| mature miRNA: TCTTCCCTACTCCACCCATGC species: Citrus reticulata database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188253258|gb|EY781315.1|EY781315 CR05-C1-103-077-H02-CT.F Mandarin leaf, infected with Xylella fastidiosa (stage 2 of 2) Citr TCTTCCCTACTCCACCCATGC EST sequence (targeted fragment marked with yellow): AAGCGNNGCCGGGGGGCGCCGGGCGGGGCGGNNNTTTGGGGCGGGACCAATGGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAATGTGAGGTAATAATACGCACACCTGCCGAGCACGGATCATAGATCATTCTCAGACTCCACGCTGACCGCCAACTTTTGCGCCGCCTCTTTCTCGCTGAATCCGTGAATCTCCCTCATCATGGCGACGACTCTGCAGATCTGCCGTGTTTGCGCGCGAACTGACATAGGTTCGCGGCATAATAATCGCTCCGGAGCGCTGGATCCGCCGCGCCGGAGGCCTGTGATCGGACAGTGCTCCGGTGAAAAATCGACGAGCTCGGCGGCGGCTATTGGAGCCGAATTTGACGCGAAAATGTTGCGGACTAGCTTGACCAGAACTGATAAGTACAATCGGAGAGGATTTGCCCACCAAGAAGAGAGTTTGGAGCTCATGAATCGGGAGTACGCTAGTGATATTATAAAGATCTTGAAGGAGAATGGATTGGAGTATACTTGGGGAAATGTTGAGGCGAAGCTGGGCCGAATCATATGGGCTTTTGCTGGGGGAGTTGAGCGTGCTGAGCAAATTGCTTATGAAGCAAGAATAACCGTTCCCCCGAAGGAGAAGATCCTGGATTACCACTGGAAATCGTAGCCAGGTCCCAAGTGGTTAATAAAGCGGGTTGAGAGGGAAAGGGGAACTTCAAAAAAATACCCGGGATGAAGGAAAGGCAAAGAAGCCAAGTTGGAAGGGGGGAAAAATATAGGGGGGATGGCTATTGGGCTATAGACCAACGACAATGGGAGGCTGAAGGTAGAGAAAATACTGGTGAAGACCTGGAAAAAACGACAGAAGGAGGCCCAAAGGCGTAGATGAATAACTTCGCCGCGCAGGAGGGGGTTAAAGTGTATTGGAGTTAATGGGTANAGTTGAAAGCAACAGACGGGGAGTACAAACACCGACAGATAGATGTTGAGAGGGAGAAGAATGTACATAAGAGGTAATACGTTACGCAGTGGCGCGAAGGGTATGTGCGGAGTGGGGGAGAGGAAAGGTGATG | |||||||||
gi|188299598|gb|EY763694.1|EY763694 CR05-C1-100-071-F01-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequen TCTTCCCTACTCCACCC-ATGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGGAAGAGGATCATTGCGAACAATGCTAATAATGCCAAGTTCAATTTTTTGACTAGTTCAGATCCTTATCATGCATATTACCAACATCGGCTGTCTGAATTTCGTGCGCAGAATCAATCTTCTGCCCAGAAACCTTCTTCAGAGCCCATGGATTCTGCTGCACCTGAGTCAGAGCCATCTGCGGTGGCTGCTGATGGTAGTGATGCAGCTGCAAAGACTGAGCCGGCTCTTCCATTTAAACTACCTGTACAGAAGGTCCTTGAGCCCCCTGAAGCCGAGCAGTATACCGTGCGGCTTCCCGAAGGGATTACTGGCGAAGAACTTGACATTATTAAGCTGACTGCCCAGTTTGTAGCTAGAAATGGAAAATCATTCTTGACAGGATTGACTAGTAGAGAGATAAACAATCCTCAGTTCCACTTTCTGAAACCAACGCATAGTATGTTTACTTTTTTCACTCAACTTGCAGATGCATATTCTAAAGTGTTGATGCCACCGAAGGGATTGACTGAGAAATTGAAGAATAGCGTTCTTGACATGACAACTGTGCTTGAACGGTGCTTGCATCGCCTGGAATGGGAACGTCCCCAGGAGCAGGCGAGGCGAGAAGCTGAGGACGAGATGGAGCGGGAGAGGGGGGGAATGGGCTTGGATGGATCGGCCATTAAACTCGAGTGGGTCGAGGGGATGTAGGTGTGCAGAAGAGGGGGGAGGAGAGACGGGGGGGGAGGGGCGAGAGGTGGTTGGGGGAGATTGGGGGAGGGGGGGCGTGGGGTGGAGTGGGGGAGAGGATCAGGGGTAGGAGAAGGTGAAGCACGAGAGAGAGGGAGGATAGGCGGGGGTGGGGGAGGGGTGCGAGTACA | |||||||||
