| mature miRNA: TCTTCCCTATTCCTCCCATT species: Picea sitchensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|49043734|gb|CO221419.1|CO221419 WS01012.B21_N21 SS-R-N-A-11 Picea sitchensis cDNA clone WS01012_N21 3', mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): GTGCGCTTGTTTTCTTCAGTTCTTGTTTGCTACACGTCTCGATCTTGTGATCGGACTTGCGTTCTTCGTGCGGGGAGGAAGGATAGATCTCCTGGCGAGCTTGGTGATTTTTTGTTTTGCGATAATAGGGGACGAGGAGAGGGGATCTGAGGAATAGGGATGAGATGGCAGTGCTGTTGAGGCAGAAAACGGGCAAAGGAGTTGCGGTGCTTTGGTGCATAACTGGACTGGCTGGGCCCCTTTGTTGTATACTCGCCGCATCTCGGACGGCTTGAGAATATCGAGGGATGGATTCTTTTGCCCTTTTTTCTTCGATGGCGTGGATATGGGGGTGGTTTGCTTGTTACTGTGGGGAGATGAGTGAGTTGGAGGAGAGACAGTAGAGAGTTGAATAAAGACCGTTAAAGATACAGAAAAAAAAAAAAAAAAAA | |||||||||
gi|148812534|gb|ES663456.1|ES663456 WS03921.C21_B23 SS-B-24 Picea sitchensis cDNA clone WS03921_B23 3', mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTGTAGAGAAACTTCTGAATCAAATTAAGTAGTAGCTAACGTTACAGAGGAAACTTCAAACTTCATCAATCTCTCACTTGGGGGGAAGGGATGAAGAAGTGGTGGAGGAAGAAGACTTGAAGGAATTGGAAGAAGAGAATGGGGAAGCAGTCTTGATGGAATTAGATGGGGAGAATGGGGAAGCAGTCTTGAAGGAACTAGACGGAGAGAATGAGGAAGTAGTGGGGGAAGAAGAATTGAAGGAGTTGGAAGGAGAGAAGACTGGGAATTGGGCTTGCCTAGGGCTTGTAAAGGATGGATAATCAGTATATCCTTTCACCTGTTCGGAACTGTAAAACGTGGAGCGGTCGTATTTGCTGAGCTTAAGTTGCATGGCAAAGCGCCTAGGGAGATCGGGATTTGATATAAACAGACGGCCAAAGGATATCATGTCTGCTTTGCCACTTCGAATTGCAGCAATGGCGGTGTCCTTGTTGAATCCCCCGCTACTCATGAAGACGCCCTTGAAGATTTTCCTGAGCATGCCGCACAGTTTTCTCTTCTTTGTTTTCTCGTCCTCGTCTTCGGCTTCGTCCTCCTCTTTGAGGCCTTCGCGGGTGAAGCGAGGCTCTGTTATGTGCAAGTAGGCGAGGGGTTCCTTCAGATGGTTGAGTTGTTCTACCAAGTAAACCCCAAGGGCCACCGGGTTCGAATCTGTTGCGCCCATGTGGTCTATGATGGGGGACAGCCTTATCGCCGTCCTGCTTCCACCGATTTCTTCGATCACGGCTTCCAGGATTTCGAGGGCGAATCGGCATCTGTTTTCGATCGAGCCCCCATATTCG | |||||||||
gi|166900588|gb|FD733348.1|FD733348 WS03820.C21_E11 SS-B-23 Picea sitchensis cDNA clone WS03820_E11 3', mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGCACACAAAAGAGCAACCATTAAAAATGAAATCGAAATCGCCAGAGACATTCTCGTCTGGCTGAACTTGATATCTGCTATTAGTAATGTCAACAGCTTAATATGATATGTTGAGACCTTAGCATAAAGGTTCTTACAACATATATGGAGATACTCTATAATCCTCTCTAAACAGTCATTCCTACTTCCAACCTATTCATACAATCTATCAATTGATTTCTCTCCAGTAATTACATGGTACTTTGAGAAAGAAAACACAGAACTAATGCTTGTTCTAACATCCAAGCCATACATACACCCACATCCAGATCTTGGTCACAGGAATAATAAGATCCATGTCCCCTGTGCCATGTGAGCAGATCTGGAGAGTAACGGCGCCAGAGTTAACAGAGCGGGCAAAATAGGAATGTGTAGTGAAGAAGGCCATGGGTTTCGGTGAAGTTGGGAAAACTGTTACAGTATATCAGATCGTAATTTACTGCGTGGGTCTTTCCAAGCCACAGAGACCATATGGCCTTAAAACTACAGGACATCCCTTTAATACCCGCAAAACAGGATGATCATTTCTCCATATTCATTTCTTCAATTGTACTGTGTTACATTGTGAAGGGATGTGTGATGGAGGCAATAGGAATGGGAGGAATAGGGAAGACTAATCAGGTTTCAACTGAGAATTAAGCAAACAGCCTTCTCCTATCCTCCCAATCCTCAACCTCGTGC | |||||||||
