miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCTTCCCTATTCCTCCCATT
species: Pinus banksiana
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|292554941|gb|GW773457.1|GW773457 PBA0225.CR_B16 Pba02-Xylem-wounded-Norm (PBA02) Pinus banksiana cDNA clone PBA0225_B16 3', m 

TCTTCCCTATTCCTCCCATT
|||||||.||| ||||||
AGAAGGGGTAACGAGGGTTT

EST sequence (targeted fragment marked with yellow):
TATCACGATACTGATGTTGCAGAATATTTATTTAAAAACAAGGCTCAAAGTTCTGCGTTATTGAAGTTTCTTTGTAATGACCTCAGTAAAGCTTGTTCAGTCAAGCCACCCCCAGTTCCAAAGGATAGAGCACCAGGGGAGCCTTTTGTACCAAAGTCATCCAAAGAGGCTGAGATGGAAAAGATCATGAGATCTATGTCTGGCATGCCTGGAGCACCAAATATGAAAATGTACTCTAAGGATGACCTGATGAATATGCCAAATTTTGGGAGCAATGGGGAAGATGAGGATGATGAGGAGGATGAAGATGATGATTACACTTCTTCTAGAATGAGAAACATTAAAAAACCTGTGGTGTCTGTTGAAAGTGATTGGAAGAAAAGTTTAATTGACGGAGTCCAATCCTCATTTGCTCATATAAAAGATCAAACTCAACATGCAGTTATTGGTGCAAAGCAGAGTCTTAACAGAATATCTAACAAAATAAGGAAGTGGTATAAAGGAAGGAAGTCTGGTTCCAAGCCTTCAAAATCCCAAAAGGATGACTTGTAACTTTTTGACTATGAAATATTTAATGTTTCATCTGGATAAAAAGATTGAACTTAGACTAGTTATTATCCAATGTTTAGTAGATTGTTTTTCCCTCCTCTTTTTTTCCGTTTGTGGGTATTCTGGTTAAAACAGAAAAGGAGAATGGCAATAAATTTTTCTGGCTTGGAAGGCACTTATAGAGACAGATAGTGAAGTGTTGAAGCCTTTTTACACAATTTCTTAGTGGGGCACAACTGAGTGTGATACGAATAGACTAATTATTAGCATCAACTAATTTTTAATCTAGGATTCAAGCAAAAAAAAAAAAAAAA


gi|292534541|gb|GW753676.1|GW753676 PBA0123.C21_G24 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0123_G24 5', m 

TCTTCCCTATTCCTCCCATT
|| ||||||||||.| |||.
AGTAGGGATAAGGGGAGTAG

EST sequence (targeted fragment marked with yellow):
GGGGGGAACCTCCTGGGTAAGGAGAAGGTAATCAGATTGGTAGAAAAATTCATATCCCTAGGTGGGATAGGAGGATTGATGAGGGGAATAGGGATGATGATAGAGATAATACTGAAAAACAGAAGAATTCCATACGGGTGCAACTATTATTTGAACGAAGTGCGAAAAATGCGATCTTTGTTGTCCAATAGAACAAACACTAATACCTTAATTGGGTCGGTCAAAATCTTAAACTATCAAAGTGCTTCTCTAATTGCTCAGGACATATCTTTCCAACTGAGGGACAGAACAAGATCATTTCGTTCCATTTTTAGTCAAATAGTTCGGGATATTCCATTAGTAATGCCCAAAGGGGTGAGGGGGATCCGTATTTGTTGTTCAGGTCGATTGAAAGGTGCAGAAATAGCTAGAACCGAATGCAGGGGGTATGGAAAAACATCTTGTAATGCATTTCGCCATAAAATTGATCACGCTTCTGCGAAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGGATCTCATTCATATAGTAACAAAAAGAAGGGACGTGCTATATCCGAAACGTACGAAATATCGTAAATATCGGAAAGGCATATGTCGTAGGGGTTGCGAAACGGGCGGTACACAACTTGGTTTTGGAAGATATGGCATTAGAAGTTGTGGAGCTGGTCGTATCTCATATCGAGCCATTGGAGCAGCGCGTCGTGCTATAAGCGGACAATTT


gi|292531075|gb|GW749717.1|GW749717 PBA0117.CR_E23 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0117_E23 3', mR 

