miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCTTCCCTACTCCCCCCATGC
species: Citrus sinensis
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|188222456|gb|EY658324.1|EY658324 CS00-C1-100-137-A09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ

TCTTCCCTACTCCCCCCATGC
|..||||||||||||| |.|
CGGGGGGATGAGGGGGGCATG

EST sequence (targeted fragment marked with yellow):
GGGTCCGGGGCCCGGATTCCCGGGTCGACCCCGCGTCCGCCCACGCGTCCGCCTTCTTTTCCTACATTCCTCCAAACCCCACGTAAAAAAACGCTGTCGTATTTGTGAATTTGGAGAGATTATATTTCGAAGCCTGCGATGGCGGAGCACTTGGCGTCGATTTTCGGGACCGAGAAAGACAGGGTAAACTGTCCGTTTTACTTCAAGATCGGCGCGTGCAGACACGGCGACCGATGCTCGCGTCTCCACACGAAGCCGAGTGTCAGCCCCACGCTCTTGCTTTCGAACATGTATCAGCGGCTCGATATGATCACCCCCGGCGTCGACGCGCAGGGCAACCCGCTTGACCCGCGCAAGATCCAAGAACACTTTGAGGATTTTTATGAAGATTTGTTTGAGGAACTGAACAAATATGGTGAAATTGAGAGCCTGAACGTCTGTGACAACCTAGCTGATCATATGGTCGGTAATGTTTATGTGCAGTTTAGGGAGGAAGAACAAGCTGCCAGAGCACTTAAAAGTCCTAATGGGGAGATTTTATGCTGGGCGTCCAATTATTGTTGACTTCCCCCCTGGTACGGAACTTTAAAAAAACCTCCCGGTAAAACAATATGAAGGAAAAAACTTGGCAACCGGGGGGGGGAACGGGCATTTTTTTTCCCCCTAAAAAGGGATTACAGGGGATTTTGAGGCCCCCGCCTTTTGGGAAAAATATAAAAAAAAAAATAACCCCGAGCAAAAAAGCAAAAATTCCTTTACGGGGCCGCGCCCCCTGGGAAAACCGCTCCTCCCAAGGGGGAAACGGGGTAAAGGGTTGGATGAAAGGGGGTACAGATTTATTATAAGAATCGCCAAAAGCGGGGGGGCGCGGGGACACCCCACCCCCCCCAGCCCCCCCGCAAAAGAGGGGAGAAATTTAAAAAACCCCGCGGGGCGGGAGAAGGGGGCGGAATACTCCCATACCCCCCGGGGTACGGGGGGAGTAGGGGGGCGGGGTGGAGAATGGGGAGGAAAGCGATGGGACGACTGCACTAACTTTGGGTGTGTGGCATC



gi|188220383|gb|EY705769.1|EY705769 CS00-C3-701-047-G01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
.|.||||.||||||||||. |
GGGAGGGGTGAGGGGGGTGGG

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGGTAAAGTCAAGTTAGGTCTGTACTACAAGTCTTTGTGTCCATACAGTGCCAATTTCATTATCAATTACTTGGTTAAAATAATTGAAGATGTTGATCTGTTATCCCTCGTTGATCTCGGTGTGTCGCCCTGGGGGAACGCCAAAATCAGAAACTCCAAAGCCACCTTTAGTTGGGAGGATGGGGCGTTCGAAATGCTTGCTGAAACGCTGGTGGGTAGGTTGTGCCAATAAATACAGTAGACGGAATGGAGGCGGAAATTTCACGAGTGATCTAATGCATATAAAAATATTATGGGGGAGGAGAAGGGATGGTCGGTGAGGAAGGGAGGTTGGAAGAGGTTGGAGGGGGGAGGGAGAGACGGAGGGGTGGCGAGCGGGGGGGGTAGTGTCACGAGGAAAAGCGCACAGTAGCATCACGGGACGCGAAACGACCCACACATCCCGTGAGAGCTCGGAGGGGGAGCATCGAGGTGAGTACAGGTAACACCACCGCGGCCGCGTGGCGGGGGGGAGAAAGAAAGGAGAGAGGCAACAGGCACCACGAACGCCCCGCGCCCCGGCGCGAGCGGAGCGGCAACGACAAACATCAAGCGGGAGCGAAGCACGTAGGGGGAGAGAGAGAGAACAAGGAGCAGGGGGGGGGGGGGGGGGGGGAGGGGTGGGGGGAGTGGGGAGGGTATTAGGTTGGGGAAAGTAAAGAGTAAAGGAAAGATAAGTAAATAAGAAAGATATGTTGGGGAACTTAAGATGTGGTGGGGGAGGTGGTTGCTCTGCGAAATAGAGGGGTGAGCGCGCGGGAGGGGGTGGGACCGGCGGAGGACGGGAGAGGCTGTCAAGCTGAACGAGGTGGGAGGGGGCGGGAGGAAAGGTGGTCGGCGAGATGA



gi|188318926|gb|EY682473.1|EY682473 CS00-C1-650-033-C03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN

TCTTCCCTACTCCCCCCATGC
|||||||||||| ||| ||.|
AGAAGGGATGAGTGGG-TATG

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGCCCACGCGTCCGAGGGACTTGAAGGATATTGGGAAGGTTTTGGTATGGGTGAGTAGGGAAGATAATTTAACTAAGTAATAATAATATCACTTTTTTTATTATTACTATTTGCTTAAGGAATTTGTATATCTTCCCTACTCCACCCATGCAATAGGTTTCCCATTATTCCTCCCTCTCCTTATCTCACCTCAGTTCCAAGAACTATACTCTAAATGGGTTGCTTAGAATTACATTGCCGTTGTGTTGAATTATCTATTTTATGCTAATCCTATATTTGTCTATTTGTTAAAAAAGAAACATGCATGTCTAATAATCTTTCACACCCACTCTCACGCGCACGCACGCACAAATATTTCAGATATTGACACCTGATTTTTCCCTCACATCGACGTTACGCACACATTTTTTTTTGTAAGACTTTTTACTGCATTATTTTGATTGCACCTTTACGTATGTGTCCCATGGGATAGCCAATTAATGTTGTAGCCTTGCAGGATATGCTTGCTGGTTCTTTGCCAATTAATATGACTACTAATTGGAATTTGAAGCAGAAAATTTCAGAATTCGGGGTCCTGTTCCTTATACCCCACAAAAAGGGGGAAAAAATTGTGTAATTCCCTATGTTGTAAATGTACAATCCAACTTATGCACACATCGGTTTGAAAAGACCGGGTTTACCATTTGGCCCAAAACCCATGGTAACTTTTATGTTCCCAACCAACTGGAAAATAGGGGTTGGAATCTTTAAAATAAATTCAAATCCTCCCCCCCATTTAACTGAAACAAAAAAAAAACAGGGGAGGGCTGGACAAACAAGAGCAC



gi|188434731|gb|EY721853.1|EY721853 CS00-C3-703-028-G01-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
|.|||||||||||||| ..|
TGGAGGGATGAGGGGGGCGTG

EST sequence (targeted fragment marked with yellow):
TGCANGGTACNGGTCCGGAATCCCGGGNTCGACCACGCGGTCGAATGAATCAGCTGGGTTCACTCCCCCCTTGTATGCATCAGCTGGTACATATATGCGATCCGGAAATGCGTTTTACCTAGTTTTCAGCCTTCTGGTCCTGGTGTATATCCTTCACAATACAATGTGGGTGGATATGCTCTGAACTCTGCCCATTTCCCGCCATTTGTGGCTGGATATCCATCTCAAGGTCCATTTCCTATGCCGTTTGATGCTACTTCAGGCTCAAGCTTTAATATTCGAACTACTAGTGTGTCAACAGGGGGAGGGCATACCGCATATTGGGTAGTACCCAGGATCAAAAGGTGGGATGGACATGCAAGACTAATGCTAGGATCTCCCTTGGTGTGGATCCTCTTCATATGGCAATACTTGGGATATCCTGTTGGGAGATGCATGAGATGCGTGCANGTAGACATCGGTTGGGGTCTAGTGGTGGGTGAGGGGGGTCTGTGCAGAGGCGTGGGGTGAGAAAAAGACGATTGGTGGGGGTTGGTTGGGGGGGAAGGGATGGGGGGTGTTCGGTGAGTTGGGGGTATGAAGAATGTATTTGGGGCGCGCGGGAGGAAGGCCGGGGGGGGGGTGGTGGGGGAGGAGGGCCGCTGGAAGATGTTGAAGGATAGGTGGGGGGGGGAGGGCTATGGGGGGGTAAGGCGTGCGGTGGTGGCCCCGCGGGCGGGGGGTGGTGCGGGGGGAGTAGGGAGGTTTGAGAGAGATGAGAGTACGTGGAACGTCAGGAGTTAGGGGAGTTTTGTGTGGGGTTAGGGAGGTGAGGTTTCTGAGGGGGGGAGGGTGCGTGTGCGGGGGGTAAAGGGAGGGAAGTGA



gi|188263825|gb|EY679941.1|EY679941 CS00-C1-650-005-F11-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN

TCTTCCCTACTCCCCCCATGC
|||||||| |||||||||. |
AGAAGGGAGGAGGGGGGTGGG

EST sequence (targeted fragment marked with yellow):
CTTTTTGGCTAATGCTGTCATTTTATTATTCAATTTTGTTCCTTGCAAACTGATTGCTGAATAATGCTTCAATTTTTACAATGATTTCTTGTATTGATATGTTACATGTAGATTATACCTGCAGAGTTACCAATGAATTGTTATCGATTTTCGATTCTCCAATCTTGTATTTTTGTCAACCTGTAAATTTGGAGATCAGCTTTGGAATTTGGTTCACATTTTGAGTATGTTCTCCTGACTGAAGTAAGAAATTTACTTGCATTTCTAATTAAAATCCCTTGTAGTGTGGAACTTTTCGGCTAACTTGTAAATTTGAAGCAAAGAGAACATATTTCATCTTTGATTCTTTTGTACAGTCTGCGTCACTGCAGAATCTTATTGCCTTATGTTGAATTCAAGGAACAAAAATAATCATCATATCTGATTTTATAAGTTATGATTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAAAAAAGGAAAGNNANGGAAAAAAAANAAAAAGAAANAANNNAANNANAGGAAGGAANAAAGGGGGAAAAAGGGAGAAAAGGGGAAGGGGAAGGGGGAGAGGGGAGGAGAAGAGGAGGAAAAAGGGGAAAGAGGGGGGGGGGAAGAGAAGAAAAAGGAAGAGAAGGAAAAAAGAAAGGGGAGGGAAAANAGAGAAAGAAGAGGAAAAAAAAGAGAAAAAAAAATGGAAGAAAGGAGAAAAAGAAAGAAAAAAAGAAAAGGGGAAAAGGGGGAGGAAGGAGAAGAGGAGAGGGGAAAGAAAGGGGGGAGAGGGTGGGGGGAGGAGGGAAGAGGAAGGGAAAAAAG



gi|188298068|gb|EY716037.1|EY716037 CS00-C3-702-061-G01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
.|.||||.|||||||| ||.|
GGGAGGGGTGAGGGGGTTATG

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGAGAATCGTCGTCGTTTCACGGGGGAATCCCGGCCACTATGCAGACGTATCAGAAGGAGCTCAGAAGGCCGAAGACTTTACCGGATTTGCTTCAAGATCGTAGCCTTGTGTGTCTGTCACCGGAAGCGAGGCCGAAGAAGCTGACGAAGCTGTTGTTGAACGTCACGGTTCAAGGAAGCGTCGGTGCATTGCACGTGATAATGTCGCCGGAAAACACCGTCGCCGATCTTGGTGCCGCCGCCGTCGAGCAGTACATCAAGGAATGCCGCCGGCCGATCTTGCCGACCACCGATCCGTCCGGCTTCGACGTCCATTACTCTCCGTTTTGCTTGGAAAGGGGGGGGAGAGAGGAGAAGCTGAGGGGGGGGGGGGCGGGAGCGTCCTTTTTGGGCGCCCGGGGGGGGGGCGGGGGGGGCCCTCCAGAATTGCCATAGGAGGGGGAGCGGCTCGTGGTGGGGGGAAGAGGAGGAGGAAGGGCTGGGGGGGGTGGGGGGGGGGACATCAGAGTGGATGTGCACATTGGCCTTGCGGTCATAATTACAATTGAGATTGAAAGCGTTAGTGTCCCCTCTTCGGTGGTTGCCCGCCGGTATTGGGGGAGTGGGGAGGGGATGGAGGGGCGGGACTCAGGAGGGGGAGGGGGATTGTTGAGGGTGGAAGTGAGTAGTGAGGGTGAGAGAAGTGCTTTGGTTGTGCGCTGTGGTTTTGTTGTATTTGTGTCCTCGTTTGAGAATAGTGAGGATGTTGTATACCGGGTTGTCCGAGGGGGGGGGGTGGACCCCCGCGGGTAATAATACCTTATGGGAGGGGAGGGGAAGGGAGGTAATTAAAGGGTGTGGGGGGGGGAATGTGGGGGGGGAGGGTGCGCGGTGGGC



gi|188444337|gb|EY718100.1|EY718100 CS00-C3-702-090-E01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
|||.|||.||||||||| . |
AGAGGGGGTGAGGGGGGCGGG

EST sequence (targeted fragment marked with yellow):
CACGCCGTCCGCCACGCGTCCGTTAAGTTGGTGTTGGAATTTTGTTAATATAGTCTTCGTGGGTATTGAATATTTCACTGGAGTGTTACAGGTTAATTTGATTGGCAAGTTGGAGGATTGAAAAGCATCGATGGGGCTTCTTCGAAGTCTCGCGATGCTTATTTCTATGACATGGTTTTCCTTTCTTTCACTGGATGTTGTGGCTCAATCTGGCTCTGCTCCTGCTCTTGATGCCCTTCTCCAAGACTATGCTTATAGGGCTTTTGTTCGTCCCAGGACCGGTATTCCCTTTGAAGGGGTGGTTCCTTCGAATTTGACTGGGATTAAGATTGCAGCAGTGAGGCTCACGACTGGCAGCTTGAGAACGAGAGGCGTGAATATGTACAGAGAGTGTCGTATTCCCTATGGGGGTTATGGAGAGCCGGTGGGTCGAAAGGGTTGTTGGGGTGTACGCGAATGGGGGGGGTGGGGGGGGTAATGTGGTGCGGTAGGGCATACTCTTACGGGGTGCCGGTGGTGGGTCGCCGGGGTATGAGGCGGCCGATGTGTCGCCGTATAATTTGAGCTGAGATGGGATTTGACGTATCTGGTGACGCTAGTGTAATGGTGTGCTGGATGTGATGCCGGGGCGGCAGGGGTTTTGTGCCCAATTGTAGTTCGTCTGATGGGAGGGGTGGGGGGGTGCNCCCGATGTTGTTGGCAGGCGGGGTTGGATGTGTGGGGAGAAGGGGGGGAGGGCGGGGGGAGTGGGGGAGAGGAGCCAGGAAGGAGAGGAAGTGCGGAACGGGGGGGGAGAGGAGGGATCGAAAATAGGGTAGTGTAGAGCAGGGGGTTGGGGGGGGGGAGGCGAGGCCGTGGTTGGCGCTGCGGGGGGGGAGGGGGATCACGT



