| mature miRNA: TCTGCATTTGCACCTGCACC species: Centaurea solstitialis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|124661531|gb|EH756273.1|EH756273 CNSL1530.b1_D24.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL1530, TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): AGGGTATTCAAGGGATGATTTGGTGATTAGTGCGGGTGCGAATGCGGGTGCTCTTTTAGTTGATGGACTTGGAGATGGTATCTTATTAGAAGCTCCAGATCAAGATTTTGAATTTCTGAGGAATACATCTTTCAATCTACTACAAGGATGCAGGATGAGGAACACTAAAACGGAATATGTGTCATGCCCATCTTGTGGTAGAACTCTATTTGATCTTCAAGTGATAAGTGCAGAAATTAGAGAAAAAACATCACATTTGCCTGGTGTTTCGATTGCAATTATGGGTTGCATAGTTAACGGACCAGGAGAGATGGCTGATGCAGACTTTGGATATGTTGGTGGTGCTCCTGGAAAGATCGATCTTTATGTTGGAAAGACGGTGGTAAAACGAGCAATTGCGATGGAGAATGCAACGGAAGCTTTGATTCAACTAATTAAAGACCATGGACGGTGGGTGGATCCTCCTGTTGAAGAGTAGAAGTAGGAGGAAATGAATATGATATAGTGAGTTCATTCACAATACAAACTTACAAACATTGGTTGATGGAAAAACATTAAGGTAACAATATTGTTGTTGTTGGTATTATTTGGAAAATGTTGTTACATAATGGATAATGTTTTAATAGTGTTATT | |||||||||
gi|124667504|gb|EH762244.1|EH762244 CNSL8243.b1_F21.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL8243, TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): CGGGGTTTGACTCGGGAAGGTGGCGTATGTGATGATACTGGTGACCAAGGCGGTTTGTTGGCAGATTTTCTCTATTGGAACACTCGGGTTGATCTTTAAGGTTTCGTGTCTGTTTTCTAATGTTGTTAGTACGGTCGGGTTGCCTATTGTTCCAATTCTAGCGGTCGTTCTCTTCCATGAGGAGATGAGTGGAGTGAAGATGGTTTCTATGGTGATGGCGATTTGGGGGTTCCTATCGTATATGTATCAGCATTATCTTGATAACACAAAAGGCTGAATCCCAAAATAAAGATGGATAAAGTTCCAAAGGCAAGATTTTGTGTCTAAATGCATTACTGCTGATGGTAACATATAATATGGTACAAGAGCAAATGCAGGTTTGATAGAATATCCGTTAATATAACGGTTTCATATGCTATATATCATACTATAAGAACACCACAAAGTTACCAGCCAAAAGAAATGGTTAAACAGCTTTGATATATAGAGCCTTAGACCATCAACTGCTACTTGTTGCTTTGTAGTGGAATTCATCGATTGTTGAGTATATCATACCTTCATCTTCAAGTGTTCTTATGGATTCCCTGCCATATAAAGAATTTCCCATGTTAAGCATTCAATAGTGTGTGTGTGTTGTGTGTGTTGTGTGTATATGTATGTATGTATATAGAGAGAGGACGAGTACATGATTTTGTCATGAGAAAGTTTCAGCTTCTGTGCCAATTCATCTGTATGGATGCCCTTTTCGTTATCACTGCAAATACAAACCATGTTAAAATGATCAAATT | |||||||||
gi|124660522|gb|EH755266.1|EH755266 CNSL14376.b1_P17.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL14376 TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): AAAAACAAATTTTAAAAATCGCCCAGGAACTACGAGATTGCCTGCGCCTGGTACCCAGCAGGAGCTGTGTCCGTCTATTATGACTCAGTGTTATTTGATGAAGGAAAGCAAGCATGAAGCTGCTGGGGCGTGTGCTAATGCAGAACATTCGTACAAGAAAACAAATACCAAGGAGTGCATAGCTTGCCTAGAGCAGGCACTAACTTTGTTCATGGAAGTTGGGAGGCTCAACATGTCTGCAAGATATTGCAAGGAAATTGCTGAGTTATATGAACAGGAACAGAACTTGCAGCAGGCCATTGCTTATTATGATAGAGCGGCTGATCTTTTTCAAGGGGAAGAAGTAACAACTTCTGCAAAACCAGGCAAGCAGAAAATTGCACCATTTTCAGCTCAGCTGGAACAATATCAGAAAGCGATTGAGATATATGAAGCTGTAGCACGACAATCTATCAACAATAACTTGCTAAAAA | |||||||||
