| mature miRNA: TCTGCAACGTGAACAGTGGA species: Populus trichocarpa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|52493666|gb|CV240691.1|CV240691 WS02510.B21_B06 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02510_B06 3', mRNA sequence TCTGCAACGTGAACAGTGGA EST sequence (targeted fragment marked with yellow): AAGAAGTCCATTTGAGGATAGATTGTTCACATTGCAGATATGGGATACTGCAGGACAAGAGAGGTTTCAAAGTCTTGGAGTGGCTTTCTACCGTGGTGCAGACTGTTGTGTTCTTGTGCATGATGTGAATGTCATGAAGTCATTTGAGAATCTTAATAATTGGCGAGAAGAGTTTCTGATTCAGGCTAGCCCATCCGACCCTGAAAACTTCCCATTTGTTGTGTTGGGGAACAAGATAGATGTTGATGGAGGCAATAGTCGAGTGGTTTCTGAGAAGAAAGCGAAGGCATGGTGCGCTGCTAAGGGAAACATACCTTACTTTGAGACTTCCGCAAAAGAAGGCTTCAATGTGGACGCTGCATTTCAGTGCATAGCCAAAAATGCGCTTAAGAATGAACCTGAAGAAGAAATATACCTTCCTGACACCATTGATGTTGCGGGTGGAGGGCGACAACAAACGTCCACCGGGTGCGAATGTTGAAAGAACTTCCAGACCAGCTCTGTTTATTTCCATTAGCAACACAAGTTTCATCACTACGTTATCATTCGGTCAGGTCATTAAAAATATTATCTTTGCATCGTAAAAGTGGCTCTCAAAGCATAATTGTATTTCGTCGTGACGTGTCCTTGTATTTGTATTCAATCTTGTAATCACAATCCATTTGGATTCCTATACACCATATCATCTGCACTTAGTACAAGAACTCTGCTCCCTCGATGAAAAAAAAAAAAAAAAAA | |||||||||
gi|73889343|gb|DT492081.1|DT492081 WS02549.C21_J20 PT-MB-N-A-15 Populus trichocarpa cDNA clone WS02549_J20 3', mRNA sequence TCTGCAACGTGAACAGTGGA EST sequence (targeted fragment marked with yellow): GTCTCTCCCCTAAAAACAAACCATAATTTTCTGAACTAAAAAAAGAAAAAGAAAAACAGAATTGCCTTCTCAAAAAAAGTTCCTTGAAGAATCAATGGCTACTCGTAGACGCATGCTCTTGAAGGTTATAATTCTCGGTGACAGCGGGGTAGGCAAGACATCACTAATGAATCAGTATGTGAATCGAAAGTTCAGTAATCAATACAAGGCGACGATAGGAGCTGACTTCTTAACCAAAGAAGTCCATTTTGAGGATAGATTGTTCACATTGCAGATATGGGATACTGCAGGACAAGAGAGGTTTCAAAGTCTTGGAGTGGCTTTCTACCGTGGTGCAGACTGTTGTGTTCTTGTGCATGATGTGAATGTCATGAAGTCATTTGAGAATCTTAATAATTGGCGAGAAGAGTTTCTGATTCAGGCTAGCCCATCCGACCCTAAAAACAAACCATAATTTTCTGAACTAAAAAAAAAAAAAAAAAA | |||||||||