| mature miRNA: TCTTCCCTACTCCTCCCATT species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225917797|gb|GO369849.1|GO369849 GQ04004.B7P1_M09 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ04 TCTTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): TTGAGATAAGTTTTGTCGCGGCAGCACCAGAGTGGAAAACCTCAGGTCGTGGGGATCGTGGGGTTGGGCGGAGTTGGGAAGACAACGGTAGCAAACAAATTCTTCCATAAAGAGAGTCCATCTTACCTTAACTCCTGCTTTTTCACTGTGAATCAAAATGCAGGTAGCAGCTCTTTACATTCTTTGTTCGGAGAAGTTTTAAAGCGATTGACTCGCTCGGATGTGCAAATAAACAGCGTTGGTGAAGTGAAAAAATTGTTTGAAGAGTATGAACCCTCGTTAGAAATGATTCAAAAGTTTTCCTCATTAGTAATTTTAGATGGAATAGATGATTTTGATCAGTGGAATGCACTCTTGCCAATCCAAGACGTTCTTCATTCCGATAGTTTAATATTGATTACATCTCGGAACAGAAATGTTCTTACAGGCTCAGGAGTTGAAGCAGCATCGATTTATCAGTTAAATGGCCTTAATACACAGTATTCCCGAAAGCTTTTTTGCTTCCATGCCTTCCACACAGCATCTCCGCTGCAAGGATATCAATGCTTAGTGGATGAATTTTTAACTGTCTGCGAGGGATTGCCGTTATTATTGAAAGTTATTGGGGCATCTTTTTATAAAAAAGACATATCTGATTGGGAAGGTCAATTGTACAGGTTTCAACCAATACTTCCCCATGAGACACAAAAAAAACTTAAATTTAGTTACGATGCACTCAATATAGAGGAAAAAAATATATTCTTGGATATTGCCAGTTCTTTCATTGGAGAAACGACTGATGCTGCTATAATACAATGGCGAGGACCAGGCTGGGGAGGTTTGCCCGGGTTTCAAAGTCTACTGGAAAAACGTCTAGTGGAGGTGGATAGTAAAATTGTATAAATATGCATGACCATCT | |||||||||
gi|211898588|gb|DV975176.2|DV975176 GQ0068.TB_N22 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ0068_N22 TCTTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): TGTTTTTGGCGCAAAGATGTTTGCACTGGGAGTAGTAGTGAAGGTGCCAGTTCCAAAGCAAACGGCAAAGACGAATTTCCAGGTGACAACAGGTCGAGCCAAGTATAATGCAGCTATTGACTGCTTGGTTTGGAAGATAAGAAAATTTNCAGGGCAGACAGAATCAACAATGAGTGCAGAAGTTGAACTGATTTCTACGATGGTGGAGAAGAAGGCCTGGACTCGGCCTCCGATTCAAATGGAGTTTCAGGTTCCCATGTTCACGGCATCAGGTCTACGGGTCCGATTTTTGAAGGTTTGGGAAAAAAGTGGTTACAATACAGTTGAGTGGGTTCGCTATATCACAAGAGCTGGTTCATATGAGATTCGTTGTTAGGAGAAATTTTTAACCATTCTGGAACATTTTTCTTATTTAATTGTGCTAAGCCTATTTTCTAATTTCTGGGGAAGTTTTATGAGATGTTTGTTTGTTTGATTTGGATGGATAATATGCATATTGTCAGAGTGGATTTTTCAATATTTGAGTACGTCATCTAATGTGGATATTCTATTTGGGAGGCATTCTCTTGACGTTATGTTTTGAGAAGCAATTCTTTGAATGAAGCATGCCTGTCATATTCCCTGGAGCTGTAAACTGCAACTGCAATTGCGAAATCTGATGTGGGATGGCAGCTTCTTAAATTTCAGTGGTGTGGCCTCTCCTGGCCAACAAGTGTATCAGGAATTTGTATCATTTTTTCTTTAAAAGCAATGCTTTTGTTATTTTCATTTAGCTGTTTAAACAGCTAGTCTGTCACAAGGTGCTTTCAAGTTTCAAGTAGTTCATTTTTTTACCTACGTTGCCTTGTTACAATGGAAAAAACACTGAGCTACTGCTGTACTGCCGCTATTTGCAAGAAATGTTGGACTATTTTGTATGGGCCAACTCCTTGTGAAAAGAAACTCGGACTGACCACATAGTGATGGGCCAATATCAAAAT | |||||||||
