| mature miRNA: TCTTCTTCATCATCATCGTTC species: Zamia vazquezii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|166937394|gb|FD765237.1|FD765237 Zfi02b_8_F10_C017.g1 cDNA library derived from female gametophytes Zamia vazquezii cDNA clon TCTTCTTCATCATCATCGTTC EST sequence (targeted fragment marked with yellow): AGAAAGTCTCCCGTTGTTGATGGTGTTGTCATGAGGAATCCAGATGGGAAGGAGGTGCGGTATCCAGTATTATTGACTCCAGCAGAAAAGCAAATGGCAAGAGAAGTATGCATACGGTTTGGCCAAGCGGTGTGCGGTTTTGATCTTCTACGCTGCCAGGGAAGATCATATGTCTGTGATGTGAATGGGTGGAGCTTTGTCAAGAATTCTCATAAATACTATGATGATGCTGCATGTGTCTTGCGCAAAATGTTTTTGGATGCCAAGGCACCACACCTCTCTTCAACACTTCCTCCATCTCTCCCCTGGAAGGTCACTGAACCAATCCAACCCTCTGGAGGATTAACACGACAAGGCAGTGCAATTATTGGAACATTCGGACAGTCTGAAGAATTGCGCTGTGTGATTGCTGTGATTCGCCATGGGGATCGAACACCTAAGCAGAAAGTGAAGCTAAAGGTCACACAAGAGAAGCTTTTGAACTTGATGCTTAAATATAATGGTGGAAGGCCACGAGCAGAGACAAAGCTGAAGAGTGCTGTACAATTGCAAGACCTTTTAGATGCAACACGGATGCTGGTGCCACGTGCCAGGTCTGGTAGGGAGAGTGATAGTGATGCAGAAGACCTTGAGCATGCTGAAAAAGCTTCGCCATGTCAAAGCTGTTCTTTGAGGAGGGTGGACATTTTTCTGGCATATACAGAAAAGTTCAATTGAAGCCTCAAAAATGGGTAAAGGCCTTGAA | |||||||||
gi|166943243|gb|FD772450.1|FD772450 Zfi02b_104_G03_C017.g1 cDNA library derived from female gametophytes Zamia vazquezii cDNA cl TCTTCTTCATCATCATCGTTC EST sequence (targeted fragment marked with yellow): GAACATTCTTTTGGTTTGAGTGATGATGATGAAGATGGCAGTAGGGCAGATGATGGAGATGACGACGAGCCAGATTCTAAACGCATGAGGAAGGAAAAGAAAGTAAAGGACTTAGTTGCACTTAGAGTAGACCAGGAGCCGCGTGTTGTCTTGCGGATGACAACTGATGCAGACATTCTGGAGGATGGTTTTCGTTGGCGTAAATATGGACAAAAAGTAGTGAAGGGAAACCCTCACCCTAGGAGTTACTACAAGTGTACCAGTGTGAAATGCACTGTACGCAAGCATGTTTAGAGGGCATCAAATGATCCCAAAGCCGTTATCACAACATATGAAGGAAAGCACAATCATGATGCTCCAGTACCAAGTGCCAAGAAATTGCAGCTATGATGGTGCAGACAATGGTTCATAAGTTTAGAGTGGAAATGGTGCTGATGTGTGGTACAAGACAAAGAGATCTGAAATAGACCTTTTTTTTTTTTGGGAAGATTCCAGAGCATAGCTGAAGGATTATGTTAGGGTTATAAG | |||||||||
gi|166946742|gb|FD775294.1|FD775294 Zfi03b_21_D02_C018.b1 Second Zamia male gametophyte library Zamia vazquezii cDNA clone 122Oo TCTTCTTCATCATCATCGTTC EST sequence (targeted fragment marked with yellow): GCCCGTCCCGAAAAGAAAGCTGCTGTTGCAGCAAATGCCTCTGCACACCGTTTATCGTCAGAGGATTCAGTTCATGTGAGTGGAACCGAAGGTGCAATTCAAGCTTTGCGAAAAGCTGATCTGGCAGACAGCAAAAGTGTTGATTCCGCACGGTCTACTGATGATGAAGATGATGAAGAGGATGAAGTGGAGGCAACAAGAACTGCAGAAATAAATCTGCAAATTAAACGGGTGTTGACCGAAGTGCTTTTGAAGGTGACTGATGACCTTTTTGATGAAATTGCACAAGAAGTTTTGGACGAGGATGATCATATTACCCAAGCAAAGAAGTATGGAGTAAATGACCGTGGTATAATGATAAGCTTTTCAAGGGCATCTTCACCACCTCCATCGGTTCCACCCCCTGCAGTATCTGGAAAGGTGTTTATTTCACCC | |||||||||
