| mature miRNA: TCTTCCCTACTCCGCCCAT species: Juglans hindsii x Juglans regia database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|133864864|gb|EL896303.1|EL896303 CGF2003867_B04 WLO-02: Walnut leaf Juglans hindsii x Juglans regia cDNA clone WLO-02-9_I_B0 TCTTCCCTACTCCGCCCAT EST sequence (targeted fragment marked with yellow): GGCCGAGTTNATGGATACCTTTCGTATTCATTTTAATGTTAAGTCCTCCAATTACTACTGTGCCTTGTTGAAACTCTGCAGCGAATCCCGAAACCAAATCCAAGCGAAGAAGCTCCATTGCCACATAGTCAAAACGTTGACAGACGTAGAAACCTTCCTATCAAACAATCTCATCAATACCTACAGCAAACTAGGCAACATAAAATATGCGCGCCGCATGTTCGATCAAATTCCTCACCCCAACCACTTCTCTTGGAACACCATCTTATCTGCTTATTCGAAACAAGGTCATCTCTTGGAAATGCAATTGATCTTTGATCGAATGCCAGCAAAAGATGGGATTTCGTGGAATTCTCTTATTTCTGGGTACGCGTCTCATGGTTCACTTGTTGAGTCGGTGAAGGTTTATAAGCTGATGTTTAAGAAAGGGCCCACTAATTTGAATCGGATTACATTTTCGACAATGCTCATACTGTCCTCGAATCAGGGATGTGTTGAGTTGGGTTCGCAGGTTCACGGACATATAGTGAAATTTGGTTTCCAGTCATATCAATTTGTGGGTAGTCCTTTAGTGGACATGTACTCGAAAATGGGGCTTATTTATGATGCTAAGCGGGTTTTTGATGAGATGCCTGAGAAGAACGTGGTTATGCATAATACCATGATCACAGGGCTTTTGCGACATGGGATAGTTGAAGATGCAAGGCGTTTGTTTCAGGGTATGCATGAAAGAGATTCAGTTTCATGGACAACAATGATAGGAGGACTAGCACAAAATGGGTGGAGTAGAGAAGCAGTAGAGGTTTTAAGAGAAATG | |||||||||
gi|133868554|gb|EL899993.1|EL899993 WRO-PSAB-aaa03g12_b1 WRO-01: Walnut root Juglans hindsii x Juglans regia cDNA clone WRO-PSA TCTTCCCTACTCCGCCCAT EST sequence (targeted fragment marked with yellow): AAGTTGATTATTGAGAAGTATAGCAGCATGGACGAGATTTTAAGGGAATGTAATAGCATGGCCGGGCATCTTGATGTGTGGAAGTTCCTAGACGATGCGCACGACTTGGTGGTGACACTCCATGACAAGATTGAGACATCCTTCTGATGGCTGCGAAGTTTTTCTTTTATCCATGATCTTCCTAGGATCTTGGTGATTCTTTACAGGATCGCAAATATTTGTAGGCACTGCATGAAACAAGCACCTGAGGTGCCATATGTGGTCCGAGTAGGGAAGTTACATTGCTTGTTCTGCTACTGCTCACCATTTTCTCTATAACGAAGGTCCTAGGAAAAGATATCACGACAGCCAACAGGCAGGCAGGCAGGGGCCTGTATTGTCAATCAGTATACTATATTGGATGAGGAATATCGAAGGGTCCCTTCTATTATTATTATTATTATTATTAGG | |||||||||
gi|133861114|gb|EL892553.1|EL892553 CGF2003505_C02 WLN-02: walnut leaf from plants infected with Pratylenchus vulnus Juglans hi TCTTCCCTACTCCGCCCAT EST sequence (targeted fragment marked with yellow): AGCAGTTAAAATTTCTTTGACGCTAGCAATGGGGTGAGAGTCTGACGCAGAGAGACATTTGAAAGAGCTTTGTAGTTTGTACAGAGAGGATGAGAATGGTCAAATATGACCGGTGGCGCCGGTCAATGGTTGATTAAACTCCTCTTTAAAACTCTCTGTCTCTCTGTCTCTGTCTCTCTCTCTCTCTCTCCATTTTTCTCTCTGGGTCAGCTTGGTTGTCTGAATAACTGCGGTGGGTTTGATCCTAGCAGTTGAATCTCTTGAAAAATCTTGTTTTTTTCATTTTCAAGCTCCGTGGACAGGGCAATGGCTCAACGTTCACATGTACCGAAATTTGGCAATTGGGAAAGTGAAGAGAATGTTCCTTACACGGCCTATTTTGATAAAGCTCGCAAGGGTCGAGGTGGGACCAAGATGATGAATCCAAATGACCCTGAAGAGAATCCTGATTTAGTTTCTGATAATTCATCTTCAGCTCATGGTCCTGCTGCCAGAGCTGAAACCGAGGAACCAGTAAGAGAGGGAGCTGGAAGATCAGCACATGAACGGCGGAGCAGGGAAGAAGGTGATGTCAGGCAGCAGAGCTCATGGAGGCCGTGAAACCCATAGAAGACCTGCAAGGCCCAGCACTGGATCTGAGTACAGTGTTGAGCGTTCACCACTCCACGGCCAATCAAAGGTCCCAGTGAGAGATGGTGGGGTCAATTCATACACTTCAGAAGGAAAGTCATATGATAGTAGCCATGGTACTCCTGGAAGATACCGAAAACCAGAGACTCGAGGCGATGAAACGCCTGAAAAAGGTGCTGCTGTTCCAAAATTTGGTGAGTGGGATGAGAACAACCCTGCATCAGCTGGTTTTACTCACA | |||||||||