| mature miRNA: TCTGTTTGGTTGCTGAGAAAG species: Raphanus sativus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|167438018|gb|FD945658.1|FD945658 RS2HH89JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): ACAGCATATAGTAATTTCTCAGAAACCAAGTAGAAGAATGTAAATAGAACAGAACACTCACGTCATAGAGCTTTTTGTAGTCCAGCCTTTCAACCTTCCTCCTCCCCGGAACATCATCACCAATCCCAGCATCTGTCTCTGAGATGGAAACATCTGAGAGCTGTGCTTTCTTTCTTCCTTGTTTCCCACGTGGTGTAACTTTATCTTGCTGATCAGACTCATCGCCTTTGGAGGAAGTCTCCACATCCTCGGAGTCTGAATCGTCTGAATTTGAACTTTCTTGCATTTTATCTTCTTCATCAAGAGTAGGGGCATCAGGATCATAGTCATCATCCTCAGAATCATCAGACGGAAGGTTCATTATATCTTTTGCATCTTTGAACGATCCAATCATTACGTCAGATGCAGATTCATCTGAACTTCCATCTTCGTTTTCAGACTCATCATCATCACTGTCATCATTGCCATCTCCATCACCTTCAGCATCATTCAAACCATCCGGATCATACTCTTCGTCCTCAGAATCATTAGAAGGAAGATCACAGTCCAGATTTTGACTTCCACCACCAGCCATTGCTGCTGCTGCCTCAGGAAATACTTTCTGCACAAAAGCCGTTGAGTCAGGTGAAGAAGTTTTTAATCATTTTTAACAAATAAAAGAAACATCTTCTTGTATTACCTCCCAACTGTCGCTAACCGAAAGCTTTGTCCCTAAAGAATCATTAAGCAAGTCGAAGCTGTAATCTTTGCAAGCACATCCGGGGCATAACCAACTCTCATCATCCGGAGGAACTAACAAGAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|166138053|gb|FD569489.1|FD569489 RS2F334TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): GCAGACTATTACGAGCGTGCTTTGACAAACGGTGTGCTTGGGATTCAAAGAGGAACCGAGCCTGGACGGATGATCTACATGCTTCCGTTGGGTAAAGGTGTTTCTAAAGCCGTGACTTATCACGGTTGGGGAACACCTTATGATGCCTTCTGGTGTTGCTATGGCACTGGAATTGAATCTTTCTCAAAACTGGGAGATTCTATATATTTTCAAGAAGATGGGGAATCTCCAGCTCTTTATGTCACACAATATATATCAAGCACACTTGATTGGAAGTCTTCTGGTGTGTCGCTATCTCAGACGGTTAAACCGGTTGTGTCATGGGATCCGTACATGCGTGTGACATTCACTTTCTCTTCTTCCAAAGGGGGGATAGGGAAGGATTCCACTTTGAATCTAAGGATTCCTGTTTGGACAAACTCTGAAAGTGCTAAAGTATCTTTCAATGGACAATCCTTGAAAGTTCCAGCTTCAGGTAACTTTCTATCAATCAAACAGAACTGGAAATCAGGAGATCAAGTAACCATGGAGCTACCCTTAAGTATCAGAACAGAAGCTATAAAAGATGATCGGCCGGAGTACGCATCTCTCCAGGCCATACTCTATGGCCCTTACTTGTTAGCTGGACTCACGAGCAGGACTGGAGCACCACAACTCAAGCTAAAGATGGGATATGGATAAGCTCTATCCCTGAACAACACACTCACTCGTCACACTCTCACACAGTCTGGAACACATCTACGTCTGTCAATACACAAACATCATCATGAGTATCGCCGTGCAGGACACAGCGCGT | |||||||||
gi|167436177|gb|FD943284.1|FD943284 RS2GL52JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): ACGGTCGAGGATGGAAAGCGTCGGAACTGAGGCTCAAGTCATGGGATGATCTTCAGAAGCTGTGGTACGTTTTTCTCAAAGAGAAGAACATGTTGATGACTCAGCGTCAGATGCTTCAAGCTCAGAACATGATGTTTCCTAACCCTGAACGCATTCCTAAGGTGAGGAGATCAATGTGCCGCATAAAGCATGTCCTGACAGAGAGAGCTATTGAAGAACCGGATCCCAGAAGATCTGCCGAGATGAAGAGAATGGTCAATGCTATGTGATCTTCTTGTGCTTTTCTTATCAACCAAGCAGTGAATTTGAGTCAATTCGCATTTGGGATTTTGAAGTAACAAATAAAGCATTCTCAAGAAGCTGGAGAAGACGTTATGGTCTCTAATTAATGGTTTGTGCGTCTCTTATTAGAAAAATGTTGGTCAGTAGCTATATGCACTGTTTCTGTAAAACCATGTTGGTGTTTTGTCAGTTTATTCAGAGCTTTTTGTCTTCGAACACAATCTAGAGAGCAAATAAATTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|158915155|gb|EX887554.1|EX887554 