gi|211890476|gb|DV977101.2|DV977101 GQ0068.B3_N22 GQ006: Cambium and phloem from mature trees Picea glauca cDNA clone GQ0068_N22 TCTTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): ATGAAGTATCGTATTACTGAGGGTGTTAACCTTCCGTTTCGGGTTCTTCCAAGTATTAAAGAACTTGGCCGGACACGCATGGAAGTAAATGTAAAGGTGAAGAGTGTTTTTGGCGCAAAGATGTTTGCACTGGGAGTAGTAGTGAAGGTGCCAGTTCCAAAGCAAACGGCAAAGACGAATTTCCAGGTGACAACAGGTCGAGCCAAGTATAATGCAGCTATTGACTGCTTGGTTTGGAAGATAAGAAAATTTCCAGGGCAGACAGAATCAACAATGAGTGCAGAAGTTGAACTGATTTCTACGATGGTGGAGAAGAAGGCCTGGACTCGGCCTCCGATTCAAATGGAGTTTCAGGTTCCCATGTTCACGGCATCAGGTCTACGGGTCCGATTTTTGAAGGTTTGGGAAAAAAGTGGTTACAATACAGTTGAGTGGGTTCGCTATATCACAAGAGCTGGTTCATATGAGATTCGTTGTTAGGAGAAATTTTTAACCATTCTGGAACATTTTTCTTATTTAATTGTGCTAAGCCTATTTTCTAATTTCTGGGGAAGTTTTATGAGATGTTTGTTTGTTTGATTTGGATGGATAATATGCATATTGTCAGAGTGGATTTTTCAATATTTGAGTACGTCATCTAATGTGGATATTCTATTTGGGAGGCATTCTCTTGACGTTATGTTTTGAGAAGCAATTCTTTGAATGAAGCATGCCTGTCATATTCCCTGGAGCTGTAAACTGCAACTGCAATTGCGAAATCTGATGTGGGATGGCAGCTTCTTAAATTTCAGTGGTGTGGCCTCTCCTG | |||||||||
gi|257196078|gb|GT052631.1|GT052631 GQ04109.B7P2_K22 GQ041 - Shoot tip - Dormant (Normalized) Picea glauca cDNA clone GQ04109_K2 TCTTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): AAAGGAATATAAGCTGAACATATAAATATCTAAGGGCAAACCTGTGCCATGCGAGCAGATCTGAACAGCAACAGAATTACAAGTGCAGATAAAATAGGGATGTGTAGTGAAGGCAATAGGTCTAGGTGGAGTTGGAAAAACTGTAACAATGCCTATATCACATCAGATCAGATGAGATCACGAGTGACTGCATGAGTTTTTCCTCTCCTCCCAGACCCAGTGGCCTTAAAACTACATGACATCCCTGTAATACCTACAGGACATAATCTCCATATTCTTCATAGACTTTCTACTGTGTTGCGTTGGGAAGGGAACTGTGATGAAGGCAACAGGAATGGGAGGAGTAGGGAAGACTGGTGAGATTAGAGCAAAGAATTATTGAAGCAGACTCACTTAACCGCAGTCTTACCCTATCCTTCCACTCCTCCAAACTTCATCCATACACATCCCTTTCTCACAACCAACGGCCTTCCCTTCATTCA | |||||||||