TCTTCCCTATTCCTCCCATT
||||||| |||| | ||||.
AGAAGGGTTAAGAAAGGTAG

EST sequence (targeted fragment marked with yellow):
GATTTGATTTGATGTGTCAGGAGTCATTATTGAAAGCCATGAATCAAAAAGTTTGATTAACTGCATCAGCGAAATTCTGGATATTGCTGTTGAAAGAGCTAGACTCAAGAAAGCTAATTAGATGATCTAACTCGTTAGCAATGCAGGACACGTTCTGTCTTCATTAGAAGTTCGTAAAGATTGCATAATTAGCTTGTCACTAGATAATAGGAGATTGGTTCTCATCCTCAGTTGCCGATAATGGATGATCTTGTCCTCCATAAGGGCGGTTGTCATTGTGGACGCGTGAGATGGCAAGCACGGGCACCTGTTAGCATTGTAGCCTGGAAATGCAATTGCTCTGATTGTTCCATGCGGGGAAATGTCCACTTTATTGTCCCAGCCTGCAATTTCCAGCTAGAAGAAAAATGTAAAGAGTGGCTTGCAACTTACACTTTCGGCACACATAAAGCAAAACATATATTCTGCAAGATCTGTGGCATAACTTCATACTATATCCCACGATCCAATCCGGATGGGGTTGCTGTGACTGTTAATTGTGTTGACGCTGGTACCATCAAGCATGTCGAATTCAAATACTATGATGGAAAGAATTGGGAAGAGGTCTATGAGAAATCTGGCATCGAATCATTGTCAAAAGTAAGCACCAATAAATGACTTGTTGACGAGGCAGAGAAGGTGCTGCTATATGACTGTGGGATTAGGTTCAGGCACATTTCCTGTAGATTGTGTTGGGCATGGCCCTTTAGGTGCGACTCAATTATCAACTGTTTGATTTTGTTTGAATGTTTAGTTCGGGTTGAGTCTTAACCATTGCAAATATGGTTCGAGTCATCTTCAAGGTAAATTGGGAATTTATGTACTGATATTGCAAACTGGCTTAAAGAATTGAAGTTGTGAAAAAAAAAAAAAAAA


gi|292528381|gb|GW748853.1|GW748853 PBA0116.C21_O11 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0116_O11 5', m 

TCTTCCCTATTCCTCCCATT
| |||||||||| ||| |||
AAAAGGGATAAGAAGGATAA

EST sequence (targeted fragment marked with yellow):
GGGGGAGGCTGTGAAAGAATGCATTAACCCAGTATTTTTGTGAACCCACCAACAACGCGACGACTCTAGTTTGAGCAGGGGCTGAGGAAGAAAATAGGCATCCCGCAACGGAAGAAAACCACGTCGGGGCACCGGAATTTGCGCGCATCGCCGAGAATCAAATCTAGCATCGGGTGGCAAGGGTTCGAGCCTTGGCAAACGAAACCACAAGGAGTGGGCTGCCATGGTTTTATTTTTATACTCCGCTGAATTACATTTGCAAAGTCGAATTTCAACGAACCTGCGCTGATAGACAACTTTATTCACCTTGTTGTTCGAGTTTGAGATTAATCTAGGGTTTTGGCGGCCAGGGTTTTATTTTTATACTCTGCTGAATCACATTTGCAAAGTCGAATTTCAACGAACCTGCGCAGAGAGACAACTTTATTCACCTTGCTGTTTGAGTTTGAGATTAAGCTATGGTTTGATCTGTAATTCATCGAATTGGGGCTGAATTGGTTCGGAAACCCCGAGATTGGACGAATTTTGACACAGAATCGGAGGCAAATAGGAAGAATAGGGAAAATAAGAAGAATAAGACGAGTCGCTTTTCGTGGCATTGAAAGGAAATAGCAGAGAGAAATCTGAGTAGGCAAAGAAAAATATATATTACAGACTCTGTCGTCACGGCCTCCTTTCGCGCCATGAGCCTCTTCGGCTTGGGCAGGAATCAACGAACATTTCGCCCTAAGAAAGTGCTCCTTC


gi|292536434|gb|GW754037.1|GW754037 PBA0123.CR_G24 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0123_G24 3', mR 

