| mature miRNA: TCTGCAATCCCAGCACTTTGG species: Artemisia annua database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|159735699|gb|EY072921.1|EY072921 CAZI10459.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI10 TCTGCAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): CAAGGAAGAAGATGTTAAGTTGGGAGCAAACAAGTACTCAGAGAGGCAACCAATTGGTACCTCAGCTCAAACTGACAAAGACTACAAAGAGCCACCACCAGCTCCTTTGTTTGAGCCAGGTGAGTTGTCATCATGGTCTTTCTACAGAGCTGGTATTGCAGAGTTCATAGCCACTTTCTTGTTCTTGTACATCTCTGTGTTGACTGTTATGGGTGTGGTTAAGTCTCCCACAAAGTGTGGTACTGTTGGTATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTTGCACTTGTCTACTGTACTGCTGGTATCTCAGGAGGACACATCAACCCAGCAGTGACCTTTGGTTTGCTACTGGCTAGAAAACTATCCCTAACAAGGGCCATATTCTACATGGTTATGCAGTGTCTTGGAGCCATCTGTGGTGCAGGTGTGGTCAAAGGGTTCCAAGGTAAACACGAATTCACCACTCTGGGTGGTGGAGCCAATGTTGTAGCCCATGGTTACACCAAGGGAGATGGTCTTGGTGCTGAGATTGTTGGGACCTTTGTGCTTGTCTACACTGTTTTCTCTGCCACTGATGCCAAAAGAAGTGCCAGAGACTCACATGTTCCTATTTTGGCTCCTCTCCCCATCGGGTTCGCGGTTATCTTGGTTCATTTGGCCACCATCCCAATCACCGGAACTGGTATCAACCCTGCA | |||||||||
gi|159628480|gb|EY057539.1|EY057539 CATF10604.fwd CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD TCTGCAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): ACACACAAACTCCACTAACATTCTAAAAAAAAGCTAGTGAGGTCACAAATAAGCAAAAAAACAATGGAGGGCGAGGAAGAAGATGTTAAGTTGGGAGCAAACAAGTACTCAGAGAGGCAACCAATTGGTACCTCAGCTCAAGCTGACAAAGACTACAAAGAGCCACCACCAGCTCCTTTGTTTGAGCCAGGTGAGTTGTCATCATGGTCTTTCTACAGAGCTGGTATTGCAGAGTTCATAGCCACCTTCTTGTTCTTGTACATCTCTGTGTTGACTGTTATGGGTGTGGTTAAGTCTCCTACAAAGTGTGGTACTGTTGGTATTCAAGGGATTGCTTGGGCTTTTGGTGGTATGATCTTTGCACTTGTCTACTGTACTGCTGGTATCTCAGGAGGACACATCAACCCAGCAGTGACCTTTGGTTTGCTACTGGCTAGAAAACTATCCCTAACAAGGGCACTATTCTACATGGTTATGCAGTGTCTTGGTGCTGAGATTGTTGGGACCTTTGTGCTTGTCTACACTGTTTTCTCTGCCACTGATGCCAAAAGAAGTGCCAGAGACTCGCATGTTCCTATTTTGGCTCCTCTCCCCATCGGGTTCGCGGTTTTCTTGGTTCATTTGGCCACCATCCCAATCACCGGAACTGGTATCAACCCTGCAAGAAGTCTTGGAGCCGCGATTATCTACAAC | |||||||||
gi|159695319|gb|EY092328.1|EY092328 CAZI20672.fwd CAZI Artemisia annua normalized leaf library Artemisia annua cDNA clone CAZI20 TCTGCAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): GTTTTAAAAACAAAAAACAAAAAAAACATTGATAACCAGCTGACTGTCTTTTTGTGTGTGATCTAAGCAAGATTATCGAATACTTACTAAAAATGGAAAATGGTCATGCAAATGGGGTGGCAAAGGAGTTGTGCATTAAGGATCCATTAAACTGGGGTGTAGCAGCTGAGGCTTTGACAGGGAGTCATTTAGATGAGGTTAAGAAGATGGTTGCTGAGTTTAGGAAACCTGTTGTGAAACTAGGTGGTGAAACACTGACAGTTTCCCAGGTTGCTGGGATTGCGGCTAGTGAAAACACTGGTGTAAAGGTTGAGTTGTCTGAAAGTGCTAGAGCTGGAGTTAAAGCTAGTAGTGATTGGGTTATGGAGAGTATGGGGAAAGGGACTGATAGTTATGGTGTTACTACTGGTTTTGGCGCTACTTCTCACAGGAGAACCAAGAATGGTGGTGCTCTTCAGAAGGAACTCATTAGATTTTTGAACGCCGGGATCTTTGGCAATGGCACTGAATCGAACCACACCCTTCCACATTCAGCCACAAGAGCCGCAATGCTCGTAAGAATCAACACGTTGCTCCAGGGCTACTCTGGCATTCGTTTCGAGATCTTGGAAGCAATCACCAAGTTTCTTAACACTAATGTCACCCCTTGTTTGCCTCTTCGTGGTACCATCACCGCATCTGGTGATCTTGTCCCATTGTCCTACATTGCTGGACTTCTCACTGGTCGACCCAAC | |||||||||