gi|188422819|gb|EY738950.1|EY738950 CS00-C3-705-050-C03-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
|||||||.||||| ||||..|
AGAAGGGGTGAGGAGGGTGTG

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGAATCACTATGGAATGGGGACAGCTGAGTGGAGAGCCGCAAAGAGTCCCTCATACTACAAGCGTGGGGATTATGTTCCCGGTTTGAAGGTGGATGGCATGGATGCCCTTGCTGTCAAACAAGCATGCAAGTTTGCTAAGGAGCATGCCTTAAAGAATGGACCTATGATACTTGAAATGGACACATACAGGTATCATGGTCACTCCATGTCTGACCCTGGAAGCACCTACCGTACTCGTGATGAGATCAGTGGTGTGAGACAGGAGCGTGATCCAATTGAAAGAATAAGAAGGGTAATATGAGCCCATGACCTAGCGACAGAGAAAGAGCTAGAGGACATTGGAGAAGGAAGTCAGAAAAGAAGTAGATGATGCCATTGCCAAATCCCACGAAAGTCCCATGCCGGAGCCTTCTGAGCTCTTCACAAATGTGTATGTGAAACGGTATAGAATAGAGATACTAGGATGAGAAAGGAAGGAAGGTTGAGCGGCTCGTGCAGAAGGGGGAGGTGTGGGAGGAGTGGGGAAGAGGGGGGAGCGCGAGGACCGCCGGAGGGTACGCCGGTCCGGCGGGCCGCCGGCAGGATGGGGGGGGGAGGAGGGGGAGTGGTTGCGGGGGAGGGGGAGGGGGGGGGGGGGTCGACGTAGGGGGAAATGGGGTGATCGCCGCAGGCCGGCCGCGCCCAAACCCTACACCCACCACCCCACCCCCGGCCCGCCCGCGCCGCGGGTCCCCCTCCAGGGGCAGGTGGCGGGTTGCGCCCGCGATTCCTCACAGGCAACAAAGAAAGAGGGGTCAGGGGCGCCGGTTCCCGGATATGCGG



gi|57933657|gb|CX674082.1|CX674082 UCRCS10_4A10_g Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Cit

TCTTCCCTACTCCCCCCATGC
|||| |||||||||||| | |
AGAACGGATGAGGGGGGAAGG

EST sequence (targeted fragment marked with yellow):
CCTCGTGCCGAGCACTTTCTTTGTTTCTTTGTGTTGGCAAATAACCAGAACCAGCAAGGCAAAACTTAGAAACATGACGACAGCTGCGTGTTGTTTTCGCTCCACGTCTTTACCTTCTTCATTCTCAATTCACAAAAAGCTTGCTGTCAAGAGAAACTCAAACGCAGTGTCATTCATGGGTTTGCTCTCGTTCTCGCCCAAAACCAGCTCTTTCTCCACTGGCCTTATATCAATTTCCCTCAAGCAGAGGCGTTCGAAGAACTCATTCCAAGTAAGAGCAGTGGTTGCTCCTTCGGAAGCTGTATCTGGGTTTGATGAGATGGTGGCTGGGACCCAACGGAAATATTACATGTTAGGTGGGAAGGGGGGAGTAGGCAAGACAAGTTGTGCGGCTTCACTTGCTGTAAAATTTGCAAATAATGGGCACCCCACTTTAGTGGTCTCAACTGATCCAGCACATTCCTTGAGTGATTCTTTCGCGCAGGATTTGACAGGCGGGCAACTAGTACCAGTTGAAGGGCCTGATTTTCCATTGTTTGCTCTTGAGATAAATCCTGAGAAGGCTAGGGAAGAATTTCGCAACGTAACTCAAAAAGATGGTGGAACGGGGGTTAAGGATTTCATGGATGGCATGGGTCTTGGTATGCTTGTAGAACAGTTAGGAGAATTAAAATTAGGAGAGCTATTGGACACTCCTCCTCCTGGTTTGGATGAAGCTATTGCAATTTCAAAGGTGATACAATTCCTTGAATCTCAGGAGTATAGTATGTTCACTCGAATAGTTTTTGACACTGCACCAACGGGGCATACCCT



gi|188282476|gb|EY700834.1|EY700834 CS00-C3-700-099-F04-CT.F Sweet orange fruit, development stadium (1 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
|||||||| |||||||| . |
AGAAGGGAGGAGGGGGGGGGG

