| mature miRNA: TCTTCCCTATGCCTCCCATTC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|188451991|gb|EY677497.1|EY677497 CS00-C1-401-038-D08-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA se TCTTCCCTATGCCTCCCATTC EST sequence (targeted fragment marked with yellow): ATCCTCTCTATTTTTCCTCCTTGAATCCCTCCTCCTCTTGGGAGGCATCATCCAAGACCACGGCGTTTCGGGTAATTGATTCGTGAAAACGGAAAAAAAATGAACCGCTGCGCCGCTATGGGATTGGGAGGAGGCTGTGATGAAGAGAGGAGGATGGGTTCAATGATTTGCCCTAAGCCAAGGAGATTAGGCCTCATAAATCCTCCGATTAACGATTCCATTAGACCTTTGAAAAGGCCAGCTAGTGAGTTTGGAGATTCAAAAGCTGGGACTGAACTTCTGGATTTAATTCTCACCAAGGGAGGCTACGGTACAGAAAAGACTGGCAACCAAGTGGCTTCGTCGCCACCGTATTTCTCCGGATCTCCGCCATCAAGGGCTTCAAATCCTCTAATACAGGATGCCCAATTCGGCAATGAGAAGTTAGCCCCGCTCACTGCAGCACCGCCATCTCCGTCCTCGCGGATGGCAGGCGGCGGATGCGTGAGGGTGAAATTCGGGCACAAGCCTGCTGCGGTGAAAATTGAAGGGGTTGATTGTCTCAGCCGAAATCCCCCCAATTGCAGCATCTCTGCTGTGGCTTTAACCAAACAATAATCCCAGGCGTTCACATAACAAACCCAATTTTTAACCCAAAAAAAAATTTTTGATTGGAGAAAAAAAAGGACCAACACCTAAAATTGGTACTAGTCCCAACTTTTATTGTAAAATACCAAGGTCCCCACGGGGGGGGTTGGGGTGGGGGGGGGGGGGGGATTGGGGTTTAAAATTTTTTTCTTTTTTTTGGGGGGGCCCCCCCCCAAAATAAAAATATGGGGGGCATAGGGAAAAGAGGAGGGGGGGGGGTTTATTAATGGAGAAAGAGTGTATATTTTTTTGAAAACAAAAATAAAAAAGTGGGGGGGGAGAAAAAAAAAAA | |||||||||
gi|188425686|gb|EY713693.1|EY713693 CS00-C3-702-033-H01-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD TCTTCCCTATGCCTCCCATTC EST sequence (targeted fragment marked with yellow): TTCCGACCCACGCGTCCGTTCCATGCTGGTGGACAGCGCCAACTTTATGGTTTCATGGCACTGAAAGAAGACTTGGATGTCTTCAACCAGCATTGCCACGGTAAAACAAAGCAGAAATTTGAGATGAGATCATACCACGAGATGGTTGTGAATCAGATCAGGCAAATGAGCGAGGATAATCAACAGCTCATATATTTGAAGAATAGGGTTGTGAAAGAACAAAGGCACTCAAAAGCTCTTGAAGCAACTTTTAGTATTGTGAGTGAGAAGCTGCGTGAAACCATGGAGGAAAACCGCATTGTGAAACAGAGGACCAAAATGCAACATGAGCAGAACAAAGAAGAGATGGATTTTCAAGAGCAACTCTTCAAGGACCAGATTAGAATAATTCATGAAGCAAGGGATGAAAAGGAAGAGAATTTTGAGAAGCTGCAACAACAGGAACGAGAGAAGGTGAAGCAATCAATTGCTAATCCTAAAAACACTGAGGACTACAAGCTCAGGGCAGAGGAAATTGCCAAGTTCATAACGGTTCAAGACAAAGAAATGGAAGAGTTTGTGGCAGCAANGGACCGGCTGATAAAATTCACGGTGAGAAGATGGATGCAATGAGGCGGAGGCATTGGGAAGAAGAGTTTGAACTTGAGAAAGGATTGATGCTGAGTTGACTCCATTGATGGAGGAGGACTCTACTCATATAACAGAGGTTGCCGCTGACAGTGTTTGATGCTGAGATGCAGGAAATGTAAAAAATAACATACTAACTTGATGAGCAGCATAAAATTTGATCCTACAATCCTGAGAATATTTAGGACTTCTTTTGAATAATTCTCCGTAAGACTTTTCTTTTGAATATTTCTCCAATTACAACCTCAAAAAGGTTTACCTTTGGATTTGCAATTTGAAAATGACCGCCATTTTTTTTGGTGGTTTAGGAAAAAANCTCNAAAAAAAAAGAAA | |||||||||