gi|159712246|gb|EY054594.1|EY054594 CATC4970.fwd CATC Artemisia annua, Tanzanian, from Sandeman Seeds, 0.5-1kb Artemisia annua c TCTGCAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): TACAATGGCGCGATCTCAGCTTACTGCAACCTCCGCCTCCTGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGCGATTACAGGCACGTGCCATCGTGCCTGGCTATTTTTGTATTTTTAGTAGACGTGGGGTTTCACCATGTTGGTCAGGCTAGTCTCAAACTCCTGACCTTGTGATCTACCCATCTCAGCCTCCCAAAGTGCTGGGATTGCAGACATGAGCCACTGCGTCCAGCCTGGTCTACTTTTAATATTGTTTTATTACTCGTATTTAAAGGAGTATTTTTCCTCCTCCGCCAATACACTGACTTATGTGAGTAGTCAACTCTTCTGAGCCATGCAACCCCGCTGTTTAAATGACTCGCGGCTTTGTCACTCCCAAATCCTACAGTAAAATGTATCTGGTGGAGAAATGAACAGACTTGTCTCCTTAAATGAGTGTGGAGAACAGAATGAGTTAAAGGAAAACAAAGCAATAAAGCATTCATGTATTTAAAAGATCTGGCCGAATAGTTTGCTAACCTAAAGAAAATGATTCAGAGGCTGGGCATGGGGGCTCATGCCTGTAATCCCAGCACTTNGGAGGCTGAGGTGGGAGGATTTCTTGAGCCCAGGATTTCAACACCAGCCTGGGCCACATAGTGAGACCTCATCTGTACAAAAAACAAAAATAAAAAAC | |||||||||
gi|283961687|gb|GW329414.1|GW329414 AAFB_UP_019_B03_06DEC2005_029 AAFB Artemisia annua cDNA, mRNA sequence TCTGCAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): GTAAGGAAGAAGATGTTAAGTTGGGAGCAAACAAGTACTCAGAGAGGCAACCAATTGGTACCTCAGCTCAAACTGACAAAGACTACAAAGAGCCACCACCAGCTCCTTTGTTTGAGCCTGGTGAGTTGTCATCATGGTCTTTCTACAGAGCTGGTATTGCAGAGTTCATAGCCACTTTCTTGTTCTTGTACATCTCTGTGTTGACTGTTATGGGTGGTGGTTAAGTC | |||||||||
gi|159717619|gb|EY057684.1|EY057684 CATF10680.rev CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cD TCTGCAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): TCCTAAAGTGCTGGGATTGCAGGGGTGAGCCACGGCACCCAGCCAAAAAACCAGATTTTATAACTCAGACATGACTCCTTTCCCTCTCCAATTTATTAGACTGTCAGGTGTCTGGCAGCAGGAACGGAAGTGGGCTTACTGGGGCCAATTCACATCATGGAAAACTTCATGAGAATCTTCATTAGACATCAAACCCCTGGTGAATCTGTGTGGCTCTAGAAAGCCTTTTGTGGAAGAAGAACTAGTCTTCATAAGCTTGTTTTGAGTACATTTCACTCAAGTTAACTTTTGTCAAATCAGTAAAGATGATGGGCACATGGACGGGACAGTATTCTGAAAAATCAGGGAGCATCAGAGAGGCTTAGAGCTTTTAATAGAAAGAACATCAGCAGTCTTTTGGGGGAAATTACTTCATTTTCAAAAAAAAAAAAAAAAAAGCAAATTAGGCCACTCAGAGGAGGCCAAACTCCGTGCTGCTCCCAATATTTTGTGATGCAGTTCTGTGCCTTGGTTTAAGGAGGATCTGAAAGAATGCTATAGTGGCTAAATGAGACACAAGGTCTTAGTTGACTCTTAAAATTAATTTCTAATATTAGATGCAGGATTGACTTTAACTACAGGTTGTCATCACCCATTAAATTTATTAAAGTGCAAAAACAATAAGAAACAAGAACAACAAAAACAAAAGATAAAGGC | |||||||||
gi|159758978|gb|EY066537.1|EY066537 CATF9389.rev CATF Artemisia annua, Tanzanian, from Sandeman Seeds, 1-2kb Artemisia annua cDN TCTGCAATCCCAGCACTTTGG EST sequence (targeted fragment marked with yellow): ACTAACAATTCATTCACTTGTGTTTGTGTCAGTGTAACTCTTGGAAATGGGCAGTCTAACGGTGGAAAATGTGCATCAAAACGGTGTGGTAGTCGGTTTAGGTGTGAAAGGTGACCCATTAAACTGGGGCGCAGCAGCTGAAAGTTTGACAGGGAGTCATTTAGATGAGGTTAAGAAGATGGTTGCTGAGTTTAGGAAACCTGTTGTGAAACTAGGTGGTGAAACACTGACAGTGTCCCAAGTTGCTGGGATTGCGGCTAGTGAAAACGCTGGTGTTAAGGTTGAGTTGTCTGAAAGTGCTAGAGCTGGAGTTAAAGCTAGCAGTGATTGGGTTATGGAGAGTATGGGTAAAGGGACTGATAGCTATGGTGTTACTACTGGTTTTGGTGCTACTTCTCCCAGGAGAACCAAGAATGGTGGGGCTCTTCAGAAGGAACTCATTAGGTACTGTACTTTTTACGTTTATGTTAGTATTTAAGTTTGTCCCAAAATATATAGTTCTTCAAAGTTCAAACAACTGTTCAAAAATTTATGAAAAAGTAAGAAGGGATATTTGGAGGTAAAAAATTTAATAATTGTAAGAATTGCATGATTTTGTTTAGATTACTAATCTGATTTTCGTATGTTTATAAAAGTCAACTTCACGCAATCATCACACGCTTGTGACTTGTCTATAGGTGT | |||||||||