gi|188324423|gb|EY793756.1|EY793756 CR05-C3-701-010-C10-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA TCTTCCCTACTCCACCCATGC EST sequence (targeted fragment marked with yellow): AGGTTTTGGTATGGGTGAGTAGGGAAGATAATTTAACTAAGTAATAATAATATCACTTTTTTCATTATTACTATTTACTTAAGGAATTTGTATATCTTCCCTACTCCACCCATGCCATAGGTTTCCCATTATTCCTCCCTCTCCTTATCTCACCTCTGTTCCAAGAAGTATACTCTATATGGGTTGCTTATAATTTCATTGCCTTTGTGTTTAATTGTCTATTTTATGCTAATCATATATTTGTCTATTTGTTAATAAGGAAACATGCTTGTCTAATAAGCTTTCATACACACACACACACACACACTAATATTTCATATATTGACACATGATTTTTCCCTCACATCCACGTTACGCACACATTTTTGTTTAAAACTTTTAACTGCGTTATTTTGATTGTACCTTTATGTATGTGTCTCATGGGATTGCCAATTAATGTTGTAGCCTTGCAGGTTTTGCTTGCTGGTTCTTTGTCCACATAAACGAACCAAAAGAAGAGAAAGAAAAAGGCTTAATTTAGCTACTAATTGGAATTTGAAGCAGAGAGTTCAGATATCAGGGTCCTGTTCCTTATAACCCACAAAATATGGTTATAAATTTATGTAGTTCAGTAAGTGTATATGTAGGAATCAACTTAATGCTCCTCTTAGGTTTGAAAAGCCGGGTTTTACCAATTGGGCTCCTAATCATTGGGAAAATTTATGTTCTCATAAAACTTGGAAAAAATGGGTGGGAAGCTTTATTAAAATCTCCTTTTCCCCCTCCCAAAAAAAAAAAAAAAAAAGGGGCCGCGCTCAAAAAGGACCCNGCTTCACTTACCCCTGGCATCCCAACCCCTAATCTTTCTTATAGGCTCCCCTCAATTCTATTTACTATCGCCCCACTTTTCACAACACAACGT | |||||||||
gi|188450193|gb|EY760971.1|EY760971 CR05-C1-100-034-C04-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequen TCTTCCCTACTCCACCCATGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCACATCACCACCCGTAAAATATCTTCTCCAAAACTCTCCCCCTCTCCCTTTACCTCTCCCTCCGGGTGCAGGATACCCCCTGTGCGCACTCCCCGTCCCTTCCCCCTCCGCGCACGTTAGCCCGCAACCCCGTAACAGCCTTAGCCTAAGCCTTCCCTTCTCTGGCTTCCGCTACCGTAGCCCCAAACTATATCTCTCTTCTCGCACCGGTGACACCACCACTCGATCCTCGACGAATAAAGCCGAGGTTAGCGGGTCGGATCCGGAATCTCCTTCGGATCCCGGGTCGGGTCTCGTCGCTGACATGGATCATCATGACAATGCTAAGGCCGTTAATGGCGGTGGGTATGGCGAGCAAACGCCGGTCACAGGAGTTCGGGGGGGCGGCCGGGTGGGAAGATGCTCACGGGGCCTAGGATCTTAAGGCTCGGGGGGGGTGGGGGGCGGGGGGGGCTCATTGGCGCGTTGGAAGTGGGAGAGGGGGGGGGGAGGGAGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGTGGAGTGGGGAAGGAGGGGGGTCGGGCGAGGGGGAGGGGGGGAGGGAGAGGTGAGGGGGGGGGGCGAAGGAGGAGGGGGGAGGGGTAGCCGTGGGGGGGAGGGGAGGGGGGGAAGGGGGGGGGGGGAGCGAGAGGGAGGGGTGGGAGTGAAGGATGGGGGGGGAGGGGGGGGAGATGGGGGAGGGGGAGAGAGGGTGCGGAGGGGCGTGGGAGAGGAGGGGGGGGGGAGGGTGAGATAGCGATGACGGGGGGGGGAGGGCGGAGAGGGA | |||||||||
gi|188445610|gb|EY803576.1|EY803576 CR05-C3-702-042-D09-CT.F Mandarin fruit, development stadium (3 of 3) Citrus reticulata cDNA TCTTCCCTACTCCACCCATGC EST sequence (targeted fragment marked with yellow): CTTAAAATTGGGTAGCCGCAAATAGGGAGTAATGGAGAGGGAGTTGAAGGATATTGGGAAGGTTTTGGTATGGGTGAGTAGGGAAGATAATTTAACTAAGTAATAATAATATCACTTTTTTCATTATTACTATTTACTTAAGGAATTTGTATATCTTCCCTACTCCACCCATGCCATAGGTTTCCCATTATTCCTCCCTCTCCTTATCTCACCTCTGTTCCAAGAAGTATACTCTATATGGGTTGCTTATAATTTCATTGCCTTTGTGTTTAATTGTCTATTTTATGCTAATCATATATTTGTCTATTTGTTAATAAAGAAACATGCTTGTCTAATAAGCTTTCATACACACACACACACACACACTAATATTTCATATATTGACACATGATTTTTCCCTCACATCCACGTTACACACACATTTTTGTTTAAAACTTTTACCTGCGTTATTTTGATTGTACCTTTATGTATGTGTCTCATGGGATTGCCAATTACTGCTCTAGCCTTGCAGGTTTTGCTTGCTGGCTCTTTGTCCACCTAAACCAACCACAAGAAGAGAAACAAAAAGGGCTTATTTAGCTACTAATTGGAATTTGAACCACAGAGCTCCCATATCACGGGCCCTGTTCCTTATCACCCCCAAAATATCGGTTATGAATTTCTGTAGCCTCCGTAGCTGTATATGGAAGGATGCCACCTCATGCCTCTCTTAAGTTCTCAAACTCACGGGTTTTCCCCATCTTGGCCCCTCAACCCACTGGAAAAGCATATTATGCACCTCATCAAAATTCCAAACACTCTTCCTCAGCAACCCTTCACTCACCAAT | |||||||||
gi|188406813|gb|EY762248.1|EY762248 CR05-C1-100-052-B01-CT.F Mandarin leaf, greenhouse plant Citrus reticulata cDNA, mRNA sequen TCTTCCCTACTCCACCCATGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCGTTTGTCCTACCGGCGAAGCAAAAACTAATCACACAGATCTCCTCTGAACGTCGCCGTTTCCAGCATCAGTTGTCAGATCCAGCTGATCTGAATCTGACAGCTGAGATCATCTACGTTGCCGCCGCCGTCTCCCGAGATATCTACTTAGCTTCGAGAGAAAATGGAGAACTTGATTTCTTTGGTTAACAAAATACAAAGAGCTTGTACGGCTCTTGGCGACCACGGTGAAGCCAGCGCATTGCCTACTCTTTGGGACTCTCTTCCTGCTATCGCCGTCGTCGGTGGCCAGAGTTCTGGAAAGTCATCAGTGTTGGAGAGTATTGTTGGCAAGGACTTTTTACCGCGTGGATCTGGTATCGTTACACGGCGTCCTCTGGTGTTGCAGCTTCATAAACTCGAAGAAGGCAGCAGAGAATATGCAGAGTTTCTTCACATTCCAAGGAGAAGATTTACCGATTTTGCTGCTGTGAGGAAAGAGATTCAGGATGAGACTGATAGAGAGACTGGTCGTACCAGACAAATCTCGAGTGTACCAGTTCGTCTCAGCGTATATTCCCCTAGTGTTGGCAGCTTGACGCTGATTGATCTTCCTGGGGCTCGAGAAGTAGCGGTTGAGGGGTCACCGAACAGTATTGTGCCGGATATGGACAATGTGGGTCGGTCGTGCGTTGGAAAAGCCCGCTGTGGTATTCTTGCGGGTCGCCGTGGGAGTCGGGATCGGGCGGGGTCTGGGTGCGGCGAAATATCTCGTGAGGGTAGACCCGAAGGGTGAGAAGAGTTGGGGCGGCTGGACGAGAATGGATCTGTGGGATAGGGGACGGGAGCGGGTGGAGTAGGGGAGGGAGAGTGTTGGGGGAT | |||||||||
gi|188380376|gb|EY800359.1|EY800359 CR05-C3-701-096-B07-CT.F Mandarin fruit, development stadium (2 of 3) Citrus reticulata cDNA TCTTCCCTACTCCACCCATGC EST sequence (targeted fragment marked with yellow): AAATTGGGTAGCCGCACCCCGTGTAGTAATGGAGAGGGAGTTGAAGGATATTGGGAAGGCTTTGGTATGGGTGAGTAGGGAAGATAATTTAACTAAGTAATAATAATATCACTTTTTTCATTATTACTATTTACTTAAGGAATTTGTATATCTTCCCTACTCCACCCATGCCATAGGTTTCCCATTATTCCTCCCTCTCCTTATCTCACCTCTGTTCCAAGAAGTATACTCTATATGGGTTGCTTATAATTTCATTGCCTTTGTGTTTAATTGTCTATTTTATGCTAATCATATATTTGTCTATTTGTTAATAAGGAAACATGCTTGTCTAATAAGCTTTCATACACACACACACACACACACTAATATTTCATATATTGACACATGATTTTTCCCTCACATCCACGTTACGCACACATTTTTGTTTAAAACTTTTAACTGCGTTATTTTGATTGTACCTTTATGTATGTGTCTCATGGGATTGCCAATTAATGTTGTAGCCTTGCAGGTTTTGCTTGCTGGTTCTTTGTCCACATAAACGAACCAAAAGAAGAGAAAGAAAAAGGCTTAATTTAGCTACTAATTGGAATTTGAAGCAGAGAGTTCAGATATCAGGGTCCTGTTCCTTTATACCCCCAAAATATGGTTATAAATTTATGTAATTCCAGAAGGGTATATGAAGGATCCCACTTATGCTCCTCTTAAGGTTTGAAACCACGGGTTTTTACCAATTGGGTCCATATCCAATTGGGAACATTTTTGTTTCTCTTCAACTTGGAAAAAAATGGGGGGGAAGCTTTTTTAAAAAATCCATTTCCCCCCTCCCATTTAAATGAGAAAAAGAAAAAGAAAGGCTTGGGGTGTT | |||||||||