gi|188433950|gb|EY653205.1|EY653205 CS00-C1-100-041-G05-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ TCTTCCCTATGCCTCCCATTC EST sequence (targeted fragment marked with yellow): TTCGTCGACCACGCGTCCGCCGGCTTCAAGTGCCTGAAAATTTTACGTGAGAAATCAGGGGTTGATTAGAGGCACGACGAGAACTGATTGGTCAACGATACCATCAATTGAATTGAAATCGCCGGTAACTAACTCTCCACTGCACACACGGAAAGAAGTTTAAAAAAAAATAAAAGGGAAAAAGAAACAGAAAATGGCATCAACTGAGGGTCTGGTGCCGATTACCAGGAACTTTTTGGCATCTTATTACGACAAGTACCCCGCTCCTCCTCTCTCCGATGACGTGTCTCGCCTTTCCTCTCAGATTCGTTCTCTCGCCAATGATCTTCTCCTGGATTCTCCTCCCTCTCAAGAGGAGAGCTTATTGATAGAGGAAGCTGATCGCCAACCTCCCCATAAAATTGATGAGAACATGTGGAAGAATCGGGAGCATATGGAAGAGATTATTTTTTTACTCAAAAGATCACATTGGCCAGCTACGCTACAACAGTCGTCCGCTCCTGAGGATGTTGAATTAGCCAATGTCTTAGGGAAGCTAAGTGAGAAATTTGAAAAGACTTTAAACACATTGAAGTCTTTCCAAGCTGTAAATTCTGACCGCATATTTAACACAGTTATGACCTACATGCCCTCAGATTTTCGAGGAGCACTGATCAGGCAACAAAGAGAGCGATCGGAGAGGAATAAAGCAGCTGAGGGTGATGCTTTGGTCAATTCTGGTGCAAGTATACGTGATCGATATTCTCTAATGTGGAAANCACAAATGGATANGNNAGAGCAGTTAGCTCACCTTGGATCNGCTACAGTGTCTACAAAACACTTGTAAATACTTGGTANNGAGTCGCAGGCCTACTGGATNNTTGTCGCAATAAATGATGATGATGGGCCATGGAAGAGCACGACATCGTATGGACCCCCTTAATAACTAACGGAATGGGATCTTATCAAC | |||||||||
gi|188372858|gb|EY739695.1|EY739695 CS00-C3-705-060-H12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD TCTTCCCTATGCCTCCCATTC EST sequence (targeted fragment marked with yellow): CACGCGTCCGATCACGCCAATTACTCCGTAATCTTCGAGAAGCTAAGAACCCTTGAACGAAGGGAGACGACGATGGACGCAGCAAAAGTGAAAGAACTGAAACAGTTCATCGNATCAGTGCAATCCAACCCTTCCGTTCTCGCCGACCCNTCCCTCTCCTTCTTCCGCGACTATCTCGAAAGTCTCCATGCGAAAGTGCCTCCCGATGCGTACAAAGAAGGGCAATCCGAACCGAGGGCCTCTGTGGGTGAAGAGAGCGANNAGGGAAACCAAGGGGTTNAAGTTGAAGAAAAGGAGGAGGAGAGGATGAAATAGTCAAATCCCATTTTGGACCTGTAAAGGAATATTGTGGGAGGCGGGTTTGAATCCTCCCCCAAGAATGGGGAAAATTTCGGGCAAAATTTTTGGGTTAAAAACCCCAAACCGGGTTGGGGGGCAAAGGGAAGGGCCTGGAACCCCTTCTTTAAAGGAAATTTGGGAAGGGCATTGGCCTTTCCCGGAGGGGTTTTTCGGAATCCCCCCCCCCTTTTTTTTCCCTCAAACCCCTGTGTTTCTTCCATGAAAAACCCTCTTTTTTCCCCCCCGGATGTCCCCTCCCTTTTTAAAATTTCCCCCAATTTGCTAGGGGGGTCCAAAACCCGGGGTGGGGCGAATGAATTTGGGGCCCGGGGAGAGGGGGGGGCGGGATGTTTCGTGTGTGCCCGGAAAGATTTTTGTGGGAGAGAAGAGGGCGGGGGTTATTAAAAGGGTGCGCCCCCCCGCCGGGGAGGGTTGAAACACCCCCCGG | |||||||||