gi|166942848|gb|FD772375.1|FD772375 Zfi02b_103_H03_C017.b1 cDNA library derived from female gametophytes Zamia vazquezii cDNA cl TCTTCTTCATCATCATCGTTC EST sequence (targeted fragment marked with yellow): TAAGTCTTCGTAGTATCTTTTCTCATTATTTTTCCCGGAGCAAATACGAAGAGAGGGCTGAACGCGGTGCGCAGCCAAACCAGGCCCTGAGCCGTTCTTATCCTGCGATTCTGCGTTTTGAAGCTTTTGCCCGATGAAGGGAGGTAAACAGAAGAACGAGGCGTCCAGCACGCTGAAGAAAGTGGAAGATAAGAAAATTGCAAAAAGAATGCCTGCTTCAAAAGATGACAAGCAAAACAAAAGGCAGGAAAAGAAAGATCGAAGGGGCAACAAAGATCCGAACAAGCCAAAAAGGCCTGCAAGTGCCTTTTTTGTATTTATGGAGGAATTTCGTAAGACCTACAAGGAAAAAAATCCTACTGTGAAGTCTGTTTCTGTTGTTGGGAAGGCTGGAGGAGACAAGTGGAAATCAATGTCTGATGCAGAAAAGGCGCCATATAAGGCTAAGGCTGCTAAAAGAAAGGCAGAGTATGAAAAGTCTTTGGCAGCGTATAATAACAAACCAAGTATTGCTGATGATGCTGAGGAGTCTGAAAAGTCGAAGTCTGATATAAATGATGATGATGAGGAAGGCGGAAGTGGAGAGGATGAAGATCAGGATTATCTTTTAT | |||||||||
gi|166936267|gb|FD766421.1|FD766421 Zfi02b_24_F05_C017.g1 cDNA library derived from female gametophytes Zamia vazquezii cDNA clo TCTTCTTCATCATCATCGTTC EST sequence (targeted fragment marked with yellow): TTAATGAAGACAGTGATGATGAAGAGGATTCGGCATCTGCTCGACTTGCTCGTACACCAAGTCAGCCAGCAAAGTCTGTTATGGTGAATGGAAATGCATTGAGTTATTCATCTATCAGAGCTGGTTCAATTGGATTGGTTGATTATGAAGACGAGGATGATGATTCTCCATTGCCAGCGGCCACCGGTAAGGAAATTCCTGAAGTTGGTAAATCCAGCAGCATGGTCTCTTCTTTCCCCATGAATGATTCTCTGGGGCATGAGGTGCTGAATTCTCCCGGTGTGAAACGAAAACTGGCTGTAGGTTCCAATGATGATGAGTCTGAAGTTCTGAAGAAACGCAGACTACATGGAAATGCACAAAATCTCTCTCCAACAGCAGAACCAATAGACAGAATACAGCAGTCCATGTATAAGGAAAAACATACTTCCTCGAGTTTTGATTGTGAAGGAGATGTTGAATGCTCTAAAGTGGAGTTTGATGCTAAGGTAGAAAGGCCTATAGATGATATGGGAGAGTGTGCAGATTTGAGAGAGAATTCAAATGGATGTGAAGCAAGTGTTACAGAACCAAGAAATGATGTTGGAAAGCATGGTAGTTCTCCAATCTCAAAAGAAGGCTTGGGTACACCAGATAACGGAGTGAAAGGAAACAATTCCTTGAAAGGCAAAACCAGTGAAGGGAAGCTG | |||||||||
gi|166946346|gb|FD775611.1|FD775611 Zfi03b_26_G04_C018.g1 Second Zamia male gametophyte library Zamia vazquezii cDNA clone 122Oo TCTTCTTCATCATCATCGTTC EST sequence (targeted fragment marked with