gi|149967508|gb|ES867533.1|ES867533 WS02799.CR_E02 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02799_E02 3', mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TGGTGGGACAACAGGAATATTAAGAGGAACCCAAGGGCTCCTGATTTCAAGCACAAGGATACAGGTGAAGCATTGTGGATTGGTAGTAGATATAATCCATTGTGGGTCAAGTCCCAGTTAGATGTATTGGATTCCAGAATGAAGGATTTGGGGGAATGGGGAGGAGGAAGATCTTCTACAAGGTCTCGGGGATCATTATCATCATTCCAGGATAGTGATTTCTAGGATATTTACCATCATTCCAGGATAGTGATTTCTATGATGTATGTTTCCCAGGACAAACGTTTCAAGTTTTCTGGGGACATCTTAATTGACAGGGAAAGAAGATTTATTGCTGGCTATAATACGTTGAATAATCTGTCTATTTTGTTGGTTGTATTTGAATATGCTTATTTGTGCATAACTTTGGTGGTAATTATCTAAAAACCCATTTTCCGTCATCAACTTGTCTTGTCATTTGCTGGAAATAGTTGACAATTGCTAAATTCTTCACTTGATCGTAGAGCATGAAACATTTTATATGATATTTTGTAATGTACCTAGGGAGGTACCCAAGAGGGATAATGAATGTAATGTGGCCATAATCACAGAATAGACCCACTTGGAAGTTGGTGTGTAATAATAGGCCCACTAGGTAGTTAAAGGACCTCCATGCAATCCTTTGAATTATTTTAATCCAAAATGTATGTACATTGAAAACATACAAAATAAACATG | |||||||||
gi|149957306|gb|ES857335.1|ES857335 WS02771.CR_I15 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02771_I15 3', mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): AAGACCTCTTTTTTTTTTTTTTTTGGATAAATGGAAGTATCTCATATTTCAATAAGTTTGTGATTCAGGAAAAACCTCCAAACACTTTAATATCAATAGTGGCAATGCCAGTTAGAGGAATTGGGAAGATATCAAAATGAGAACCAACAAGACATTTATCATGATAATGTATACTATTATACTTCTAGTCAATTAACAAGATAAAATAATGAGAAAATCTTGTCAAACCATAATATATCCCTAACGTTGAAAGCTTTTATCCTTTATGGTCGCGGTGTCTAATTCTTCTTAATGGAATAGGTCATATAATCTAAACAAATGACTTCCCGAAATTAGGTCTCCATGGGGGCTGCAGCTTGATCTGTATCATCTTGCACAGCACCCTGTTCACCTTCAACTGGAGCCACGTCTACTGGAGGTTCGTCTGCCCTATCTTCCAGTGAGTCAATAATCTGCTGTACTGTTTTGGAGTCAAGAGTGTTGAATGCCTCGCCAATTCCAACAACAGCTACATTGCAATTAGAACCATTAAGTTTTCCTTCCGCCAATGCTTCCTTGACTGAAATAATCCCATGACGAATAAGTTCATTGCGTGAGCACTCTGGGAATGTCTCAAACTTCCTTTCCAAATAAGTTTTTGCTGCTTGGGAGCGAGCACCAATGGCAAATGCTTGATACTCAAAATAATTTCCAGAAGGGCAATTCTGATAAAGATGGGGTCCTGTTTCATCTAATCCAGCCACAAGTAGACCCACGCCATATGGTCGTGTCCAAGACCGCTGTGTGCAGACCTGGGCCTTGTCTGCCAGCTGCACCACCAATCGGCC | |||||||||
gi|149962168|gb|ES862196.1|ES862196 WS02786.CR_K22 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02786_K22 3', mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TCCCCCCCCCCCCCCCCCCGATTGACTATTCACTACGGATTGCATCCTGCTCTCGACGAGTTTCGAACCTCAGACCTTTGGGACGGGTATGGCTCAAGCCCTATATAATCACCGGGCGAGACTTTGCTGAAATAAATTGCTTAGCGTATTTTTTGGCTATCATTGTAAGCAGCGATGAAGCTGACGAGGGTTTGAACGCTTATTGCATTTTTTTGCAATTCTCGGATCGATTATTCGGACAATCGTATCGACCTAAACAAGCTAAGCCATCTGATAAGATCCGTGCATCTGCGGAAGATTCAAATCTTTTGCTTCCATGGGTTTTGACGAGGATCGTTATGATGAAGAGGGAGAGCCAATTATGGACCCAGATATGCAATCAGATAGAGAAGTGTCTCCGGAGCCAGCAGATGAGGATTGGCATCAGGAGCGATCCCCTTCTCCTGCATTGGATTCAGCAGAAGAAGACGCTCCCAAAGCTAAGCCAAGAAAAAGGCTTATAAAAAAGAGTGCACATGAAAGCTCTCCTGATGAGCAGGAGCAGTCTAATAAGAGGAAAAATAAGGATAAGGATGGAGCCAGTGGTCAGCCTCGGAAAAAAAGGAAATCTAAGGAGGAGGAAAAGGGAAGAGAAAAGAAGTCAAAATCCAAGTCGGGATTTTA | |||||||||
gi|292505588|gb|GW723920.1|GW723920 WS02925.C21_B22 SS-IB-A-FL-15 Picea sitchensis cDNA clone WS02925_B22 5', mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TTAATTAAATTAATCCCCCCCCCCCCCCGAAGCAAATGTGTCGATGGGCTCAGCCGGTTTCTGTTGCTAGAGCTTACAGATGACAAGATGCAGCTGATGGGTATATATCATTGGCCCCAAAAGCACTAGATCTGGCCTGATTTGTAGTGGGGATAGCTTGTCAAGGTTCAGTTGGTGAAAATGGCGGTCGGTAAGCATGGTCGTCAGGATAAACAGGCATCATCGTCACTGTGTTTTAGAGGGACAGTGGTTATTTTTGTTGGGGTTTGTATTCTTGCTGTATGGATGATGAACTCATCTTCACCTGTGCCAGCAGAAAGACAAAGCTTCAATGGCATTAGGAAAATCAGTCCAGAGAGCCGGGGGAAACCGAGTGATTCTTCTCCCGGGTCTCAAGAGACAAGGGAGAAGACGAAAGATTCTTCTGCGGTGTCTTTTGAAGACAGCCCTGGAGATCTGCCAGAGGATGCCATCAAAGGGGATGATGGGGAGGAGCTTGAGAAGATAAAGAACCCTGAGATCCAGCAGAAGACCCAACAAGATAAAACATCTGATGATGGGGCTGCTAATTCAAATGAGGAGAATAAGGAAGATGAGAACTCTGATGGTGCTGGGAAATCGATCGAAGAAAATATATCAGATGGGGATGGGAATTCAAATGAAGAAGAAAAATCAGATGGGGATGTGAAACCAAAAGAGGAGAAGTCGGATGAAAATCAAAATGAAGGAAAAAAAAAAAAAAAAGAGCTCTT | |||||||||
gi|149962189|gb|ES862217.1|ES862217 WS02786.CR_L21 SS-IL-A-FL-14 Picea sitchensis cDNA clone WS02786_L21 3', mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): ACGCGTTGATGCTACTAACATTAAAGAAAGCGTGGAAAAGAGCTTAAAGCGTCTTGGCACAGATTACATTGACTTGCTACAAATCCATTGGCCTGATCGTTATGTGCCACTTTTTGGCGAGTTCTCATATGATCCTTCAAAGTGGAGGGAGAGCGTGCCATTTATTGAGCAATTGAAGGCATTTCAAGAGGTTATTCAAGAAGGAAAGGTACGGTATATTGGTGTTTCTAATGAAACATCTTATGGAGTTATGGAGTTTGTTAATGCTGCAAAGCTGGAAGGTTTACCAAAGATCATCAGTATACAAAACAGTTACAGTTTGCTAGTACGGTGTCATTTTGAAGTTGATCTGATGGAGGTGTGCATGCCTCAAAATTCTAATGTTGGTCTATTGGCATATTCTCCATTGGCTGGTGGGGCTTTGACTGGGAAGTATACAAATCCTGATTATATAGCAGCAAAGAAAGGGAGGTTTAATCTCTTTCCAGGATACATGAGTCGCTATAATAGTTCTTTGGCTAAGGAAGCTACTGAAAAGTATATTCAATTGGCATATCAACATGACCTTACCCCTGTTCAAATTGCACTTGGTTTCATACGTGATCGCCCATTTGTGACAAGCACAATTATTGGTGCAACATCCATGGAGCAGCTTAAGGAAAATATTTCTGCTTTCACTGCAACCAGGCCCTTATATCCAGAAGTTATGGAAGGAATAGAGAAGATATTTTCCAGATACAGAGATCCAGCAATGACATAGTTTTTCACTCAAAGGATTGTTTTTTAATGTCCAGTTTGAAAACCCAGGCAATGACACAAAACAAAGTCCAGATAAAACATTCTTCTTATTCAACAT | |||||||||