gi|225911749|gb|GO360075.1|GO360075 GQ02819.B7.r_H20 GQ028 - Cambium / phloem scrappings (Normalized library ) Picea glauca cDNA TCTTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): ATGTAACCCTGATGCTCAGCTATGTTCCACACTGTGAAAAACGCGATGACTGTTGGGCTGTTTTGCCGTCTATGAACTTGAGGAAGCGGAGATGTTTTGTCTGTGGAAGCATTGGGAAATACATTTATGTTGCCGGGGGCCTGACGAACGAGAGGCTGGAGGGCCCTTTTTTGGGTTTGGGAAAAAAGAGCGCCGAGAGATTCGATACCGAGATCAACAAATGGGAAATTTTACCCGATTTGAACAGAGAGAGGGTTAATGCCATAGGGTTTGTGTTGAATGGGAAGTTTTGTGTGATGGGAGGAGTTGGGAAGGGGTCGAGGACGTCTAGTGAGTTTTATGATCCGGAGGCGAGGGAGTGGGTTTTGGTGCCCAAAATGTGGCCGAAGCCGACTTACTTGTCCTATTTTATGCGGGATGTTGTGGTGGTGGAGAATAGGGCTTATGCAAAGAGGTTAAATTCTGAGCAGACCGTGTTTTCGCTGAGTGTGTGGGAGTATTGCCAGGAGCGTAACCGATGGTTAGATTTGGGTGTTGTGGTTCGGCATATTTCGAAGCTCGTTCTGTGTGATTATAGGTTGGTGTGTGTTGGCGACGAGCTTTGGGTTGTGGGAATGAAGCCGGAAGCAGAACCAGGTTTCAATGTGTTGGTGTGCAGGCCCGGCACGCGGTTGGAGAGGGAAGAGGGGCTTAGATGGAGGAGGTTGGAATTGGGATGGGACAAGTACTTTGTTCTGTTGCTCTCTTGCTTAGCTTTCTAGTAGGAAAGATGAAATTTCTGTTTCAGGTGCCTGCCTGATCTATTTAAATGCTATTTGGGTATATCTAATTCGG | |||||||||
gi|211889805|gb|DV974538.2|DV974538 GQ00410.TB_E05 GQ004: Non-lignified secondary xylem from mature trees Picea glauca cDNA clon TCTTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GCACTGGGAGTAGTAGTGAAGGTGCCAGTTCCAAAGCAAACGGCAAAGACGAATTTCCAGGTGACAACAGGTCGAGCCAAGTATAATGCAGCTATTGACTGCTTGGTTTGGAAGATAAGAAAATTTCCAGGGCAGACAGAATCAACAATGAGTGCAGAAGTTGAACTGATTTCTACGATGGTGGAGAAGAAGGCCTGGACTCGGCCTCCGATTCAAATGGAGTTTCAGGTTCCCATGTTCACGGCATCAGGTCTACGGGTCCGATTTTTGAAGGTTTGGGAAAAAAGTGGTTACAATACAGTTGAGTGGGTTCGCTATATCACAAGAGCTGGTTCATATGAGATTCGTTGTTAGGAGAAATTTTTAACCATTCTGGAACATTTTTCTTATTTAATTGTGCTAAGCCTATTTTCTAATTTCTGGGGAAGTTTTATGAGATGTTTGTTTGTTTGATTTGGATGGATAATATGCATATTGTCAGAGTGGATTTTTCAATATTTGAGTACGTCATCTAATGTGGATATTCTATTTGGGAGGCATTCTCTTGACGTTATGTTTTGAGAAGCAATTCTTTGAATGAAGCATGCCTGTCATATTCCCTGGAGCTGTAAACTGCAACTGCAATTGCGAAATTTGATGTGGGATGGCAGCTTCTTAAATTTCAGTGGTGTGGCCTCTCCTGGCCAACAAGTGTATCAGGAAT | |||||||||
