| mature miRNA: TCTTCCCTACTCCACCCAT species: Citrus clementina database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|110869596|gb|DY289342.1|DY289342 IC0AAA72AF07RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): ACCCTATTCCTGGGTGCATTGGGGAAAATCTTGGCGAAAATTGTTTATGGGTGAAAGGCTTTATCCTTATTTTCCGGGTATCCTTTAATAGCTGGAGTAGGGAGGCGATTAAGTATGCAGGACCCAACTATTGCCCCGCGACCGCCCTCAGGCTGGGATGGTTTTTTGGCCCAAAAAAAATGGGGAACCCCCGAAAGCGTGTGGGGCACCCTTCGGTATCCATTGGGGATATCTTCGGTGCCCCAAATTGTGAATTTCCCCTCTCCCCCCGGCTTCTAAAATTATTTCTATTCAGTGCCGA | |||||||||
gi|110866630|gb|DY283759.1|DY283759 IC0AAA5BG11RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AAAAATCAGAGTGATCGGTTTCCTCAAAATCTAAAAGATCAAAAGGGCAAAAAAGAAATGGCACCCTCTCTAGTAGCCAATTCCGCTCCGGTATTCTGCAAATTCAGCCGCGCAGAAGACGCTGCGTACATCCGACGCGCCGCCGATATAGCTGACAAGTCTGCTGGTTTCACATCCCCGCACCCGAATTTCGGCTGCTTGATTGCCACCTCAACCGGGAAGGTTGCAGGAGAGGGCTACTTGTACGCGCAGGGTACCAAACCCGCGGAGGTGCAGGCAGTGGAAGCCGGCGGCTCTTTTTGCAGAGGCGCCACCGCGTATCTGAACATGGAGCCCGGTGATTGCCACGGTGACCACACTGCTGTTTCTGCTCTTGTTCAGGCAGGAATTACAAGAGTTGTTGTTGGAATCAGGAATCCTTTGCAGCATCTTAGAGGCCAAGCTGTACGTGCATTAAGAAGTCAAGGGCTGCAGGTTCATGTTCTTGGAGAGGATTTACAAAGTAAAATTATTGAGGAAGCTCGAAAATCTTGCCTCCTTGTCAATGCTCCTTTGATTCATCGAGCTACTTCTCGAGTTCCCTTTTCTGTTTTCAAGTATGCTATGACCCTTGATGGAAAAATTGCTGCAAGTAGTGGACATGCAGCGTGGATAAGTAGCAAAACGTCTAGAGACCGAGTTTTTGATTTGCGGGGTAGAAGTGATGCAGTTGTAGTTGGGGGAAATACAGTTCGCAGGGATAATCCACGGCTAACTGCAAGACATGGAGGTGGGCATACGCCCATGAGAATTGTATTGACACAAACTCTCAACCTTCCCGAGGAAGCNAACCTTTGGGATGTTTCTGATGCACCTACCATTGTTGTAACACAACGGGGAGCTAGGAGGAAGTTCCAAAAATATCTTGCATCTAGAGGAGTTGAAGTAGTGGAGTTTGACATCTTAAACTCTAAAGAGGTTAGGGAATATTTTTCCGACCGGGGGCTATTTTCTCATTTTGGGGGGAGTGGGGGAGGAACATTAACCCACATCCTGGCTATCTCATC | |||||||||