RS1BV14TF RS1(AR) Raphanus sativus var. oleiformis cDNA 5', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): GGTCATGGGATCCATACATGCATGTGACATTTGCTTTCTCTTCTTCCAAAGGGGGAATGGGGAAGGAGTCCACTTTGAATCTAAGAATACCTGTTTGGACTAACTCTGATAGTGCTGCTAAAGTAGCTTTGAATGGGCAATCTCTAAAAGTACCAGCTTCAGGTAACTTTCTATCAATCAAACAGAACTGGAAAGCTGGAGATCAAGTAATGATGGAGCTACCGTTGAGTATCAGGACCGAAGCTATACAAGATGATAGGCCTGAGTACTCATCACTTCAAGCCATACTCTATGGTCCCTACTTGTTAGCTGGACTCACGAGCAAGGACTGGAGCATCACAACTCAAGCTAAAGATGGGAAATGGATAAGCTCCATACCCGAAACTCATAACAGTCACCTCGTCACGCTTTCGCAACAATCTGGTAACATATCTTACGTGTTGTCAAATAACAACCAAACCATCACCATGGAAGTCTCGCCCGAGCCGGGAACACAAGCCGCTGTTGCAGCCACTTTCAGTCTCGTGACCACTGATTCTAAGGGGAAGATTTCAGGTCCAGAGGAGCTAACTGGAAGCGTGGTTATGATAGAACCGTTCGATTTCCCTGGAATGCTTGTGACGCAAGCAACTGGTAGCTTCCTTGCGGCTCAAGATTCTTCTTCTACTGATCAAGAAGCCTCGAGCTTT | |||||||||
gi|167443923|gb|FD950110.1|FD950110 RS2HH89TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): GGCATTGTCATCTTTTGGCCGTAAAAGACAACTATACTTTGTTTTTACCTGAGTTCTGGGATTTGTCTGTTTAGATGATGCAGAGCTGCTTTTTTCAACAGAGCAGCAACCATTTTCTCTGGGTGGTGTTTCTTGTGGCGCTATCAGAGTAGTTTTTTTATATTCTCTTTTCGGTTTCTGCGTAGGTTTCTGAGCAGAAGTATGATCTTCTACTTTTGAAGGCTGTTCCAGAGGCAAAGTGTCTCCTTCATCTGCTGACTCGGAGTCTTCTTTTCCAGCAACTTTATCCCAATCCTCATCATCACTAGATGACGTCGGAACGTTCTCATATTCCTCCTGTACATAACAACACAACAGCATATAGTAATTTCTCAGAAACCAAGTAGAAGAATGTAAATAGAACAGAACACTCACGTCATAGAGCTTTTTGTAGTCCAGCCTTTCAACCTTCCTCCTCCCCGGAACATCATCACCAATCCCAGCATCTGTCTCTGAGATGGAAACATCTGAGAGCTGTGCTTTCTTTCTTCCTTGTTTCCCACGTGGTGTAACTTTATCTTGCTGATCAGACTCATCGCCTTTGGAGGAAGTCTCCACATCCTCGGAGTCTGAATCGTCTGAATTTGAACTTTCTTGCATTTTATCTTCTTCATCAAGAGT | |||||||||
gi|166142859|gb|FD575675.1|FD575675 RS2FW37JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): GCTTACTTCACATGTAGGGTAACTAAACAAGAAGTGAAGCTAGAGAAATTCTCTTTACCCGAAGGAGTTGTGGTCACAATACCAATGCTCTTGGTGCACCATGACCCTGATCTTTGGGGTGACGATGTGAAACAGTTTAAGCCCGAGAGATTCGTCAATGGTGTTGCAAGCGCAACCAATGGAAGACTCTCGTTCTTGCCGTTTAGCTCAGGACCTCGGACTTGTATTGGACAAAACTTTTCGATGCTGCAAGCTAAGCTCTTTGTGGCAAAGGTTCTTCAAAGGTTTAGTGTAGAGCTCTCTCCGTCGTATACTCATGCTCCTTTCCCAGCTGCAACTACATTCCCACAACACGGTGCTCATTTGATCATTCGCAAAATTTAGAAGAGATTAAATAAAGGTGCTTCCTTTTTTTTTTTCATCAACAAAACAGAAACTCGAAAATGTAGTAAATGCAGTTTGAATCCGGTCTTTATTTGGATGATTTTGTATATATAAAAGAAAACAGATTCAAATCCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|156167603|gb|EW727749.1|EW727749 