gi|211864338|gb|CO486216.2|CO486216 GQ02014.TB_F21 GQ020: Clean ROOTS systems -Diurnal cycle Picea glauca cDNA clone GQ02014_F21 TCTTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): AAATTCAAAACATGGGTTCTGTGCAGCGCCTTGATTTCTGAAGTGGATGGTGTAGCCGATGGGCGACTTTTCGACAGAATGAAAGAAACTATCATTCAGAGCAATCCTCCGCCATCAAGCACCCCATTGAAACCAAGAAGACGGTGGTCTTCTCCTGTTAATGAGGGGAGAGAAGAGTTGCCATTGACTGAGAGGAAAAGAGCACTGTTTGAACCTCTGGATCCAATAAGACGCCATGATAATAATAATCTACTTCCTCCACCTGACTTTGACGCTGCCACCTATCCGAGCGGATGGGTTGTGGGCAAGAAGAGAAAGCTTGTTAATGTGGACGTGGTAGAGAGCATGCGACGCATTGCTGTCCATGAGATGAACAGGAAGGACCAGGAAATAGATGGTTTGAATGAGCAGCTTGAAGAGGACGCTCGATGCCTTGAGCGTCTTCAGTTGCAACTTCAGCAAGAACGAAGCAAACGAATGGAATTAGAGAGGGAGAACACTGTATTACAAGATCGGATAGGGATGCTGAGCGAAATGCTCGAGGAAAATGAGGATGCAGAAACTGTGGATGGTGCGGCTTTTTCACCAAGCAATCTGTAACAAACTTTTTCTAGGCTTTTCATGTAAAAATAGAAGTGATTCTGCTCCATTATTTTTACAAAGTGCCATCCTTGATGAACAACATCACATTCTGCTAGGGTCCCATGGTAGCATGCAAGAGTCTATTGAAGGTGGACAAAGCTGTTAGTTTCAGTATGTGTAATTAGGTGGAGGGATTTTGTGATTTATCTCGTTGGTGAAGAAGTGAGAGTAGTAGGTAAGATATTGGTATGCCCCTAAAACCAATTAATTATAATAATTTGATCAGGACCTTAAAAGGAGGTATATAAAGGCTTGAACCATCAGAACTCCCAACCATTGTAAAATATGCACCAATCACGATTGTA | |||||||||
gi|225920080|gb|GO368075.1|GO368075 GQ03808.B7P1_O20 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03808_O20 5', mRNA s TCTTCCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GCCTAGTTTACAAAAAGAATGAGGTTTTTCTTGATATTGTGGAAAGTGTAAATCTCTTGATGTCTTCAAAGGGAGTGTTCTTCGATGTGATGTTACCGGGAAGATCCTTATGAAATGTTTTCTCTCAGGCATGCCTGACTTGAAGTTGGGATTAAATGATAAGATAGGGCTTGAAAAGGAATCACAGATTAAAGCCCGTCCTACAAAAAGTGGGAAAACAATTGAGCTTGATGATGTCACTTTTCATCAGTGTGTAAACTTGACACGTTTCAATTCTGAGAAGACAGTCAGTTTTGTGCCACCCGATGGAGAATTTGAACTGATGAAGTATCGTATTACTGAGGGTGTTAACCTTCCGTTTCGGGTTCTTCCAAGTATTAAAGAACTTGGCCGGACACGCATGGAAGTAAATGTAAAGGTGAAGAGTGTTTTTGGTGCAAAGATGTTTGCACTGGGAGTAGTAGTGAAGGTGCCAGTTCCAAAGCAAACGGCAAAGACGAATTTCCAGGTGACAACAGGTCGAGCCAAGTATAATGCAGCTATTGACTGCTTGGTTTGGAAGATAAGAAAATTTCCAGGGCAGACAGAATCAACAATGAGTGCAGAAGTTGAACTGATTTCTACGATGGTGGAGAAGAAGGCCTGGACTCGGCCTCCGATTCAAATGGAGTTTCAGGTTCCCATGTTCACGGCATCAGGTCTACGGGTCCGATTTTTGAAGGTTTGGGAAAAAAGTGGTTACAATACAGTTGAGTGGGTTCGCTATGTCACAAGAGCTGGTTCATATGAGATTCGTTGTTAGGAGAAATTTTTAACCATTCTGGAACATTTTTCTTATTTAATTGTGCTAAGCCTATTTTCCAATTTCTGGGGAAGTTTTATGAGATGTTTGTTTGTTTGATTTGGATGGATAATATGCATATTGTCAGAGTGGATTTTTCAATATTTGAGTACGTCATC | |||||||||