| mature miRNA: TCTTCCCTATGCCTCCCATTCC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|56586155|gb|CX072165.1|CX072165 UCRCS08_26D09_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis TCTTCCCTATGCCTCCCATTCC EST sequence (targeted fragment marked with yellow): TTTTTTTTCACCCATCTTAATAATTTTAGTGTTTCATATATGAAGATGCCACAACCACAAACATGAAAAGAAAAATTGTGATCAGCACAACATCACTCCGTTCATCACTTAATGCAAATTCATCATAACTTTTGAAGGAATGAAAAATGAATCCTAGAAAAGTAAATCGAGCTCATTTGAAATGATAAAAAACATAGCCATCAGTCGTCATCCTCACCAGCCGTCTAAAAATAGTACCATGCGTAGAATTTGGTACACAAAATGAAACACCAAAAGGGACTTGTATCAAGATCTTTTTGCATCTGAAACAAAAGCTTGAAACCTGAGCAGTCTTTTAAGGTAATAAAATTAAAAAATAAACAACAATTTGCCTTACCAGAACAGAAAAAACTTTAGACGTTAGCAGGGCAGTATAGCTATTTGAATAAGAAGACTAATGAACAAACATAAAAATAACAAGAAAAATACAAGTGCAAACTATAAACAAAAATCTAATAAAATATCGAAAAGAAGAGCTTTAAAAATTTAAAGATATAACGAAAACAAAAGTGAAGTGAAGTGAAGTGAAGCGAAGCATGGAAAGAAGTCGATCGAAATGGGACGGATGATGTAGCTATACTATAAAGAGATAGAAAAGAGAAGGAGGAAGTGAAGGAAATCAAAGGAATGGGTGGCATAGGTAAGAAAGAAAGTATATATTTTCTTTTTCTCGTTCTCTTGCCCATGCACCCATTCCCGAAATTTCCCCTCTTCTTCTTCTCTGTTTTCTCTTTCCGTCTTCTTTGGGGTTCACAGCCAATG | |||||||||
gi|188372858|gb|EY739695.1|EY739695 CS00-C3-705-060-H12-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cD TCTTCCCTATGCCTCCCATTCC EST sequence (targeted fragment marked with yellow): CACGCGTCCGATCACGCCAATTACTCCGTAATCTTCGAGAAGCTAAGAACCCTTGAACGAAGGGAGACGACGATGGACGCAGCAAAAGTGAAAGAACTGAAACAGTTCATCGNATCAGTGCAATCCAACCCTTCCGTTCTCGCCGACCCNTCCCTCTCCTTCTTCCGCGACTATCTCGAAAGTCTCCATGCGAAAGTGCCTCCCGATGCGTACAAAGAAGGGCAATCCGAACCGAGGGCCTCTGTGGGTGAAGAGAGCGANNAGGGAAACCAAGGGGTTNAAGTTGAAGAAAAGGAGGAGGAGAGGATGAAATAGTCAAATCCCATTTTGGACCTGTAAAGGAATATTGTGGGAGGCGGGTTTGAATCCTCCCCCAAGAATGGGGAAAATTTCGGGCAAAATTTTTGGGTTAAAAACCCCAAACCGGGTTGGGGGGCAAAGGGAAGGGCCTGGAACCCCTTCTTTAAAGGAAATTTGGGAAGGGCATTGGCCTTTCCCGGAGGGGTTTTTCGGAATCCCCCCCCCCTTTTTTTTCCCTCAAACCCCTGTGTTTCTTCCATGAAAAACCCTCTTTTTTCCCCCCCGGATGTCCCCTCCCTTTTTAAAATTTCCCCCAATTTGCTAGGGGGGTCCAAAACCCGGGGTGGGGCGAATGAATTTGGGGCCCGGGGAGAGGGGGGGGCGGGATGTTTCGTGTGTGCCCGGAAAGATTTTTGTGGGAGAGAAGAGGGCGGGGGTTATTAAAAGGGTGCGCCCCCCCGCCGGGGAGGGTTGAAACACCCCCCGG | |||||||||