gi|56586155|gb|CX072165.1|CX072165 UCRCS08_26D09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis TCTTCCCTATGCCTCCCATTC EST sequence (targeted fragment marked with yellow): TTTTTTTTCACCCATCTTAATAATTTTAGTGTTTCATATATGAAGATGCCACAACCACAAACATGAAAAGAAAAATTGTGATCAGCACAACATCACTCCGTTCATCACTTAATGCAAATTCATCATAACTTTTGAAGGAATGAAAAATGAATCCTAGAAAAGTAAATCGAGCTCATTTGAAATGATAAAAAACATAGCCATCAGTCGTCATCCTCACCAGCCGTCTAAAAATAGTACCATGCGTAGAATTTGGTACACAAAATGAAACACCAAAAGGGACTTGTATCAAGATCTTTTTGCATCTGAAACAAAAGCTTGAAACCTGAGCAGTCTTTTAAGGTAATAAAATTAAAAAATAAACAACAATTTGCCTTACCAGAACAGAAAAAACTTTAGACGTTAGCAGGGCAGTATAGCTATTTGAATAAGAAGACTAATGAACAAACATAAAAATAACAAGAAAAATACAAGTGCAAACTATAAACAAAAATCTAATAAAATATCGAAAAGAAGAGCTTTAAAAATTTAAAGATATAACGAAAACAAAAGTGAAGTGAAGTGAAGTGAAGCGAAGCATGGAAAGAAGTCGATCGAAATGGGACGGATGATGTAGCTATACTATAAAGAGATAGAAAAGAGAAGGAGGAAGTGAAGGAAATCAAAGGAATGGGTGGCATAGGTAAGAAAGAAAGTATATATTTTCTTTTTCTCGTTCTCTTGCCCATGCACCCATTCCCGAAATTTCCCCTCTTCTTCTTCTCTGTTTTCTCTTTCCGTCTTCTTTGGGGTTCACAGCCAATG | |||||||||
gi|188446441|gb|EY679069.1|EY679069 CS00-C1-401-054-G12-CT.F Sweet orange leaf, infected with CiLV Citrus sinensis cDNA, mRNA se TCTTCCCTATGCCTCCCATTC EST sequence (targeted fragment marked with yellow): CGGCGGGGTCCGGGTCGGGATTCCCGGGTCGACCCCGCGTCCGAGAGAACAGAAAATGGCATCAACTGAGGGTCTGGTGCCGATTACCAGGAATTTTTTGGCATCTTATTACGACAAGTACCCCGCTCCTCCTCTCTCCGATGACGTGTCTCGCCTTTCCTCTCAGATTCGTTCTCTTGCCAATGATCTTCTCCTGGATTCTCCTCCCTCTCAAGAGGAGAGCTTATTGATAGAGGAAGCTGATCGCCAACCTCCCCATAAAATTGATGAGAACATGTGGAAGAATCGGGAGCATATGGAAGAGACTATTTTTTTACTCGAAAGATCACATTGGCCAGCTACGCTACAACAGTCGTCCGCTCCTGAGGATGTTGAATTAGCCAATGTCTTAGGGAAGCTAAGTGAGAAATTTGAAAAGACTTTAAACACATTGAAGTCTTTCCAAGCTGTAAATTCTGACCGCATATTTAACACAGTTATGACCTACATGCCTCAAGATTTTCGAGGAGCACTGATCAGGCAACAAAGAGAGCGATCGGAGAGGAATAAGCCAGCTGAGGTTGATGCTTTGGTCATTTCTGGGGGAAGTATACCTGATCGATTATTCTCTAATGTGGAAACCAACAATGGGATAAGAAGGAGGCAGTTTAGCTCCACTGGGATCGGGTACCGGGGGGCCACAAAAAACTTGGAAAGGTCTTTGGGTAGGAGTTCCCGCCGGGCTTAATTGGATTTTTGGTTCCTCCAAAATAAGGATGAATGAAGGGGCCCCTGGAAGAAAACACGGGGCCTCGTTTTTTGGACCCCCTTTTTATAAAATATAAAGGGGAAAGGGGGGAGATTTTTTTTCAACATTCTTTTTTTTTTTTATTTCCTGGGGGGGGGAGGTTTGGAGGTCTAA | |||||||||