| mature miRNA: TCTGTACTCTCTCTCTTCTTC species: Ricinus communis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|111143266|gb|EE256913.1|EE256913 RFAAL78TH Castor bean cDNA library from flowers,800bp Ricinus communis cDNA clone RFAAL78, m TCTGTACTCTCTCTCTTCTTC EST sequence (targeted fragment marked with yellow): AACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGAGGCTCAAGGATTAAACAAAGGAAAAGAAATCAATCAAAGTCACTGTTATTCGTTTCTGGGTTTTATGGTTTTAGCTTTGATTGAATTCTGAGTCAACTCGACCGATTTCATTTCTTCTTTCTCTTGCCTCCGCCTTAAAACCTTCCAATTCGTCTCGACGCAGTTTCGTAGACACACGCCCTTGTCGTTTTTGTTACCAATTTTTATTTGAAGGTTTCGGTTTTTATTTGTACGGCTTTGATTCATTCAATACTCTGGTGGGTTTCTTTCAGATCTCGCAGTCTGGATACTTCTGATTATCCAGTAGTGTAGAAATGGCTTATTGAAAGGAGCATTGAGACTGAAATCTTTTTCCTGGGTCTGTGATTTTGTCGGTTATGATTTCTTCTTTTTGAGTTGTGGCTGGAGTTTCTATTTGAGGCTACTATTTAATGATTGATACTGAATCATACTATTTGCTGCTAAATAAATCACATTTGGCTTTGGTGTTTGGCGCTTTCCTGGGAGGGAAGAAGCTCTCTTCCTTCTTCGCCGCCTGTCTCACCGGCCACATAGACTAGAGGACTCCTGTTCCATTTCATGTCTCGTAAGTTGGACAGCCCAGTTCAGACTCAGATGGCAGTGGCAGTCTTTAAGAGTCCGCTCAGCGGGGAATATCACGGGAGCAGGAAAATGGATGGGAAACAACCTGCTGGGAGGAGACGGGTTTTTGTGCAAACTGAGACTGGATGCGTCTTGG | |||||||||
gi|111156008|gb|EE259698.1|EE259698 RFAB558TH Castor bean cDNA library from flowers,800bp Ricinus communis cDNA clone RFAB558, m TCTGTACTCTCTCTCTTCTTC EST sequence (targeted fragment marked with yellow): AATTCGGCACGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGAGTGCAGAGACAACAAAAAAAGCAAAAAAAATGTTCATAAACAGAAATGCAGAGAAACACCAAAAAGAAACCCAGAAAAATTGAAGCCAGAAATTAGTCAACAGCAATGCATTTCACAAAAAGGATGAATCTTGTCAACACTTAAAGAGAAATGCAAAAAAGAGTACCTATTATAGATCACCCAGAACCCAGAGCAAATCCACAAGAGCACAAAAATCCCAGTATGTAAAAAGAGTTTAAGGCTCAAACAAACTCAAATTAAAACCAAATTTAAACTAAAAAAACAAATCATACCCAGTTCGCCTTTTCTTTTTGAGAGGTAAAGAAGAGTTAATTTTTGAGTGAGCAAATGAGTAAAACTGGCACGGGAATCAAGAGCGAGGAGGATAAAAAGGTTTGTTAAGAAAGTAGAAGAAGCCAATCAAATGAAAACAAAGGCCCTTGATTGAAGAGAATAAATAAATTCCAGTGTCATATTATTCTCTTATGATAAATCACATCAAGCTCCACTGGTAGTATTAAAACTTCAATACTTCGAATATTAGCTCAACTAAAATGAAAACAAATTTATTTCTCAAAAAAAAAAAAAAAAAGGAAAAAGTCTTGGAGAAAAAAAATAGTAATCAAAAGTATAAAATCGCGTTGTACTAAGACCCAAATTTCCAACAACTAACCCAGAGAAAGGGAAAAAGAAAAGCATAAATTGACATGATCATAACGGAACCGTAAATTTAGCCCAAGACTATGCTAATTAGAGACTTCAAAGAGAATATATATATTAAAAAACTTACATAAACAGCTTCCAAAGCACGACTTTATAGAGAGAGCAA | |||||||||
