| mature miRNA: TCTTCCCTATTCCTCCCATT species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|5903446|gb|AW042917.1|AW042917 ST27A08 Pine TriplEx shoot tip library Pinus taeda cDNA clone ST27A08, mRNA sequence TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TATGGCCGNGGGGGAAGAATCCTGAGGAAAGCGCTGAGTAGTTTTGCCATACATTTTTTTTCATTCATATAGGTTATGAGGAGAATACCGAGGAAAGGGCGGAGTAGCGAGCGGGTTTTATCTCCGGGAGTCTTTTCTCTCAAATTGATCGAGAACTCTATAGGGTTGGACGGGCTCGAAACTTTACTCCTGGTTGAGAAGTCCAGTTCTGAAGTTCTATGATAGTAATCCTGTAAGCTGGGAGCTGTCAGATTTTGCACCTCCCTCTAGACTAATCTATCACCATGGGTGCGAGAAATATTGTTTCAGATGATGAAGAGGAGTATGAAGAAGAGGAAGTTAGGGATGCTCATGATACAGAGACAGCTGGTGATGAGGAGGATGATGAAGAAGCTGAAGAGAAAGGGCAAGATGAGTATGAGAAAGATGGTTTCATAGTGGATGATGTTGAAGAGGAGGAAGAGGGAAGAAGTGAAAGAAAGCAGTGACGAAGAGATGANGAANNNAAA | |||||||||
gi|37569349|gb|CF671956.1|CF671956 RTCNT1_60_H07.b1_A029 Root control Pinus taeda cDNA clone RTCNT1_60_H07_A029 3', mRNA sequenc TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): CTAATTTGAGCAGGGGCTGAGGAAGAAAATAGGCATCGCGCAACGGAAGAAAACCACGTCGGGGCACCGGAACTTGCGCGCATCGCCGAGAATCAAATCTAGCATCGGGTGGCAAGGGTTCGAGCCTTGGCAAACGAAACCACAAGGAGTGGGCTGCCATGGTTTTATTTTTATACTCCGCTGAATTACATTTGCAAAGTCGAATTTCAACGAACCTGCGCTGATAGACAACTTTATTCACCTTGTTGTTCGAGTTTGAGATTAATCTAGGGTTTTGGCGGCCAGGGTTTTATTTTTATACTCTGCTGAATCACATTTGCAAAGTCGAATTTCAACGAACCTGCGCAGAGAGACAACTTTATTCACCTTGTTGTTTGAGTTTGAGATTAAGCTATGGTTTGATCTGTAATTCATCGAATTGGGGCTGAATTGGTTCGGAAACCCCGAGATTGGACGAATTTTGATTTTCAATCAAAAAATACGCCGAATGCGGATACACAGAATCGGACGCAAATAGGAAGAATAGGGAAAATAAGAAGAATAAGACGAGTCGCTGTTCGTGGCATTGAAAGGAAATAGCAGAGCGAAATCTGAGTAGGCAAAGAAAAATATATATTACAGACTCTGTCGTCACGGCCTCCTTTCGCGCCATG | |||||||||
gi|74167922|gb|DT637850.1|DT637850 EST1152781 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMH823 3' end, mRNA TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): CGGCCGGGGAGAGACGCACGAACAGTTTAGAAACTCTGGAGATTTTGCAGCGAAAGGCCATGGCGATTTTTCGTGGCTTAGGGTTTTTATTTGTTTTCGCTGTACTCTCAGGCCAAGCAATAGGTGCCCCGAAAAAACCCATTGCAGTCGCTCGAAGAGAAGACATTCCTTACATCAAATGTGGAGTCTGCGAACAAATTGTCAAACAACTCGACCGTCAAGTGACGAACAAACGCAATCAGATCGCCCCCAAGCTGCTCTCAGAATACGAGATTATAGAAGTAGCAGAAAATATTTGTAATCTGAAGAAGGAGGAGGGTGATTGGTTGCTTCATCTTGATATTGTGGAAGATGGGGACAAATTGAAGCTTGTTGAACAAGAGCAAGAGGGAGATTGTAATGCAGAGTGCAGGACCATAGAACGAACTTGCCAAGAGGTGATTGGATATCACGATACTGATGTTGCAGAATATTTATTTAAAAGCAAGGCTCAAAGTTCTGCGCTATTGAAGTTTCTTTGTAATGACCTCAGTAAAGCATGTTCAGTCAAGCCACCCCCAGTTCCAAAGGATAGAGCACCAGGGGAGTCTTTTGTACCAAAGTCATCCAAAGAGGCTGAGATGGAAAAGATCATGAGATCCATGTCTGGCATGCCTGGAGCACCGAATATGAAAATGTACTCTAAGATGACCTGATGAATATGCCAAATTTTGGGAGCAATGGGGAAGATGAGATGATGAGGAGGATGAAGATGATGATTACACCTCTTCTAGAATGAGAACATTAA | |||||||||
gi|70783881|gb|DR693529.1|DR693529 EST1083617 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PWAE049 3' end, mRNA TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): GAGAGACGCACGAACAGTTTAGAAACTCTGGAGATTTTGCAGCGAAAGGCCATGGCGATTTTTCGTGGCTTAGGGTTTTTATTTGTTTTCGCTGTACTCTCAGGCCAAGCAATAGGTGCCCCGAAAAAACCCATTGCAGTCGCTCGAAGAGAAGACATTCCTTACATCAAATGTGGAGTCTGCGAACAAATTGTCAAACAACTCGACCGTCAAGTGACGAACAAACGCAATCAGATCGCCCCCAAGCTGCTCTCAGAATACGAGATTATAGAAGTAGCAGAAAATATTTGTAATCTGAAGAAGGAGGAGGGTGATTGGTTGCTTCATCTTGATATTGTGGAAGATGGGGACAAATTGAAGCTTGTTGAACAAGAGCAAGAGGGAGATTGTAATGCAGAGTGCAGGACCATAGAACGAACTTGCCAAGAGGTGATTGGATATCACGATACTGATGTTGCAGAATATTTATTTAAAAGCAAGGCTCAAAGTTCTGCGCTATTGAAGTTTCTTTGTAATGACCTCAGTAAAGCATGTTCAGTCAAGCCACCCCCAGTTCCAAAGGATAGAGCACCAGGGGAGTCTTTTGTACCAAAGTCATCCAAAGAGGCTGAGATGGAAAAGATCATGAGATCCATGTCTGGCATGCCTGGAGCACCGAATATGAAAATGTACTCTAAGGATGACCTGATGAATATGCCAAATTTTGGGAGCAATGGGGAAGATGAGGATGATGAGGAGGATGAAGATGATGATTACACCTCTTCTAGAATGAGAAACATTAAAA | |||||||||
gi|34354230|gb|CF395813.1|CF395813 RTDS2_17_A07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus taeda cDNA clone RTDS2_17 TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TGTTCAGATGTGTCTGATGCTTTTTGTATGCGAGATATATCCGCGAATTTTAATCTACACCTTGAAATCCCTGTGACTTTTGTTTTCGTTTCTAGAGACTGGTCAAAATGGGTGCGTTCGCCCTTCTATCAAGCTGGATTGATGCTGCCACTACTCCCAGGCCCAAGAAGTTCAAACAATTTCAGACCGTGGAGTTGAGAGTTCGAATTGACTGTGAAGGCTGTGAGAGAAAAGTGAAGAACGCGCTTACTTCCATGAAAGGAGTTAGTACGGTAGAAGTGGAGAGAAAGCATAATAAGGTAACGGTGACGGGGTACGTTGATCCGAAGAAGGTGCTGAAAAGAGTGAGGGGAACAGGGAAGACGGCAGAATTGTGGCCTTACAAGCCTTACCATCTGGTTTACTATCCATACGCCGCTCAAGTGTATGACAAGAAGGCTCCTTCTGGCTATGTGCGGAGCGTGGATCCCACTTTATCCACTTACCCCGATGACAATAACAACGCCCCTGAAACATACACTTCGCTCTTCAGCGACGACAATCCAAATGCTTGCACTATTATGTAGTTGTGTGCTTTGTGTAACCTATATAATCTGCTCTGTATATTTGTATTTTGTATCGCGGTGACAAAATCAAACTGATTTTCGCCATTACAAAAATTTCACGAATGAAGTGATAGTGAGGGTCATTGTGCTTGTTTAAAAA | |||||||||
gi|66983491|gb|DR059924.1|DR059924 RTNIT1_20_C12.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_20_C12_A029 5', mRNA TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): TGAACGATGGGGTTGCAGATTATTTTGTTCGGGATTATTGCAGGGCTGTTTGTAGGAGGAATATTTTGCATTCCGACAACATTGGAAGGCCCGTTTAAGCCTGTCACTATTCCCCTCGATAAGAATCTGCGCAGTGGAAGCGACGACCTGCCGCACTATGACCCTCGCCTGGTTAAGAGAGTTCCCTCCATCTTCCCAGAGCAGATAATGCTTGCACTTTCAACTACCCCTCAATCCATGTGGGTGTCTTGGGTAACAGGTGATTCTCAGATCGGACCAAAGGTAACCCCATTGGATCCTTCTTCAGTGAAAAGTGAAGTGTATTACGGCAGAGAAAGAGGTGTATACTCCTTTAAAGCCGAAGGGACATCTGTGATCTATAGCCAAACATATGCAGACAAACGCGTTCTGAATTACACCTCCGGGATTATCCATCACGTTCTTCTCACTGATCTCCTTCCCAGCACCACATACTATTACATATGCGGAGACGAATCTTTGTCTGCAATAAGCGAAGAGCACGAATTTGTGACTGCGCCTTCTACAGGGCCAGACAATTATCTCTCTCGTATAGCAGTGCTAGGAGATATGGGTCTCACGTATAATTCCTCCACGACATTTGATCATCTGGTGCACAATGACCCCTCCATGATTCTACTGGTTGGAGACATGTCTTATGCATCGAATTATATTTCCACTGGTGATAAATCCGCAGCCTGCTTTGAGTGCGCTTTCCCGGACGCTCCATTTTATGAATCATATCAGCCTCGCTGGGATGAATGGGGAAGGTTCATGGAGCCACTGGTATCACGCGTGCCTATGATGGTATTGGGGGGGAACCATGACA | |||||||||
gi|34493271|gb|CF475899.1|CF475899 RTWW2_15_G12.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda cDNA clone RTWW2_15_G12 TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): AATCTGATTTATCATCTTCATTATCATCTTGCGCAAGTCAATGGAGAGGTGGGTCTGTTCAAGTTTTCGGAAGGGGATTGATGCCTTCAAAATTCTGCAATAAGAAGAAGCGCGGGAAGATTCCTGGAGCCAAGGCCAGCCTTGATCACATTCCGAAGCAGTTCAGACAGGAGAATCTCAAAGAAGGGTTGATGGAGAATTTCAAAAATATCCCTGAATCTCTTTATGGTCTCAATCCTTCACAAATGGATATGTTCCTTACAGAAGACAGCCCGATTAAGCGGCAAGCTGACCGAGTTACTGAGGAATCAATAACATCTGCAAAACACTATAGCGAGGGTACTGGTATGTGGAGTTTGACAGGCTTGGAGGATGGGCCATCTAGACTTAGTATGAGTGTGAATATGTACCGAGGTGGGGGAGGAGGGGGAGGAATATGGAAGGCTCANGTCTGCTCCACCTGATTTACCTTCTCTGCTTTTGGATGCTCGAATATTGTACCTACGCATGCCTATTGTCCCTGCAGTAACAGAACTCCTTATTGCTGAACTTATGTGGTTGGACTATGATAATCCTTCAAAGCCAGTTTATTTTTATATCAACTCACCTGGAACACAGAATGAAAAGCATGAGCCCATCGCATTCGAGACAGACGCATATGCTATTGCAGATATGATAGCGTATGTGAAGCCCAAGGTTTATACACTGAACTGTGGAATGGCCTTTGGCCAGGCAGCAATGCTGCTGTCACTTGGA | |||||||||
