGTCCACTCACTGACCGGTCATGGCGAGGATCCACCTCTACGTCGCCGCGGCCTGCGCCGCGGTCCTCGCGCTCGCCGCCCCGGCCCTCGCCGGCGACCCCGACATGCTCCAGGACGTCTGCGTCGCTGACTACGCCTCCCCGGTCAAGCTGAATGGGTTCCCGTGCAAGGCGAACATCTCGGCGGACGACTTCTTCTTCGACGGGCTGAGGAACCCCGGCAACACCAGCAACGCAGCGGGCTCCCTGGTGACGGCGGCCAACGTGGAGAAGTTCCCGGGCGTGAACACGCTGGGCGTCTCCATCGCACGCATCGACTACGCCCCGGGCGGCCAGAACCCGCCGCACACGCACCCGCGCGCCACCGAGATCATCTTCGTCCTCGAGGGCACGCTCGAGGTCGGCTTCATCACCACCGCCAACAAGCTCTTCACCAAGACCCTCACCAAGGGGGACGTCTTCGTCTTCCCGCGCGGCCTCGTCCACTTCCAGCAGAATAGGGGGTACGGCCCCGCCGCCGTGGTCGCCGCCTTCAACAGCCAGCTCCAGGGCACGCAGCANATCGCCATGACGCTCTTCGGNGCCACGCCGTCCGTGCCCACCGACATCCTCGCCAAGGCCTTCCGGATCGGCAACGGGGAGGTGGAGCACATCAAGGGCAACTTCGCGCCCAAGTAGAAGAGCAGGCAGCGTCTTCGTCCAATATATGTCT | |||||||||
gi|36003876|gb|CA278977.1|CA278977 SCBFRT3092F04.g RT3 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBFRT3092F04 5', mRNA seq TCTCGCTGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): ATTCCCGGTCGACCACGCGTCCGGATTAAACAAGCAGCAGGTCGTCCACTCACTGACCGGTCATGGCGAGGATCCACCTCTACGTCGCCGCGGCCTGTGCCGCGGTCCTCGCGCTCGCCGCCCCGGCCCTCGCCGGCGACCCCGACATGCTCCAGGACGTCTGCGTCGCTGACTACGCCTCCCCCGGTTATATATGTAGCGACTTGCCGCTGACCCATGCGTGCGTGCACCGTGCAGCGGTCAAGCTGAATGGGTTCCCGTGCAAGGCGAACATCTCGGCGGACGACTTCTTCTTCGACGGGCTGAGGAACCCCGGCAACACCAACAACGCGGCGGGCTCCCTGGTGACGGCGGCCAACGTGGAGAAGTTCCCGGGCGTCAACACGCTGGGCGTCTCCATCGCACGCATCGACTACGCGCCGGGCGGACAGAACCCGNCGNACACGCACCCGCGCGCCACCGAGATCATCTTCGTCCTCGAGGGCACGCTCGAGGTCGGCTTCATCACCACCGCTAACAAGCTCTTCACCAAGATCCCTCACCAGGGGGACGTCTTCGTCTTCCCGCGCGGCCTCGTCCATTTACAGCAGAACAGGGGGTACGGACCCGACGNCGTCGTCGCCGGCTTAACAGCCAGCTCCAGGGCACGCAGCANATCGCCATGACGCTCTTCGCGCCACGCCGGCCGTGCCACCGAATCCTCGCCAGGCTTCCAGATCGCAACGGG | |||||||||
gi|36074746|gb|CA300504.1|CA300504 SCSFLV1045A08.g LV1 Saccharum hybrid cultivar (mixed) cDNA clone SCSFLV1045A08 5', mRNA seque TCTCGCTGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CCCAGAGTTCTAGCGAGACAAGCTGAAAGAAAGCTGAGTTCACACGCAGGCCGAAAGAAAGCCAAGATGCGGAGCCCAAAAGGACGAGGCGTCGGCGTCGGCGGCCAGGAGCACGTCGACCTGATCCCGGGCATCCCCGACGACGTGGCGGTGGACTGTCTGGCGCGCGTCCCGCACGCCTCCCACCGCGCCATGCGCCGGGTCTGCCGTGGCTGGCGGAGCGCCGCCGCAACCCCGGCCTTCGCCTCCGCGCGCGCGCAGGCGGGCGCCAACGAGGACCTCGTCTACCTCATGCAGTTCGGCAACCCGTCTGCCGCCGACGACGGGCCCAAGGACGACGATGGCCCCGCCAACACGCCGGCGTACGGCGTCGCGGTGTACAACGTGACAACCGGCGAGTGGCGCCGTGAGCGCGGCGCGCCGCCCGTGGTGCCCGTGTTCGCGCAGTGCGCGGCGGTGGGGACGCGCCTGGCCGTCCTCGGCGGCTGGGACCCGCGCACCTTCGAGCCCGTCGCCGACGTCCACGTCCTGGACGCCGCCACGGGCCGGTGGCGCCGCGGCGCGCCGATGCGGTCGGCGCGGNCCTTTTTCGCGTGCGCCGAGGCGGGCGGGAGGATCTACGTGGTCC | |||||||||