gi|124678486|gb|EH773226.1|EH773226 CNSM5682.b1_D06.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM5682, TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): TTTCTTGGTAGGAGAAGGAACCGCTGCTCCTCAACTGGACGGAGCTCGCAGTAACTGCGGTGCAGGCCTAGATATCGGGGATTCTTTTACACTATGACATCCGGACAAGATTGCTGCAGGTGCAAATGCATGTGGCGCTGCTTATAGCTACTCGAGAATAAAGGAAGATGTTCAGTTGTTGAGGAAAATGGGCGTGAACTCTTTCAGATTCTCTATTTCATGGTCAAGAATATTACCAGGTGGGAAAGTGAACATGGGTAAAAATCAGGAAGGCATCAATTACTACAATAAATTGATTGACGAGTTACTATCCAATGGCATCGAGCCATTTGTCACAATTTTTCACTGGGATCTTCCTAATGCCTTGGAAGAAGAATACAAGGGTTTTCTAAGTTCAAAGATTGTGTCCGATTTTGTCAATTATGCTGATATTTGCTTTTGGGAGTTTGGGGATCGGGTAAAGAATTGGTTGACAGTAAACGAGCCACGTATGTTCATACATTACGGGTACGTAACAGGTACATGTGCACCTGGTCGAGGTGAAAAAGGGAAAGATAACGACCTTGAAACAGAGCCATATACCGTCGCATATAACCTACTCAATTGTCATGCAGCTGTTTATAGAAAGTATGAGAAAGATTATAAGGGTTTTCAAATGGGTAAAGTGGGAATCACCCTACATCTT | |||||||||
gi|124679702|gb|EH774442.1|EH774442 CNSM6792.b1_O18.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSM6792, TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): TTGATGTGGGCAATCGTCGATGGACTGCTATTAACGACAGGCTGCAAAGATGACGAATGTATGCTACATCAACCTTCGCGGTTTTCACCTTAAAGCAAAACCAATTCGCCTTCCGAAACGAAAAAAATTTGATGTCGACCTTTTCAAAACCTTCTCAACATGCGCTTCACCACACTGTAAAACCCCATTGACCTCGCTAGTTTACCGCCCCCAACCGTTGACTTTGACTAGTCAACTCTCCCCTTCGGGCGCCCCCGCCCAACGCTCAGAGGAATGGTTCGCCCTCCGGAGGGATAAATTGACCACGAGCGCCTTCAGTACCACCCTCGGCTTCTGGAAAGGCACCCGGAGGTACGAGCTCCGGCACGAGAAGGTGTTCCTTCCGGAAGGTTCCGCAATAGCGTTCGCCCCCGCCACTGCACGCGCCATGGAATGGGGTGTGCTTAACGAATCAGCCGCGATCGAGAAGTACAAAGCCATCACTGGCCGTGAAGTGGGCTCGTTAGGGTTCGCCACGCACTCGGAAAAGAAATTCGATTGGATCGGCGCGTCTCCCGACGGGCTCCTCGGGTGTCAGTTCCCGAACCCCGGGATCCTCGAGGTGAAATGCCCGTTTAACAAAGGGAAACCCGAGTTGGGTTTGCCGTGGACGAATATACCCTTCTATTACATGCCTCAGGTTCAGGGGCAAATGGAGGTTATCGACCGGGATTGGGTCGATTTGTATTGTTGGACACCGAACGGGAGCACGATCTTTCGGGTTTGTCGGGATCGAGGGTATTGGGCGTTGATT | |||||||||