EST sequence (targeted fragment marked with yellow):
GTCGGATGAGCCCAACTTCAATTCTTGATATTAGCAAGCCATTTTCAATCCTCAAGAACCCCTTTTGGTCTGAATTAACAAATAATACGCAACACTCACCCAAGACCCCAGAACCTGAGACCAGGCACAAATTGGAGTCCAAAGGAGGGATAGGTTGCCTTGGCATTGTTGATGTTCTCAAAGATGAAATTCGGGACCCCAAAAAACCAAAAACTGAAACAAGGATGGTGCTTTTTGGATCACAGCTAAAAATCCGAATCCCTCCTCTTGTTTCCTCTGTGCTTTCCCCACAAGATTCTCCTAAATCCCCAGCTGAGTTTGGTATCAAAACAAGAAACCAATTGGGTAGTTCATGTTCCTCTGTGACACCAAGCAATTCTCCTCAGGTTTTCAGGGGCTGGCTCTCGGCCACTGAGATGGAACTCTCTGAGGACTACACTTGTGTCATTTGTCATGGCCCCAATCCCAAAATCACTCATATTTTTGAGAATTGGGTTGTTGAGAGCTGCTGGGGCGTTAGCGGGTGTCTCTTCCTTGGAGGGGGGAGCGTAGGAGAGTTGATGGTTTAGGTTCTGATGGACGGGGTTGTGTGGCGCGTTCGTGGAGCTTTTCTTCGGCTTGTGTGACCCATGGGGCCGGAAGAAGGTGGGGCCCGGGGCAAGGGACCTTTCACTTTTTCCTTGTGGAATAAGGGCCGTGTTTTCCGCCGGGGAGGTGTGGGGGTTTGGGGGGGGTTGGTGTTTGTGGGAAAAGGTGGGGGGGGGGGAGGAGGGAAGAAGGAGAGGCGGGTGAAGGGGACGGGACGGTGACGGACCGAGATCGCGAGGCGGGCCGGGATAGCACGGGAGGGGGAGTGGGGGGTGCCGGGGGGGGGGGTGCGGNGGTGGGAGGGGGGAAGGGGGTAGGCGAGGGGTGCCGCGCACCCGGGGGGCCCCCCTGGGTGCTGGGT



gi|68274205|gb|DR405238.1|DR405238 CSAB-PNP1240N08 Developing fruit albedo at 165 DAFB Citrus sinensis cDNA clone CSAB-PNP1240N0

TCTTCCCTACTCCCCCCATGC
|||| |||||||||||| | |
AGAACGGATGAGGGGGGAAAG

EST sequence (targeted fragment marked with yellow):
GGGGATCACAACGGAACTCCAGAAGCACTTTCTTTGTTTCTTTGTGTTGGCAAATAACCAGAACCAAGCAAGGCTAAACTTAGAAACATGACGACAGCTGCGTGTTGTTTTCGCTCCACGTCTTTACCTTCTTCATTCTCAATTCACAAAAAGTTTGCTGTCAAGAGAAACTCAAACGCAGTGTCATTCATGGGTTTGCTCTCGTTCTCGCCCAAAACCAGCTCTTTCTCCACTGGCCTTATCTCAATTTCCCTCAAGCAGAGGCGTTCGAAGGACTCATTCCAAGTAAGAGCAGTTGCTGCTCCTTCGGAAGCTGTATCTGGGTTTGATGAGATGGTGGCTGGGACCCAACGGAAATATTACATGTTAGGTGGGAAAGGGGGGAGTAGGCAAGACAAGTTGTGCGGCNNNNCTTGCTGTAAAATTTGCAAATAATGGGCACCCCACTTTAGTGGTCTCAACTGATCCAGCACACTCCTTGAGTGATTCTTTCGCGCAGGATTTGACAGGCGGGCAACTAGTACCAGTTGAAGGGCCTGATTTTCCATTGTTTGCTCTTGAGATAAATCCTGAGAAGGCTAGGGAAGAATTTCGCAACGTAACTCAAAAAGATGGTGGAACGGGGGTTAAGGATTTCATGGATGGCATGGGTCTTGGTATGCTTGTAGAACAGTTAGG



gi|188370625|gb|EY672414.1|EY672414 CS00-C1-102-109-H03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2)