gi|110852664|gb|DY273615.1|DY273615 IC0AAA34BG08RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AAGGAATCAATCCGGGCTCGCCACATAAAATCCACTCTAATCGCAGTCGGCTCCGAACGAACTCCCACTCACACTGACTTCGCAGCCGATCCGGATTACTTATGGGAGACTCAAACAAGGATTCATGTTCCTTCCTCTCCGAAAAATCCGCCAAGATCTTCGTCGCCGGCCACCGCGGCCTAGTCGGCTCCGCCATCGTCCGGAAACTCCTCTCCCTAGGCTTCACCAATCTCCTCCTCCGCACCCACGCTGAGCTCGATCTCACTCGCCAATCCGACGTCGAATCATTCTTTGCCGCCGAGAAACCTAGCTACGTCATCGTGGCCGCCGCCAAAGTCGGGGGCATCCACGCCAACAACACTTACCCGGCCGAATTCATCGCCATCAACCTCCAAATCCAAACCAATGTCATCGACTCCGCCTTCCGTTACGGCGTCAAAAAGCTCCTCTTTTTAGGATCCTCTTGCATTTACCCCAAATTCGCCCCGCAGCCAATCCCCGAAAACGCCCTGTTGACGGGCCCCTTGGAGCCGACGAATGAATGGTACGCTATAGCCAAAATAGCTGGGATTAAGATGTGCCAGGCTTATCAGATTCAGTATAAATTCAATGCAATTTCTGGGATGCCCACGAATTTATATGGCCCCAATGATAATTTCCACCCCGAAAACTCCCACGTGTTACCCGCTTTGATGAGGAGATTCCACGAAGCTAAGGTGAATGGAGCTAAGGAAGTGGTGGTGTGGGGCACTGGCAGTCCGTTAAGGGAGTTCTTACACGTTGATGATTTGGCTGATGCAGTGGTTTTCATGATGGACGAGTATGATGGACTTGAACATTTGAATGTGGGGAGTGGGGAAGGAAGTGAGCATTAAAGAGTTGGCGGGAGTTGGTGAAGGAAGTAGTGGGGATTTGAAGGAGAGCTTGTTTGGGGATTCATCCCAGCCCGATGGAACGCCCAGAAAGCTGATGGATAGTTCTAAGCTTGCCCGGGTTGGGGGTGGAGGGGCAAAAATGAACCTTAAAAATGGGCCTGGCGAAACCT | |||||||||
gi|110884267|gb|DY301533.1|DY301533 KN0AAQ13YG03RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AGCAACTGTCGGAAGAAGAAGGTTCACAGACGGTGGCGGAGCAAACTGCTCAACCCACAGAAACAGTAGGAACCACCCAAGCCTCGGTCGAAGCCACTATGGAATCTGTGACTGTGAGCGGTACCGAGTCGACATGCAACAACAACTGTGAAACTTCCGGTGCCATCGCCGACGGAGAACGGGAGAAGACGGTAGAGTTTGCAGACGAGTTGATGGAGAAAGGAACCAATGCTTTGAAAGAAAGTGATTACGGCGAGGCTGCTGAGTGCTTTAGCCGTGCTTTGGAGATCAGGGTTTCTCATTATGGTGAACTTGCTCTTGAGTGTGTAAATGCATATTATCAATACGGACGTGCACTGCTGTACAAAGCTCAAGAGGAGGCAGATCCATTGGTTTCAGTGCCTAAAAAGGAGGGTGATTCTCAACAAGGCTCTGACAAAGATGACTCTGTTAAGAATGCTGTTAATGGAGAATCTTCTACGGCTTCTGTTTCAAGTAGTGCTGAACAACACGGCAGTTCAAACAATCAGGATGAAGCAGCAGATGATGTTCCAGGTGACAACGAAGAAGATGAAGAAGGTAATGATGGTGAGAATGTTGCTGAAGCAGATGAAGACGAGTCTGACCTTGATTTGGCATGGAAAATGCTAGACGTTGCAAGGGCAATTGCTGNAAAGCACTGGGGTGACTCAATGGAGAAAGTGGACATATTATCAGCATTGGCTGAGGTTGCACTNGGAAGAGAGGACATTGAAACGTCTCTTAGTGACTACCAGAAAGCACTAACTATTTTGGAACGTATGGTTGAACCTGACAGTCGACACTTACCTGAACTAAATTCCGCATCTGTTTTATGTCTGGAGATTGGTTCCAAGCCTCCAGAAGCAATTCCTTACTGCCACAAAGCCATATTCTGTTTGCAAATCCGGGGTAAAACGGCTCTTGAACAAATTAAAAATTTTGGGGGAATTCAGTTACTCCAATCTGGTCCTGGTGGAATTAAATGAAGGGGATTCAAGCAATTCCCTCCAGTAAGCCCCCCAAAATGGAAAAAACTTCTTGAAAAAAAAAAGGGAAAAACAAAAAATTTAAAAAACCTCCCCTGGGCCCCCCGTGGTAGAAAACTGGGAAAAAAAAAAACTTGGTAAAAATTTTTAACAAAGAGGGGTGGCCTTTGTAAACCCCCAAAATTTTTTATTTTTTTTTTTAAAAAAAAACCTGGGGGGGGGGGAGAAAACAACTTCCCCGGTCCCAGAGGGGGGGCTAAAAAAGGGGGGGGAGTAGTGAAGAAAGAAAAAAAAATAAATATTCTT | |||||||||
gi|218829201|gb|FC913043.1|FC913043 IC0AAA40DA09RM1 IVIA1 Citrus clementina cDNA clone IC0AAA40DA09, mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AAGGAAGCATGTACGTCGGGCCTTCGTCAACGGGCGGGTTTCCTCTGGGCATGGGCGACGTCACAGGTGTCTATCAGCCCACAGGCGGCCACCACCACGATGTTGGCGGCGGCGGCGGATTCAACGAGCGCCTCATGGGGATGGGCCACAACCTAGTTTACCACTGGCACAACAACGGAATCTGAGATGTGCCGCCTTGCGGAGCTTAGGCCAGCAGCCACAAGGTCACATCGGGCACGCCGCTGGCGGCCGATCCGGAGGAGACGACGGACTAGGAAGAGGGAGCGTACCGCCTCTTTCTCTGCGTCTATTGTCTCTGGTGGCTTCCTCTCAGAATTGACGATATCAAAAGCAAAAAAAGAAGGAAAAAATTTACCAAACCTCAGAGCAAAAAAATGTGAGGAGGGCGCGAGAGGTGACTGCGAGAAGAGAGGACAAACCCTTCTTTGAAAAAGCAAGTTGGCCTATTACTGTGGTACAAGACTGTCCCACAGAGTTGGGTGCAGTAGGGAAGGATCACGACCAGACGAAACGACAACGAACATTACATTCATCACCACCAACAAGCTCTTGGCCGCAGACCCTGGAGGTCATGACGGACCACGAGCTCGTCCAGAAGGGGACACCACCGCGTGCAGACAGCATCAGCATCAGCCCAGCCCAGCCCAGCTCAGGGTCATGGGTTTGAACCCTGCCAGGCCAGACGGTGCTAACTTGCTTCAGTACTGCCTACTACTACGTTTCTCGTAGCAGTAGGCTGGCTGAAGAAGCGAAGCATGGCAGGCCTGGGGTCTCTTGGTGGGGCCGCAGCGAGAGGGCACGACTCAGAGTGGCCTGTGGCGTCGATTCTTGTTGGCTCTATCGACGACCAAATATCAGATTCCCAGATTCCC | |||||||||
gi|110856207|gb|DY272105.1|DY272105 IC0AAA30BA04RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AAAATCCACTCTAATCGCAATCGCCTCCGAACGAACTCCCACTCACACTGACTTCGCAGCCGATCCGGACTTACTTATGGGAGACTCAAACAAGGATTCATGTTCCTTCCTCTCCGAAAAATCCGCCAAGATCTTCGTCGCCGGCCACCGCGGCCTAGTCGGCTCCGCCATAGTCCGGAAACTCCTCTCCCTAGGCTTCACCAATCTCCTCCTCCGCACCCACGCTGAGCTCGATCTCACTCGCCAATCCGACGTCGAATCATTCTTTGCCGCCGAGAAACCTAGCTACGTCATCGTGGCCGCCGCCAAAGTCGGGGGCATCCACGCCAACAACACTTACCCGGCCGAATTCATCGCCATCAACCTCCAAATCCAAACCAATGTCATCGACTCCGCCTTCCGTTACGGCGTCAAAAAGCTCCTCTTTTTAGGATCCTCTTGCATTTACCCCAAATTCGCCCCGCAGCCAATCCCCGAAAACGCCCTGTTGACGGGCCCCTTGGAGCCGACGAATGAATGGTACGCTATAGCCAAAATAGCTGGGATTAAGATGTGCCAGGCTTATCAGATTCAGTATAAATTCAATGCAATTTCTGGGATGCCCACCAATTTATATGGCCCCAATGATAATTTCCACCCCAAAAACTCCCACGTGTTTCCCCGCTTTGATGAGGAGATTCCACGAAACTAAGGTGAATGGAGCTAAGGAAGTGGTGGTGTGGGGCACTGGCCGTCCCTTAAGGGAGTTCTACCCGTTTGATGATTTGGTGAATGCGTGGTTTTCATGAGGGACGAGTATGATGGACTTGGACTTTTGAATGTGGGGAGTGGGGAAGGAATGGAGCATTAAAGATTTGGGGGAATTGGGGGAAGGAAATAGTGGGATTTTAAAGGGAAACCTTGGTTTGGGATTCTTCCAACCCAAAGGAAACCCCCCAAAAAACCGAAGGGAAAGTTCCAACTTTGCCCCGGGTTGGGGGGTGGAGGGAAAAAATGTGCTTTAAAAAAGGGCCTTGCCGGATACCTATAAATGGGAAACTGGGCAAAATGTTAA | |||||||||
gi|218817673|gb|FC911400.1|FC911400 KN0AAQ3YP08RM1 IVIA1 Citrus clementina cDNA clone KN0AAQ3YP08, mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): CTGAAATGAAGTCCAAGAAAAGAGCTCGAATTGGGGCTGAGGGGAAAGAGGGGAAGCCAGTGGCGGAGATCGTGCTGGTGCTGTCGGCTATGTGGCGGATGAGGGGCGGAGGAGGGAAGGGCCCGACGGAGGTGGAACGGCGGTTGATGGCGGAAGCGAGAGAGAAGTTGGTGGACATGTGCGAGGGCTTGGCGCCTAAGGACATTGTGGCCAGAGACGCAATTGTGGGGCTGATTGAGGATTTGGGCCTTAACGGGAGGGTTAAGGAGCAGAAATTAGGGTTTCGTGGACAGAGGTTGAGTATTAAGGAGAAGGTTGAGCTTAGCAAGAGGAAGATGGAAGAACCTAAGAAATTCTCAACACAACCTACTACATATACTTCCAACTCGGTGCAAACAAGTTTTGGCACCGCACCTGAAAACCGTGGGACATCACATACTGTTCGAATGTTTCCATTAGATAAAGTAGGTTCCTCACCAACTCTATCCTCTGGAGGTTTCTCCACTTCATCACCTCCCGTCCATGTTCATGCTACAACTTCTGCATCTCTACCATACCAGTTGCCGAACAATGATGCAAGACCACCCACAGTCTCCACTGGGTTGCCCAGCAGCCATCTAGGAAGGGATTCGTCTTCCTTAGCACTGCCAAGGGTGGAGAAACCACAAGTTAAATTGGATGGAGGATCAAATGGGTCTTCTTATGTGTCACAAGTACAAGCAAATGCTTCTGCAAATCATCCATTAGTGAA | |||||||||
gi|110863583|gb|DY286726.1|DY286726 IC0AAA65DD05RM1 CitNFL Citrus clementina cDNA 5', mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AAAGCGAGAGCTTCGAAGCTCGTAAACGACATGAAAACCCTCAAAACGACGAGTTTGAAGAAGAAGAGGAAGAGGAGGATGAGGAAATATTAGACGACGAAGAAGAAGATGAGGGAGCGAGTCAACTCACTGAGCCACACCAACTGCAACTCACCGAGAATAATAAACACCATAAAGGTTTACAAGTGAATTCTGGAGTGGAATCCAATGAAGGAACTAAACTGAAGGTTGAGGTGTCTCAACATGAAGGTTCGGGAAGTATAGCGGTCCAGGCTGCTGAATCTCAGACACAATATCAACTTCAGCCATCCATATGCCCAACATCCTTATCTGAGCTATCACCTACTTCTGTTACAGAACCTATATCATCTGCTCCAAGTCCAACTTTAACAGGACAAAACCTGTCACTTGTAAAGGTTGATACTGCATCTGTGCCAGAAGCAAACTTGCAAAACTCTTCTGAGCTGAAAAATGTATCTGTTGTTCATATTGTGAAGACACCTGTTTCTGATGGTTACAATTGGCGGAAATATGGCCAAAAACAAGTTAAGAGTCCTAAAGGTTCTCGAAGCTACTACAAGTGCACATATTCTGATTGTTGTGCTAAAAAGATTGAATGTTCTGATCACTCAGGTCATGTTATAGAGATTGTTAATAAAGGCATGCACAGTCATGATCCACCTAGAAAGAATAACTGTGTGAGGGAAAGTGGGCTCATATCATCTGTTGGACCTGTTATAGGGAATAACATTACAGAACAGTCCCTCAGGATGCTTAACGATTCAGTTCCCATCACATCTTCAAAAGATTCTGTACGAGACTCAAATTTAGTTCCTGAAAGAAAACGGCCAAACTTAAGTAGCTTTGCTGGGGATGGCGAAGTCTCGGGTAAGGAGGAGCATCCGAGTGAACCAGAGCCAAAGCGAAGAGTGAAGAAGGGACACCTAGCAAATTCAGCCCTCTCTTTAAACAGGCAAAAACCTAAATTTGTCGTGATGCAGCAGGTGATGTGGGGATTTCAGGGGAGGGATCCGATGGGGGCAGTAGGGACGAAAATGGTGAAGGGAATCCCGATTCCAAGGACTATTAAAATGCCCTTTTGCGGGGTGCCCCGGCCCTAAGCCATTGGAGACCCTGGGGAAAACAAAAGGGGGGGTTTTTTAAACCATAAAAAGGAAAAAAGTGACACGGGAATTGCCCCCGGGCCATAAAAAGGGCCGCGGGGCCCCCCCCACGCCCCCTCTCCCCTTGGGGTGCGGGGGGGGGTGCCCCCCGTTGCTTTCTCCTTCGTAAAATAAAATTTG | |||||||||
gi|218783954|gb|FC870644.1|FC870644 KN0AAA3DD08ZM1 AbsAOv1 Citrus clementina cDNA clone KN0AAA3DD08, mRNA sequence TCTTCCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): GGGGATCACAATGAGCTTAACATTGGGTAGCCGCAAATAGGGAGTAATGGAGAGGGAGTTGAATGATATTGGGAAGGTTTTGGTATGGGTGAGTAGGGAAGATAATTTAACTAAGTAATAATAATATCACTTTTTTCATTATTACTATTTACTTAAGGAATTTGTATATCTTCCCTACTCCACCCATGCCATAGGTTTCCCATTATTCCTCCCTCTCCTTATCTCACCTCTGTTCCAAGAAGTATACTCTATATGGGTTGCTTATAATTTCATTGCCTTTGTGTTTAATTGTCTATTTTATGCTAATCATATATTTGTCTATTTGTTAATAAGGAAACATGCTTGTCTAATAAGCTTTCATACACACACACACACACACACACTAATATTTCATATATTGACACATGATTTTTCCCTCACATCCACGTTACGCACACATTTTTGTTTAAAACTTTTAACTGCGTTATTTTGATTGTACCTTTATGTATGTGTCTCATGGGATTGCCAATTAATGTTGTAGCCTTGCAGGTTTTGCTTGCTGGTTCTTTGTCCACATAAACGAACCAAAAGAAGAGAAAGAAAAAGGCTTAATTTAGCTACTAATTGGAATTTGAAGCAGAGAGTTCAGATATCAGGGTCCTGTTCCTTATAACCCACAAAATATGGTTATAAATTTATGTAGTTCAGTAAGTGTATATGTAGGATCCAACTTATGCTCTCTTAGGTTTGAGAGCACGGGTTTTACCAATTGGCTCATAGTCCATTGGTAACATTTATGTTCTCATCAAACTTGAAAATATGTGTTGGAGTCTT | |||||||||