gi|124694278|gb|EH789014.1|EH789014 CNSS29056.b1_O16.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS29056 TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): AGCGGAAGGGAAGAGACACCGACGATACAGAATGTTACAGTGAGGAGCTCGGATTCGAGTACCACGATCCAAAGAAGAAATCACGCGGATCATCGTCTTCTACCAAGAGGTCCCGTGCTGCGGAAGTCCACAATCTCTCTGAAAGGGGACGTCGAGATAGGATTAATGAGAAAATGAAGGCTTTACAAGAACTAATTCCACGATGCAACAAGTCGGACAAAGCTTCAATGCTGGATGAGGCGATCGAGTATTTGAAGTCGCTTCAGATGCAAGTGCAGATGATGTCCATGGGATACAGCATGGTTCCGATGATGTTCCCTGGCGTTCAGCGGTACATGCCGGCGATGGCTGCAATGGGAATGGGAATGGGAATTGATCCTGTAGGAATGAATCGTGGCATGGTTCCGTATCCTTCGGTTCTTCCGGGTCCACCATTGCCGAATTCAGCAGCTCATCTGGGTCAACGTTTTCCGGTTCCTCGTTTTCAAATGGCACAGGTGGCTAACCCCTCAGACCCCATGATGAACTCGTTTCCTCCGCAGAATGCGAATCAACCACGGGGTCCGTTTGCAGATCCATACCAACATTGCCTTGGTCTCCCCCAAACGCAATTGCCACAACATCAACAACAACATCAACAACAACAACATCAACAACAACAACAACAACAACAGAATCAAACAGGCATGCCTGCTGTTACAAGCAAGCCGAGCAGCAGCAAAGATGTAAGATATCCCCAGCGGCACCCAACTGGCTGATTTCTAGAGCCGTGACGAATCTTTGTGCCTTTGGGGGCTGAATATCAAGGGA | |||||||||
gi|124689375|gb|EH784111.1|EH784111 CNSS23346.b1_D06.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS23346 TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): GGCGGGGAGCAAGCTTGTTCTTGGTATGCCATTTAAGGATCTTGCAACCGTAGATTCTATCTTATTGAGAGAGCTTCCACCGGTTGATGATAGGGATGCTCGGCTAGCTCTTAAAAGGTTGATTGATGTAAGTATGGGAGTTATAACCCCTCTGTCAGAACAGTTAACAAAGCCTTTGCCAAACGCCTTGGTCTTGGTAAATTTGAAGGAATTATCAAGCGGAGCTAATAAGCTCTTACAAGAAGGCACACGTTTGGTCGTGTCAGTACGTGGTGACGAGCCCTATGAGGAGCTAGAAATTCTAAAGAGCACTGATGCTACGATGATTCTTCATGATCTGCCATACACAGAGGAAAAAACCGGCAGAGTACATGCTGCTAGGAGGTTATTTGGGTATCTTTCAGAAAATTCATTGAATTTTCCGGTTCTTCACCACATACAGTTTCCAAAGGGTATTCCAAGGGATGATTTGGTGATTAGTGCTGGTGCGAATGCGGGTGCTCTTTTAGTTGATGGACTTGGAGACGGTATCTTATTAGAAGCTCCAGATCAAGATTTTGAATTTCTGAGGAATACATCTTTCAATCTACTACAAGGATGCAGGATGAGGAACACTAAAACGGAATATGTGTCATGCCCATCTNGTGGTAGAACTCTATTTGATCTTNNCAGTGATAGTGCAGAAATTAGAGAAAAATATCACATCTGCCTGGTGTTTCGATTGCGA | |||||||||
gi|124663761|gb|EH758503.1|EH758503 CNSL3329.b1_A18.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL3329, TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): CTCAAAAATTCGCTTTCATGAAGGCTTTAATAGAACACGGTTTTCCATTCCCAAATGCTATATATTGCAATCGCCAATGTGTGATTACGTCGCTTGTACAAGGCTATCCCCTTGTGCAGGTGAAGCAGCTGCAAAGTACTGATATTGTTTTTGAGAAGATCATAGGCATTATTGTCCGTCTGGCGGAACATGGCCTTATTCACTGCGACTTCAACGAATTTAACATTATGATAGATGATGATGAGAAAATTACGATCATTGATTTTCCACAAATGGTTTCCGTATCTCATCGAAATGCAGAAATGTACTTTGATCGTGATGTTGAATGCATTATCAAGTTTTTCAGCAAGAGGTCCAACCTCTCTTTTGAAGGAAATGCTGATGATTCAGATTCAGATGCAGATGCAGAGTCAGATGCTGTAAAGCCTCGCTTTTCTTCAATAAAGAAAGCTTCTGGTTTTCTTGACAAGGAACTTTCTGCGAGTGGTTTTAGCAGGAAGGAACAAGAGGATATCGAAAAGTTCAATGAAGGAGGTCTTGAAAAGATTCCTGGTTCCGATAATGAAGAAATAGAAGAAGATGAAGAGGACACTTCCTCGACAATAAATGAATCAGACATCCAAAATTTTGATTCTTTATGCTCATTGACCAAGGATGATGACAAACCAAAGGCTTGCAGCAAGAGTGGTGAAGTAGAAGAGGATCAACAAAACTCTGACGGAAAGCATCATGATACAAGCGATCAGGTGGAAGATAATGAAAATGA | |||||||||
gi|124685860|gb|EH780600.1|EH780600 CNSS19438.b1_K12.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSS19438 TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): CGCGGGGAGTAGTATGGGAGTTTAACCCCTCTGTCGAACAGTTAACAAAGCCTTTGCCAAACGCCTTGGTCTTGGTAAATTTGAAGGAATTATCAAGCGGAGCTAATAAGCTCTTACAAGAAGGCACACGTTTGGTCGTGTCAGTACGTGGTGACGAGCCCTATGAGGAGCTAGAAATTCTAAAGAGCACTGATGCTACGATGATTCTTCATGATCTGCCATACACAGAGGAAAAAACCGGCAGAGTACATGTTGCTAGGAGGTTATTTGAGTATCTTTCAGAAAATTCATTGAATTTTCCGGTTCTTCACCACATACAGTTTCCAAAGGGTATTCCAAGGGATGATTTGGTGATTAGTGCTGGTGCGAATGCGGGTGCTCTTTTAGTTGATGGACTTGGAGATGGTATCTTATTAGAAGCTCCAGATCAAGATTTTGAATTTCTGAGGAATACATCTTTCAATCTACTACAAGGATGCAGGATGAGGAACACTAAAACGGAATATGTGTCATGCTCATCTTGTGGTAGAACTCTATTTGATCTTCAAGTGATAAGTGCAGAAATTAGAGAAAAAACATCACATCTGCCTGGTGTTTCGATTGCGATTATGGGTTGCATAGTTAACGGACCGGGAGAGATGGCGGATGCAGACTTTGGATATGTTGGTGGTGCACCTGGAAAGATCGATCTTTATGTTGGAAAGACTGTGGTAAAACGAGGAATTGCTATGGAGAATGCAACGGACGCTTTGNATTCACTAAATTAAGACCATGGACGGTGGGTGGATCCTCCTG | |||||||||
gi|124665788|gb|EH760528.1|EH760528 CNSL6623.b1_M23.ab1 CNS(LMS) yellow starthistle Centaurea solstitialis cDNA clone CNSL6623, TCTGCATTTGCACCTGCACC EST sequence (targeted fragment marked with yellow): GATTTTTCGTTACTGAATACATTTCTCAAGAATTGAATCCGGTTTCATGGCTTTATGCAGTGCAAGTAGTACAGCTGCAGGTGCAGGTGCAAATGCAAACTCAATGGTAGATATAATGACGTTCGTAGGATCTGATGCACTAGCCGAGCTAGTTTATTCTCCACGTAAAGGATTAAGCATCAAATTTGCCGAAAAGAAACCTTGTTTTATGCGGGAAGTTGGTCCAAACAATATGGATTTTTTAGGGTCTGAAGACACTAGAGATCAAAAACACGTCAAGTGTTCAAGCCCAGTCGAAACACCGAAAAGCACAAGTCATGGACCCACAGGTCCACAAAACCAAAAAATAAGCGATCCATTACTGGAACGCTTGTTTGAAGATGGAATGACTAGCGGTGTTCACAAGTCGGATTCCAATATTATATCACATTTGAAAATTGAACCCCCGACACAACATGGGCCCCACGAACATGTGGAAAGGTCTAAAACCGACAAAGATAACGACCCTTTTCTTGAAAACACACAAGATGTTGAACGGGTCGGTTTGTTTCAACGTGAAGATAGGGAAAGATCGATTTATTCTCGAGAAACGGATCAAAAACTCGAGGTTGAGAGCCACGGAAGCATGGAAAGTTGCGAAAACGCTACTTCTCTGGCCAAAAGAAAGACGAGATTGACGTTCGAAGAACAATTGATTCATGGAACCAAAAGAATAAAGAAACAAGCCAATCATTATGATC | |||||||||