TCTTCCCTACTCCCCCCATGC
|||||||||||| ||| ||.|
AGAAGGGATGAGTGGG-TATG

EST sequence (targeted fragment marked with yellow):
CGCAAATGGGGAGTAATGGAGAGGGAGTTGAAGGATATTGGGAAGGTTTTGGTATGGGTGAGTAGGGAAGATACTTTAACTAACTAATAATAATATCACTTTTTTTATTATTACTATTTGCTTAAGGAATTTGCATATCTTCCCTACTCCCCCCATGCCATACGCTTCCCATTATTCCTCCCTCTCCTTACCCCACATCTGTTCCCAACAAGCATACTCTAAATAGCTCCCTTATAATTTAAATTGCCTTCCTCCTAAAGACTCTATTTTACCCAACTCAACCCCCTCCCTAGTTGATACATGCAGAACAATAAACGCCCCATACCCAAGACCCGACAAACAAACCAGAACAGCCCCACTGATCACAACCACATTGACCCATCACCCTCTCCAAGAAGAAGAAGAAACCAACACCTCAAACTAAACAAACATTAACAACAGAACATGCTACATGCAAACAACTCAACCCGCCAAGAGCAAACACCACCACCCCGCGACCCAGTCAAAGCAAAAACCCCAACCACCAACACCAAAAGGAGCAACAACCGAAACGAAACCCAAAACAAAAACACCAACACAAAAAAACAAACAAACAAGCCCCGCACAACCGACACCCCCCACCACCACAACCCCGCCCACCCACACACACACCCCCACACCAACACCAACCACAAAACACCACAAACAACACAAAGCCCCCACAGACCAGCACAAAACACCAACACCCACAACAAACCCCAAAGCACACACAACCCCCCGCCACCCCCCGCACACCAACCCCAACTGCCAGAAACACCCAACACACAACACCGAACACAACAGAACAAGACAACCCT



gi|188388161|gb|EY741508.1|EY741508 CS00-C3-705-085-G01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
||.||||||||||||||. |
CGAGGGGATGAGGGGGGTGGG

EST sequence (targeted fragment marked with yellow):
TTCGTCGATCAGCGCCACTTCGGCGCGCAGGTGGCCGTCCACTTCCATGAAGCGCTCGACCGCACCGCGCTGCTCACCTTCCACCAGCACCTTGACGGTGCCATCAGGCAGCTTGAGCAGTTGCAGGACCGTTGCAACGGTACCAACGCGATACAGGGCGTCTTCGCCCGGATCATCGTCAGCAGGATTTCTTTGGGCCAACAGCAGGATCTGCTTGTCGCCCGTGATCGCGGCCTCGAGGGCTTCGATAGACTTCTCGCGCCCCACGAACAGCGGGATAACCATGTGCGGATAGACGACGACATCACGCAACGGCAGGAGAGGCAATGCGATGGTGGTCTTCATGATTTCGCCTCTATGACAGATGAAAGTGAGCTTGAAACTCACATGGGGGCTGCCGGGGGAGAGAACAAGCGTTATGGGCGTCAGTTAAACGCAGTAAAAACAAAGGGGGCGGTCAGGGGCCCTGTATGTTGTACAGGGCGGGGGCGCGCGCTTACCCGTCAGGCGCGACTTGGCACCGGGTCAGTGGGTGCGGGATAACGGGGGCGTGGCTGGCTTTTACCAGACTGCGGCGTTGCCTTGTGGGGAGGGGGATCCCGGCCCCGCGCTGGGGACGGAAGCCGTCCATCGCGGGATGGTGCCGNCGGCCGTGGGTGGGGGGAGTAGGGGAGCTCCGGCTCGGCGGCGCCGGGTTACGCGGGGCCGCCCGCCACGCTCCCGACGGGGGGGGAGTGGGAGGGAGAGGTGTGTGTGGTTGTGCGGGGGAGGGGTGGGGCTAGGGGAGGGGGTGGCGGGCGGGCGAGGGGGGGGGGCGGGGCTGGGAGGGGAGGGGGGTCTGGCGGGGGGTGGGCGGGGAGGGTGGTGGGTG



gi|188371112|gb|EY657459.1|EY657459 CS00-C1-100-093-C02-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ

TCTTCCCTACTCCCCCCATGC
|||||||| |||||||| . |
AGAAGGGAGGAGGGGGGGGGG

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGAGCAAATGGAATAATGTTGTTGTGCAGCAGCTGCAGCGGTAACCTTCTGAGTTCAATTGTTTCTCCAAAATTAAGACAACGCCTAATCAGAGTCTCTGAGTCTCAGCTTCATCATCATCAGCAGCATAAAATCAAAATGGAAAGAAAAGAGAGCGGTAATGATAGTGATGCTTTCGGTTTCAAATTCCTCACCAAAACCTCATACGCTCCTCCTTCTTGGGCTTCTCATCTCGCCCCCATCCCTTCTCACGTCTTCTCTCTCGGCCACTTTCCAACTCCAATTCACAAATGGAACCTCCCTAATTTGCCCCATAATACTGAGGTCTGGCTCAAGCGTGATGACCTTTCCGGCATGCAATTGAGTGGAAACAAGGTAAAGGAAAATTAGAGTTTTTGAATGGCAGATGCAATGGGCTCAAGGGTGCTGGATGGGCATCATCCACCTTTGGGAGGGCATTCCAAAGGCAATCCATTTGGCGTGGCTTGCTGCCGTTTGCGGCCCAAGTATCCTCAATCCTTGAATTGGTAACCTTATTCCTTCGTAACCTCTAAAGGGGTTCGGGGGGGAACCAAAAATCCCGGGGTTTGATCGGGAAAACCTAAAAAAGTTGAAAACGTTTTAGATTGGGACCACATATATGAACTTTTTTCCTTAAAAAGAAAAAAGATATTCAAAAAAATTTGGGGAGGGGGGGGGACCTTTAAACAAATTTTTTTAAAAAAAAGAAAGTTGGGCATAAAGGGAGGGGGGGGAAAAAAAAACCCAATGATTTTATCTCCGGGGGGGGGGGGGGATCAAAACACACACAAAGAGGGGAAAGGGGGGGGGGTAATATTGTGAGACCACAGAATAAAGGGGGGGAGGAGGAGAGGACCCGCACCCCACTTCCGGAAGAGGGGGGGGGGGGGAGGAGGGAAGAGGGGGAAGAAAGAAATCATGGTAATAGGGGGAACATGGGGGTAGAGGATTGGGAAGATGAAATTTGAGGGAGCGAAGAAGAGAATGGACG