gi|158710169|gb|EV522444.1|EV522444 JB2_41_D12 Castor seed endosperm Ricinus communis cDNA 5', mRNA sequence TCTGTACTCTCTCTCTTCTTC EST sequence (targeted fragment marked with yellow): CAGCAGCAGCAGCGCGACCAGAGAGTCGAGAGCGTTTAGTATAGAGAAACCATAGCCATAAAATTGCCATTACTTCTTAATCTTCAACCAAGCACCTTTCAGAATCTATACGTAAGCGCACATACTCAACTCGCGGACTCTACCTTTAATCGGTTTCAGTAATTATCATCATCAGCAACTTCTTCTTCAAAAACCCTAAATATGTCGGGTGGGTTTTTCAGGGGTACTTCTGCTGATCAGGACACTCGGTTCTCCAACAAGCAAGCTAGGCTTTTGAAATCGCAGAAGTTTGCTCCTGAATTGGAACATCTGGTGGATATGAGGAAAGTCAAGATGGATGTTATTAGACCATGGATTGATAATCGGGTGACTGAGCTTCTTGGGTTTGAAGACGAAGTTCTTATCAACTTTATTTATGGTCTCCTTGAAGCTAAGGAAGTGAATGGGAAGGAGGTCCAAATACAACTTACAGGATTTATGGAGAAAAACACTGTAAAGTTTATGAAAGAGCTTTGGGCACTTCTTCTCAGTGCTCAGAAGAATGAAAGTGGTGTTCCTCAGCAGTTCTTGGATGCCAAAGAAGAGGAAACCCGCAAGAAGCAGGCAGAGGTGGATAGGATAACCAGTGAAATTCAGAAGAAGAAAGAGAAAGAGAGTAAAGAACTTGAGTGGGAGAAATTGAAGAAGATGGACGGCGAAACAAAGGCTAGTATTGCTGCTGTGGAACCAGACTCAAGGAATTTGCTGAAGGCTTCAAGGGATGATCCTAAGGAT | |||||||||
gi|117353612|gb|EG684205.1|EG684205 RCRAS14TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRAS14, m TCTGTACTCTCTCTCTTCTTC EST sequence (targeted fragment marked with yellow): AGCCTATTATCATATACTACTGCAATATTTGCATCTTTGTTTCTCAGCCTCACCCATTAAAACAAAAAAAAAAAAGAAAAATCTAATCTTGAAGGAGAGAAAGAGAGAGCGTACAGATGGATATCTAAATTATGTGAGAGACGAGGGAAGGCAGGCTCCAGTCCTCGCACGTGTTTTCTCTCCGTATTCTTCTCTTTCTAATTTTAGCTCCCTTACTAATTTTTAATTTTTTTCTCTCCTTTTTCTTATTTATTTATAATTTTGTTCTTCATTCAATAATTTCGACAGAGATCTTTTATTAATTGAGTCCCTTTCCATTCCCTTCTCCCCTCTCTGGATAATCCTCTGACAGCCTAGAGGGACTCCTTACTTTATATTTTTCTGATGGAGGATGTAGAGGTTGTAGAAGTTAAACCTCCCTCAGAGTCGTCTTCGTCTGCTCAAATTAGCAATCACTCGAATGGGGTAGATTCAATAAGCAAGGTTGCTAATGGAAAATTAGAATCTGACAGAAAGTTACCAACAATGGAGAATTCTAATTCTGCAACTATTGAAGATGTATTCAATAACCCTGTTCTGGGCCAAGGTCAATCTCTCCT | |||||||||