TCTTCCCTATTCCTCCCATT
|| ||||||||||.| |||.
AGTAGGGATAAGGGGAGTAG

EST sequence (targeted fragment marked with yellow):
ATAGGAGGATTGATGAGGGGAATAGGGATGATGATAGAGATAATACTGAAAAACAGAAGAATTCCATACGGGTGCAACTATTATTTGAACGAAGTGCGAAAAATGCGATCTTTGTTGTCCAATAGAACAAACACTAATACCTTAATGGGGTCGGTCAAAATCTTAAACTATCAAAGTGCTTCTCTAATTGCTCAGGACATATCTTTCCAACTGAGGGACAGAACAAGATCATTTCGTTCCATTTTTAGTCAAATAGTTCGGGATATTCCATTAGTAATGCCCAAAGGGGTGAGGGGGATCCGTATTTGTTGTTCAGGTCGATTGAAAGGTGCAGAAATAGCTAGAACCGAATGCAGGGGGTATGGAAAAACATCTTGTAATGCATTTCGCCATAAAATTGATCACGCTTCTGCGAAAGTATCTACTCGTTATGGAATCTTAGGTGTCAAAGTGTGGATCTCATTCATATAGTAACAAAAAGAAGGGACGTGCTATATCCGAAACGTACGAAATATCGTAAATATCGGAAAGGCATATGTCGTAGGGGTTGCGAAACGGGCGGTACACAACTTGGTTTTGGAAGATATGGCATTAGAAGTTGTGGAGCTGGTCGTATCTCATATCGAGCCATTGGAGCAGCGCGTCGTGCTATAAGCGGACAATTTCGAAGAAATGGTCAAATATGGGTAAGAGTATTCGCGGATCTCCCTATTACCGGTAAACCTACAGAAGTGAGAATGGGAAAAGGAAAAGGGAATCCTACGGGTTGGATTGCTCGTGTGTCTACGGGACAAATCCTATTTGAAATGGATGGTGTTAGTTTGTCAGATGCTCGACAAGCTGCTACATTGGCGGCGCATAAACTATGTTTGTCAACCAAGTTTGTTCAGTGGTCGTAATAGTGGGAAAAAAAAAAAAAAAA


gi|292529287|gb|GW746397.1|GW746397 PBA014.CR_P07 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA014_P07 3', mRNA 

TCTTCCCTATTCCTCCCATT
 |||| |||||||||||| |
CGAAGCGATAAGGAGGGTCA

EST sequence (targeted fragment marked with yellow):
GCAGGGGAGTCATATTCATGGAAGGTAGACCCATTCTGGTCTGGATCCATTTGGGGGCGGACTGGTTGTGTCTTCAATTCCCAAGGGATCGGAGGCTGCGATTCCGGTGATTGTGGAGGAAAGCTGATGTGCAAAGACGAGAGTCAAGATCAAATCACGGCAATCACTAAAGCTGAGTTCGAACTACTGGGAGGAATAGCGAAGCCCGACATGTATTCCGTTACGTTGGAGAATGGTTACAATCTTCCGATGTCGGTGGTTCCAAGTTATGCCGCCAATAATATGAGTAGCAGCCGCCCCTGCGAGTCCATGGAGTGCAGAGCCAACGTGAATGTGGTGTGTCCGAAAGATTTGCAAGGGAAGAAGAAAGGGGGCGTGGTTATTGCGTGCAACGGTCATTTCGATGGATATTTGCCGAGTTCCCCGGCGTTCAGCAAGGCATTTAAGAAGGTGTGCCCTCGTGCATTCCCCTTCCAGAGCGGCACCATATGCCCTCCTTCAACGGCTTCCTACACCCTCATCTTCTGCCCTCGCCGGCCTTCGCCCTGAATATGTGATGTATTGTGTAGGTTTAGCTCCGTTGGGCTTCTCTGGTCTAATCATTCGACTCCAAGGCATTTCTAAACAACCAATTTTTCATGCTCATTAAGTATACGAATCGCAGATTAAGAGGTTTATTTCCATACTCATGATTGCAACTAGTGTGTGGCACCAACAACGAATTTGAATTTACTGCACAATTAAGGATGTATAGTACTTTTGGTAGTTGCTCTTCTTTTTTCCCTTCTTTCACCGAACGGATTTCAATTTACTTCCAAATTGAGGACAAAAAAAAAAAAAAA