gi|188349488|gb|EY715555.1|EY715555 CS00-C3-702-055-H04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
||||| |||||||||| || |
AGAAGTGATGAGGGGGATAAG

EST sequence (targeted fragment marked with yellow):
CCACGCGTCCGCTGCTTCTGAAACCGTTGGATCAAAGCGTCAGCGAAGGCCAAGCGTTAGATTAGGTGACATTGGCGGCGACCACCACCACCAGCAGCCATACGAATCGCACGTGCGGAGAATCACCAGCACCACCACCTCTAACGCCGCGGCCAAGCAATTCAGGAGCCACCACTACGTGGCGAATGTTTTCGATCACAAAAAGGACGCTAGTAAGTCGTCAAAGGTTCGAGCTTTAACTAATCTGAACTCTAATTCTGGAGAATTGAACGAAACCCTAGATGAGAATCTCGATAGTATCGCGATTGGGAGCTGGAAAGTGAAGGATTCGAAGAAGAGGGGATCTACTAAAAGGGCCAGGACTAATTGGGTATCCAAAAATAACGAAACCGGTGGAGAGAACAATAACAAAAACGACGACGTTAACAACAGCAACAATTTTGAAGTTGCAGACTATGAAGAAGATTTGGAAGATGGGTATCGCGAATTTAATATGGAAAATTCGGAGAGTCCTTTGAAAGAGCAGAGCCCGCTTCATTCTCTTGACAATTTAGCTGTTGATGGCCATGGAAGGGANGAATTTTATTGCAATAGAAGGGGACCCATTAGAGGAAGTAGGGACCACAATGATGGAATGGAGTTATCTGGGCCGTCNGATAAATGATGCAGGGAGTGGAATAGGGGGAGTAGTGAAGATGGGGTAAGAATTTGGTTGAATAGTTTGGGGGTAGGGAGATATGCGCCAATTTTTGGAGTACATGAGGTGGATGATGAGGGGTTGGCAATGTTGACATTAAAGGATTTGAAGGAATGGGGATAAATGCATGGGGGCCAAGGAGAAATATTACTGCCCGATAAAAAACTTGGGAAAGGTTTTCTTGAGGTTTTGGTCTGGGGGGTGGGGAATTTAAGGAAA



gi|55933885|gb|CV885513.1|CV885513 UCRCS04_2_016B03_T3 Ruby Orange Developing Flower cDNA Library UCRCS04-UCR Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
||||||| ||||| ||||| |
AGAAGGGCTGAGGTGGGTAAG

EST sequence (targeted fragment marked with yellow):
CTTACAGTCAATTCACATGTCAAATCCTACTTAATCTGCGGCAATAAAATGAGCTTAGCCAGAAATTCTGCCGTTTTCAAAATTTTTAAAACACCTCTTGCTGACTTTACTGATTAGAAAGAAATAAGCATCTCCCATATGCAGCCTAGCTCTTCTGTATTCTGAATTTCTCGTCCTACGAGACCATTATGGACAGTTTGATCAACCCAATCATGGACTATCTTGTATGTCCATTGTGTGGTGTGATCAGCAAACATTGTGGTTACGTCTGTGGTCTTACGGACAGTCTCAACTCTTTGAGAGAAGCAGGGCGTGATCTCGTAAACATCACCAGAGATGTGGAAGCAAGGGTTGATCTAGCGGTGGAGCAGCGTTTGAGGCCTACACACGAAGTGAATGGCTGGCTGGAAAGCGCGAAAATCATGCTCCGAGAAGTGGATTACATTTTACACAGAGGTGATGAAGAGATCCAGAAAACTTGTTTGAGGAAAACATGTTTTCCCGGAAGCTGGTCCTCCAGAGACAAGTTGGGAAAAGAAGCCAGTGAGAAGATTGTTGCTGTGGAAGAGTTAATAGGTCGAGGGCATTTTGCTGTTGTTGCTGAAAAGCCACCACGAGCTCCCGTGGAGGAGAGGCCAATAGGGAAGACTGTTGGCTTGGACTCCATTATCAGTGAAGTTTGGAGATGCATTGAAGATCATAATGAGAAGGTGATCGGGTTGTACGGAATGGGTGGAGTCGGGAAGACCACCCTTCTAAAGAAGCTTAACAATAAGTTTCGAGATACAGAGCACGATTTTGATTTGGTGATTTGGGTTAAGGTGTCCAGAGATGCCAACTTGGAGAAAATCCAAGAAAGTATACTCAGAAGATTCGAGATCCCGG



gi|188396851|gb|EY691643.1|EY691643 CS00-C2-003-104-D05-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequ

TCTTCCCTACTCCCCCCATGC
|||||||||||| ||| ||.|
AGAAGGGATGAGTGGG-TATG

EST sequence (targeted fragment marked with yellow):
TGGAGAGGGAGTTGAAGGATATTGGGAAGGTTTTGGTATGGGTGAGTAGGGAAGATAATTTAACTAAGTAATAATAATATCACTTTTTTCATTATTACTATTTACTTAAGGAATTTGTATATCTTCCCTACTCCACCCATGCCATAGGTTTCCCATTATTCCTCCCTCTCCTTATCTCACCTCTGTTCCAAGAAGTATACTCTATATGGGTTGCTTATAATTTCATTGCCTTTGTGTTTAATTGTCTATTTTATGCTAATCATATATTTGTCTATTTGTTAATAAGGAAACATGCTTGTCTAATAAGCTTTCATACACACACACACACACACACACTAATATTTCATATATTGACACATGATTTTTCCCTCACATCCACGTTACGCACACATTTTTGTTTAAAACTTTTAACTGCGTTATTTTGATTGTACCTTTATGTATGTGTCTCATGGGATTGCCAATTAATGTTGTACCCTTGCAGGTTTTGCTTGCTGGTTCTTTGTCCACATAAACGAACCAAAAGAACAGAAAGAAAAAGGCTTAATTTAGCTACTAATTGGAATTTGAAGCAGAGAGTTCAGATAATCCGGGTCCCTGTTCCTTATAACCCCACAAAATTATGGGGTATACTTTACTGCCTCCAGTGAACGGAGCTGGCCGAATCACCTCACGCTCCCTTAAGTCTGAAACCCCAGGCTTCACCCCCTCGAATCATAACCCCTCGGTCAACCTCTACCCCCTCTCATACTAAGCAAATCTGCACCAGGCACGCATCACAACACACAATCCTCCACCTTCCTCATGCCTATCCACCAGTCCAATAACTACACCAGAGCTGGCCTCCGGTCTTACTCTGGTTGCCCGCGTCACGACTCGACCGCCTAATGCTTGCATTATCTACAGCTTATGTTCCAATCCCCCGCTACATCGCTGCCACTACACCCCATGTGCACAACAGATCGCCGCAGCTCTTCGTCCCTCTTGT



gi|188390823|gb|EY741549.1|EY741549 CS00-C3-705-086-C02-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD

TCTTCCCTACTCCCCCCATGC
.|.||||.||||||||| ..|
GGGAGGGGTGAGGGGGGGGTG

EST sequence (targeted fragment marked with yellow):
CCCCCCCCCCCCCCCCCCCCCCCCGCCGGCCCCCGGGGGGTAACGCGGTATCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGCGTCCGGGTGGTGTCATGTGGATGCAGGGAAAGGAAACCCGGTGGTGGCACCCATGTGAATGTTGGGCGTAAGGGCGTTGGTGTAAACACTGGAAAGCCTGACAAAAGAACCAGTGTTGGTGTTGGCAAAGGAGGAGTATCCGTAAGTACAGGACACAAGGGAAAGCCACTTTATGTTGGAGTAAGCCCATTCAACTATGTATATGCTGCAAATGAGAACCAACTCCATGATGACCCGAATACAGCTCTTTTCTTCTTGGAAAAGGACTTGCATCCTGGCATGAAGATGAACTTGCACTTCACTCAAACTTCAAATGGAGCAACTTTCTTATCTCGCCAAGCTGCCAAATCAACTCCTTTCTCGTCTGACAAATTGCCTGAGATCTTTAACCAGTTTGCCCTGAAACCTGGATCAGGTGAAGCTGAAATAATGGAGAACAGCATCCAAGAGTGTGAACACCCTGGCCATTTAAAGGACACCACAAATATGGTGGCGCTTCACGGGACTCAGTGATTGGACTCCAGGCCTGCTGAGCGTGGGAAAGAGTGGGGGGGGAGTGGGGAGGGAGGTTTGAAAAGGAGCCACGATGCCGATTGATGCCACTAGGGGGGCCATGAGACGAAATGGATGTGAAAAGTGAGATGGCGGCCCGCCCGCCCGGCCCTCGTCCCCGACGTCCCTTCCTCGGCGCCGGGGGGGGGGAGCGGGGGGCGTTGGCGGGGCGGCCGTGGAGGGGGGGGGGTGGGGGCCGGGCGGGGGGGCAGGTGTCGGGGGTCCGCGCCCGCAGGTTCGTCGCACACTCCCACGCCGCCGGCCCCGGCCACCCACCCCGTCCGCCACCTACCCCGCCCCGCCCCTCCCTCGACCGCGCCCTT