RS2AH57JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): ACAATCGATTCATATGAGGATGTGCCGGCTAACAGCGAAGAGTCGTTGAAGAAAGCACTTTCTCACCAACCAATCAGCGTGGCCATTGAGGGTGGTGGTCGTGCGTTCCAGCTCTATGATTCTGGTATATTCGATGGAATTTGTGGAACAGATCTAGACCACGGAGTTTTGGCGGTCGGGTACGGAACAGAGAGCGGCAAAGACTATTGGATTGTGAAAAACTCATGGGGAACAAGCTGGGGAGAGAGCGGATACATAAGGATGGAGCGTAACATTGCGTCTTCAGCAGGAAAATGTGGAATCGCTGTCGAGCCTTCATATCCGATCAAGAACGGCCAAAACCCACCAAACCCTGGACCTTCACCTCCATCTCCCGTCACGCCTCCGACCCAATGTGACAGTTACTACACATGTCCTGAGAGCAACACTTGTTGTTGTCTTTTTGATTATGGCAAGTATTGCCTTGCTTGGGGATGTTGCCCACTAGAAGCAGCCACATGTTGTGATGACAACTATAGTTGCTGCCCTCACGAGTACCCCGTTTGTGACCTCGATCAGGGAACTTGTTTAATGAGCAAGAACAGTCCTTTTAGTATCAAGGCCATAAAGCGCAAGCCCGCAACACCATTCTGGTCGCAGAGCAGGAAGAACATTGTGTAAGAAGATGGTGACACTGCACATTTGTTTCTTCAGAGAGGATTTTGACTCATATG | |||||||||
gi|167440975|gb|FD948282.1|FD948282 RS2GW93TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): GCAGACTATTACGAGCGTGCTTTGACAAACGGTGTGCTTGGGATTCAAAGAGGAACCGAGCCTGGACGGATGATCTACATGCTTCCGTTGGGTAAAGGTGTTTCTAAAGCCGTGACTTATCACGGTTGGGGAACACCTTATGATGCCTTCTGGTGTTGCTATGGCACTGGAATTGAATCTTTCTCAAAACTGGGAGATTCTATATATTTTCAAGAAGATGGGGAATCTCCAGCTCTTTATGTCACACAATATATATCAAGCACACTTGATTGGAAGTCTTCTGGTGTGTCGCTATCTCAGACGGTTAAACCGGTTGTGTCATGGGATCCGTACATGCGTGTGACATTCACTTTCTCTTCTTCCAAAGGGGGGATAGGGAAGGATTCCACTTTGAATCTAAGGATTCCTGTTTGGACAAACTCTGAAAGTGCTAAAGTATCTTTCAATGGACAATCCTTGAAAGTTCCAGCTTCAGGTAACTTTCTATCAATCAAACAGAACAGAAATCAGGAGATCAAGTAACCATGGAGCTACCCTTAAGTATCAGAACAGAAGCTATAAAAGATGATCGGCCGGAGTACGCATCTCTCCATGCCATACTCTATGGCCCTTACTTGTTAGCTGGACTCACGAGCAGGGACTGGAGCACCACAACTCAAGCTAAAGATGGGATATGGATAAGCTCTATCCCTGAAACACACAACCTCACCTCGTCACACTCTCACAACAGTCTGGAAACACATCTTACGTCTTGTCGAAT | |||||||||
gi|156178281|gb|EW738427.1|EW738427 RS3B190JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence TCTGTTTGGTTGCTGAGAAAG EST sequence (targeted fragment marked with yellow): AAGAAAGCACTTTCTCACCAACCAATCAGCGTGGCCATTGAGGGCGGTGGTCGTGCGTTCCAGCTCTATGATTCTGGTATATTCGATGGAATTTGTGGAACAGATCTAGACCACGGAGTTTTGGCGGTCGGGTACGGAACAGAGAGCGGCAAAGACTATTGGATTGTGAAAAACTCATGGGGAACAAGCTGGGGAGAGGGCGGATACATAAGGATGGAGCGTAACATTGCGTCTTCAGCAGGAAAATGTGGAATCGCTGTTGAGCCTTCATATCCGATCAAGAACGGCCAAAACCCACCAAACCCTGGACCTTCACCTCCATCTCCCGTCACGCCTCCGACCCAATGTGACAGTTACTACACATGTCCTGAGAGCAACACCTGTTGTTGTCTCTTTGATTATGGCAAGTATTGCCTTGCTTGGGGATGTTGCCCACTAGAAGCAGCCACATGTTGTGATGACAACTATAGTTGCTGCCCTCACGAGTACCCCGTTTGTGACCTTGATCAGGGAACTTGTTTAGTGAGCAAGAACAGTCCGTTTAGTATCAAGGCCATGAAGCGCAAGCCCGCAACACCATTCTGGTCGCAGAGCAGGAAGAACATTGCGTAAGAAGATGGTGACACTGCACATTTGTTTCTTCAGAGAGGATTCTGACTCATATGAGCAAAGTGATCTCTGTAGAGATTTGTCAAATGATTGTATGTTGTTGTTTATGACATAAGATACATAAAAATGCAGCTTCTGGGC | |||||||||