gi|36013034|gb|CA282116.1|CA282116 SCAGSD2040H06.g SD2 Saccharum hybrid cultivar (mixed) cDNA clone SCAGSD2040H06 5', mRNA seque TCTCGCTGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): CCAGCGTGCAGATTAAGCAAGCAGCAGGTCGTCCACTCACTGACCGGGCATGGCGAGGATCCACCTCTACGTCGCCGCGGCCTGCGCCGCGGTCCTCGCGCTCGCCGCCCCGGCCCTGGCCGGCGACCCCGACATGCTACAGGACGTCTGCGTCGCTGACTACGCCTCCCCGGTCAAGCTGAATGGGTTCCCGTGCAAGGCGAACATCTCGGCGGACGACTTCTTCTTCGACGGGCTGAGGAACCCCGGCAACACCAGCAACGCGGCGGGCTCCTTGGTGACAGCGGCCAACGTGGAGAATTTCCCGGGCGTGAACACGCTGGGCATCTCCATCGCACGCATCGACTACGCCCCGGGTGGCCAGAACCCGCCGCACACGCACCCGCGCGCCACCGAGATCATCTTCGTCCTCGAGGGCACGCTCGAGGTCGGCTTCATCACCACCGCTAACAAGCTCTTCACCAAGATCCTCACCAAGGGGGACGTCTTCGTTTTCCCGCGCGGCCTCGTCCACTTCCAGCAGAATAGGGGGTACTGCCCCGCCGCCGTCATCGCCGCCTTCAACAGCCAGCTCCAGGGCACGCAGCAAATCGCCATGACGCTCTTCGGCGCCACGCCGNCCGTGCCCACCGACATC | |||||||||
gi|36026122|gb|CA285569.1|CA285569 SCEQSD1078G01.g SD1 Saccharum hybrid cultivar (mixed) cDNA clone SCEQSD1078G01 5', mRNA seque TCTCGCTGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): GTGGTTCCTTCCAGAGCTCCTCCAGTCTTGGCCGACTGATTAAGCAAGCAGCAGGTCGTCCACTCACTGACCGGTCATGGCGAGGATCCACCTCTACGTCGCCGCGGCCTGTGCCGCGGTCCTCGCGCTCGCCGCCCCGGCCCTCGCCGGCGACCCCGACATGCTCCAGGACGTCTGCGTCGCTGACTACGCCTCCCCGGTCAAGCTGAATGGGTTCCCATGCAAGGCGAACATCTCGGCGGACGACTTCTTCTTCGACGGGCTGAGGAACCCCGGCAACACCAGCAACGCAGCGGGCTCCCTGGTGACGGCGGCCAACGTGGAGAATTTCCCGGGCGTCAACACGCTGGGTGTCTCCATCGCGCGCATCGACTACGCCCCGGGCGGGCAGAACCCGCCGCACACGCACCCGCGCGCCACCGAGATCATCTTCGTCCTCGAGGGCACGCTCGAGGTCGGCTTCATCACCACCGCTAACAAGCTCTTCACCAAGATCCTCACCAAGGGGGACGTCTTCGTCTTCCCGCGCGGCCTCGTCCACTTNCAGCAGAATAGGGGGTACGGCCCCGCCGCCGTCGTCGCCGCCTTCAACAGCCAGCTCCAGGGCACGCAGCAAATCGCCATGACGCTCTTCGGCGCCACGCCGCCCGTGCCCACCGACATTCTCGCCAAGGCCTTCCAGATCGGGAACGGGGGAGGTGGAACACATCAAGGGAAACTT | |||||||||
gi|166792658|gb|DV732917.1|DV732917 SUS01-126-H06-A-058.b Sugarcane mature stem library Saccharum hybrid cultivar CoS 767 cDNA c TCTCGCTGGCGCGCGCGTGCG EST sequence (targeted fragment marked with yellow): ACAGCGAACTCTGCGCTTCCACTTCTCTCTCCACCGCTCTCTCGCCCAACCAACCCCGGCAGCAGCAGGAGGTGGAGCACGGGCATGGTGATCGGACTCCCCTTGCCTGCCTCCTGATCTCAACCTCTTTCTACCAGCGCGGGCTCAAGCCGGGATGGGGTATCTGCCGGCGCTGGGCGGGAAGGCGGCGCACCTGGTGTCCGACCTCGCCACCGTCATCCTCAACCCCGTCTCCGAGCGCGAGCGCCAGCGACACCACCCCTCCCACCTCCCGGAGATTACTGAAGGAAAAGAGACACTATTCGGTGATGATGATTCTGACCAAAATTCTGAGACTCCTGATGGTCCTGACACATCTTCCTTCAGAGCATTTCTGATGTCCTTTGTGCCTTCCTCAACTGCCAGCAA | |||||||||