gi|117336207|gb|EG667997.1|EG667997 RCRC416TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRC416, m TCTGTACTCTCTCTCTTCTTC EST sequence (targeted fragment marked with yellow): TATTAACAAAAATCAAGAATATGTCAAACATACCCACTTCTCTCTCTGAAGTTTGCCTTACTCTTTTCCGTTTAGCCATGTCCACCGCTGACCCATGGCCCTTTTCTTAAATCTTATCATATCGTCCTTTTTGTATATTAGATTTCACAAAAACTCGGAACAAAAATATCCACTTGCATTTAATAAACCGTTATTTTACCATATAATCAAATCATGATGAAGTTCAAAGGCTTCAAGATTGGAAAACGGCTGGTTCGGACCTCCAGATGGATTTTCAGAAGGACCCGGAACAATCCCAGATACGACAGGCTATGCTCATCAGGACCAACATGCAGGCTGAAGCCTCTCACGAAGCTTATCAACTGGGGTCGCCGCTTGACAAAAGGCGCAAAATCACTATGCTCTGCAAAACCCGGGTCGGGTTATACCCATATCGGCGAGGAGCCTATCCATGAAAAACCGGTGACAGTGCCTAAAGGACACTTGGCGGTTTATGTGGGTCAAAAAGATGGGGACTTTCATAGAGTCTTGGTACCTGTAATCTACTTTAATCATCCTCTATTTGGCGAGTTATTAAGGGAAGCGGAAAGAGAGTATGGATTCAATCAACAAGGTGGGATTACTATTCCTTGCCGATATTCGGAGTTTGAGAGAGTCCAAACTCGAATTGCG | |||||||||
gi|117340529|gb|EG671795.1|EG671795 RCRA966TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRA966, m TCTGTACTCTCTCTCTTCTTC EST sequence (targeted fragment marked with yellow): GATAAAAGGGAAAAAAAAACTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGAGGCTCAAGGATTAAACAAAGGAAAAGAAATCAATCAAAGTCACTGTTATTCGTTTCTGGGTTTTATGGTTTTAGCTTTGATTGAATTCTGAGTCAACTCGACCGATTTCATTTCTTCTTTCTCTTGCCTCCGCCTTAAAACCTTCCAATTCGTCTCGACGCAGTTTCGTAGACACACGCCCTTGTCGTTTTTGTTACCAATTTTTATTTGAAGGTTTCGGTTTTTATTTGTACGGCTTTGATTCATTCAATACTCTGGTGGGTTTCTTTCAGATCTCGCAGTCTGGATACTTCTGATTATCCAGTAGTGTAGAAATGGCTTATTGAAAGGAGCATTGAGACTGAAATCTTTTTCCTGGGTCTGTGATTTTGTCGGTTATGATTTCTTCTTTTTGAGTTGTGGCTGGAGTTTCTATTTGAGGCTACTATTTAATGATTGATACTGAATCATACTATTTGCTGCTAAATAAATCACATTTGGCTTTGGTGTTTGGCGCTTTCCTGGGAGGGAAGAAGCTCTCTTCCTTCTTCGCCGCCTGTCTCACCGGCCACATAGACTAGAGGACTCCTGTTCCATTTCATGTCTCGTAAGTTGGACAGCCCAGTTCAGACTCAGATGGCAGTGGCAGTCTTTAAGAGTCCGCTCAGCGGGGAATATCACGGGAGCAGGAAAATTGATGGGAAACAACCTGCTGGGAGGAGACGGGTTTTTGTGCAACTGAGACTGGATGCGTCTTGGGGATGGATTGGACCGCGGGGACATGCCCATACA | |||||||||