gi|60646248|gb|DN450003.1|DN450003 EST945802 Sequencing ESTs from loblolly pine embryos Pinus taeda cDNA clone RPICO74 5' end, m TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): CACACTTCAGCACCATATATCTATCAATCTTTCAGTGTAACGAAGAAAGAAAAGCAATGGATGTTTTCTCCCCTCTGACTACGAGACTGGCTCTTAAAAGGGTGAGCCTATGCGTAACCCTTCTGCTCCTCCTTCAGTGGGGCACCCCAACTGTTGATGCACGTGAAGGCATTATGTATGGAGAAGGCCTGCAACAACAACGACGCTCCTGCGATCCGGAGCGACTGTCTCAGTGCCGGGACTACATGGAGCGCCGGAGAGAGCAACCATCGGAGAGATGCTGCGAGGAATTGGGAAGAATGTCTCCACAATGCCGATGCCGAGCCATACAGCAAGTACTCGATCAATCGCAATCGTATGATTCAACCAGGGAGGAACTCTTCATGGACACCGAGGCGGAGGAGAGAGCCGCATACCTTCCAGAAACCTGCAACGTCCGCCAGCCTCCCCGCCGCTGCCATGTTCAACTCCGTTCTCGCTATTTCACGATGGGCAGTGGGTTTTAAGTGCGCGACGAAATATAGGTGCTTTGTCTATGTTATGTATGTAACCGAATAAACAAGGGAGCCACTTAAGCAGCTACGAAATTTTGGTTTTCTTTTTGGAGGAGCTTATGGTTATATATAGCTATAAGCTCTAGTGTCATTTCATTTAATGCCCACCACTTATATCGTAGCCAGATGTGTTCCCTTTTATGTAATTAAGGACTGAATGAACGAGCAAATTCATTG | |||||||||
gi|74162560|gb|DT632491.1|DT632491 EST1147422 Normalized pine embryo library, Lib_D Pinus taeda cDNA clone PIMFK57 3' end, mRNA TCTTCCCTATTCCTCCCATT EST sequence (targeted fragment marked with yellow): CGGCCGGGGAGTTTTGAGCAGGGGCTGAGGAAGAAAATAGGCATCGCGCAACGGAAGAAAACCACGTCGGGGCACCGGAACTTGCGCGCATCGCCGAGAATCAAATCTAGCATCGGGTGGCAAGGGTTCGAGCCTTGGCAAACGAAACCACAAGGAGTGGGCTGCCATGGTTTTATTTTTATACTCCGTTGAATTACATTTGCAAAGTCGAATTTCAACAAACCTGCGCTGATAGACAACTTTATTCACCTTGTTGTTCGAGTTTGAGATTAATCTAGGGTTTTGGCGGTCAGGGTTTTATTTTTATACTCTGCTGAATCACATTTGCAAAGTCGAATTTCAACGAACCTGCGCAGAGAGACAACTTTATTCACCTTGTTGTTTGAGTTTGAGATTAAGCTATGGTTTGATCTGTAATTCATCGAATTGGGGCTGAATTGGTTCGGAAACCCCGAGATTGGACGAATTTTGATTTTCAATCAAAAAATACGCCGAATGCGGATACACAGAATCGGAGGCAAATAGGAAGAATAGGGAAAATAAGAAGAATAAGACGAGTCGCTTTTCGTGGCATTGAAAGGAAATAGCAGAGAGAAATCTGAGTAGGCAAAGAAAAATATATATTACAGACTCTGTCGTCACGGCCTCCTTTCGCGCCATGAGCCTCTTCGGCTTGGGCAGGAATCAACGGACATTCCGCCCTAAGAAAAGTGCTCCT | |||||||||