gi|117359155|gb|EG689748.1|EG689748 RCRBN79TP Castor bean cDNA library from roots, 1.8 kb Ricinus communis cDNA clone RCRBN79, m TCTGTACTCTCTCTCTTCTTC EST sequence (targeted fragment marked with yellow): GCCACACCATCACTTTCCCTTCTGTTCCGCCGCCACCACCACCGTCACCCTTGAACAAGAATTGATTCTTGGGACGAAAAGAGACTTGTGTTTCTTAGGGTTGATATATCAGGCAAGTTTTAATGAAAATCTTCTTGTATATTAACAAAAATCAAGAATATGTCAAACATACCCACTTCTCTCTCTGAAGTTTGCCTTACTCTTTTCCGTTTAGCCATGTCCACCGCTGACCCATGGCCCTTTTCTTAAATCTTATCATATCGTCCTTTTTGTATATTAGATTTCACAAAAACTCGGAACAAAAATATCCACTTGCATTTAATAAACCGTTATTTTACCATATAATCAAATCATGATGAAGTTCAAAGGCTTCAAGATTGGAAAACGGCTGGTTCGGATCTCCAGATGGATTTTCAGAAGGACCCGGAACAATCCCAGATACGACAGGCTATGCTCATCAGGACCAACATGCAGGCTGAAGCCTCTCACGAAGCTTATCAACTGGGGTCGCCGCTTGACAAAAGGCGCAAAATCACTATGCTCTGCAAAACCCGGGTCGGGTTATACCCATATCGGCGAGGAGCCTATCCATGAAAAACCGGTGACAGTGCCTAAAGGACACTTGGCGGTTTATGTGGGTCAAAAAGATGGGGACTTTCATAGAGTCTTGGTACCTGTAATCTACTTTAATCATCCTCTATTTGGCGAGTTATTAAGGGAAGCGGAAAGAGAGTATGGATTCAATCAACAAGTGGGATTACTATTCCTTGCCGATATTCGGAGTTTGAGAGAGTCCAAACTCGAATTGCGGCAGGTCCGGTGTCCGTGCGCTGATGCGGAGACGCAACCACTATTAAAGTGGTCGGTATGAGATGATGACGATGATGATAGTACGT | |||||||||
gi|117366536|gb|EG697129.1|EG697129 RCSC503TP Castor bean cDNA library from seeds (12-33 days after pollination), 1.4 kb Ricinus TCTGTACTCTCTCTCTTCTTC EST sequence (targeted fragment marked with yellow): AAAGAGCTGAAATTTATCATAACGACCTTTGCAGTTGAATTGTTAGCGAGACGATGGCATCGACGCAGGAGAAGGAAGAGAGAGCGGAGGCGGAGGCACGGCAAGCAGCGCGTGATTTGAGTGATGCTAATAGACAAAGAGAGTATGAAGAAAGGGGTAAGATGGGGACCGCTGGTCACTATGCGGAGCAGCAAGAAGAAAGGCCAGGCGTTATTGGGTCTGTGCTGAAGAAAGTTGCTGATACTTACGAACATGCTAAGGAAGCTGTTGTAGGTAAGAGCCAAGAATCCGCCGAGAAAACAAAAGAAAGTGCATACACGGCCGCGGAGCAGGCGGGAGAGAATAAAGATTATACTAGTGAGAAGGCGAAAGAGACTAAAGATGCTGCTGCAAGAAAGTTAGATGAAACGAAAGAAAGTGCTAAGCAGAAGGCAGGAGAGTATGCAGATAAGACGAAAGAAACCAAAGATGCGACGAAGGAGAAGTTAGGGGAGTACAAGGATCGTACAGCTGAGAAGGCACAAAATACTACTGAATCTGCGAAGGAGAAGGGAGAAGAATATAAGAATTATGCGGCGGAGAAGGCCAAGGAGATGAAGGATAAAACAGCAGAGAAGGCTAAAGAGACCAAGGATTATTCTGCTGAGAAGGCTAATGAGGCAGCAGAGAAAGCAAAGGAAGCTAAAGATTATACTGCTGAGAAAGCTAAAGAGGGAAAAGATACTGCTACTAGTAGACTTGGTGAACTTACCGAATCTGCTAAAGTGCTGCAAGAAGAGCTATGGACCTTTTCTCCACTAAGAAAGAAGAGCTAAAGATAAACAGTAGAGACTAAAGAAGCAGCAAGAGAAATAAGTGAAGCTGAGAGAGCGAGACGAAGATGGAGAGTAAAGATG | |||||||||