yellow): GAAATGGCCAAGTCAGGAAAGCCGAGGGCGTCAAGAAACAAGGACTTGATAAGGGGAATAGGGCGGTTCTCGAGGTCTAAGATGTACCACAAGAAGGGCCTCTGGGCGATCAAGGCTAAGCACGGCGGCGTCTTCCCCACCCACGAACCGCAGCCGCCTCCGCCCAAACCGCAGGAGAAGCCTCCCAAGTTTTACCCTGCAGAAGATATTCCCAGGCCCCTCCTCAGCAAGAGCAAGCGCAAGCACAAGCCCACCAAGCTCAGGTCAAGCATTACCCCCGGCACTGTTTTGATCCTTCTCGCCGGCCGTTTCAAGGGAAAACGTGTTGTTTTCCTCAAGCAGCTGGACTCCGGCCTTTTGCTTATTACAGGTCCGTTCAAGGTGAATGGTGTTCCGATCAAAAGGGTGAACCAGGCCTACGTCATCGCCACCTCTACCAAGCTGGACGTGAGCGCCGTTGATGTCGGCAAATTCACAGACAAGTATTTTGAAAGAGTGGTGGTGAGGAAGAAGAAGACCGAAAGCGAGTTCTTCGAGGCAGAGAAGGAGGAGCGTAAGTCATTACCCCCAGAGAAGAAGGAAGATCAGAAAATTGTTGATGCTGAGGTGTTAAAGGCAGTGGAGGCTGTTCCTGATTTGAAGACGTATTTGGCTGCTAGATTTAGTTTGAGGTCAGGAATGAAGCACATGAGCTTGTTTTTTAACAGACAGGCATATTCGGTGATCTGTTT | |||||||||
gi|166945982|gb|FD774809.1|FD774809 Zfi03b_12_D12_C018.g1 Second Zamia male gametophyte library Zamia vazquezii cDNA clone 122Oo TCTTCTTCATCATCATCGTTC EST sequence (targeted fragment marked with yellow): TATCTTTTCTCATTATTTTTCCCGGAGCAAATACGAAGAGAGGGCTGAACGCGGTGCGCAGCCAAACCAAGCCCTGAGCCGTTCTTATCCTGCGATTCTGCGTTTTGAAGCTTTTGCCCGATGAAGGGAGGTAAACAGAAGAACGAGGCGTCCAGCACGCTGAAGAAAGTGGAAGATAAGAAAATTGCAAAAAGAAAGCCTGCTTCAAAAGAGGACAAGCAAAACAAAAGGCAGGAAAAGAAAGATCGAAAGGGCAACAAAGATCCGAACAAGCCAAAAAGGCCTGCAAGTGCCTTTTTTGTATTTATGGAGGAATTTCGTAAGACCTACAAGGAAAAAAATCCTACTGTGAAGTCTGTTTCTGTTGTTGGGAAGGCTGGAGGAGACAAGTGGAAATCAATGTCTGATGCAGAAAAGGCGCCATATAATGCTAAGGCTGCTAAAAGAAAGGCAGAGTATGAAAAGTCTTTGGCAGCGTATAATAACAAACCAAGTAATGCTGATGATGCTGAGGAGTCTGAAAAGTCGAAGTCTGAGATAAATGATGATGATGAGGAAGGCGGAAGTGGAGAGGATGAAGATCAGGAGTAACTTTTATAGATGAAGGTCTTTGGTGGATCATGTCTCTTATGAACATGTGACTTGTTGGATGGATTTATAGCCCATCA | |||||||||
gi|166936470|gb|FD767208.1|FD767208 Zfi02b_34_F12_C017.g1 cDNA library derived from female gametophytes Zamia vazquezii cDNA clo TCTTCTTCATCATCATCGTTC EST sequence (targeted fragment marked with yellow): AAACTTTCTTGTAGTTCATTAAATTTGATGAAAAAGACAGTCCCCATTTAAAGACTAGGACAACCCAAATATTCAGTGATGAGTTAAAGTTGTCTTCATACAAAGGTGTGGCACTTTGTAATTCAGCCAGCATGCACCATACCTAATCCATCCATTCATAGATTGAGCATTTGCATCAAAATGACCATTTTACTCTTTGTATAATGCTGTCCACAGCTTTCCTGCAACGTCTTCTAATCTGTCCTATGTATTTGTTACCATCTGATGGAAGCTAACCTACTTAGAGCATGTCACAAATCACTGCATTTCATTGAAATATAATGATCCAAACTAAAAAGCATGCAAGTATAGTTGTAGATATAAGCCCATGTCATCCACACCAGCCAATTGTTTTTTGTATGTTCAAACCAGAAGAAGAAGAAGATGATGATGAAGATGAAGGTTCTTCAGGAGGCCTAGGAGGTCTAGGTTTTGCATAATCTGCAAAGATGACCCAGCCATCCAGAAACTTGCCATCCATCCCCTCCCGAGCCTTCTCAGCCTCCTCTAGAGTTGCATATCTAACAAATGCAAATCCTTTTGATCTTCCAGATGCCCTGTCAGTTACTACTCTAGCTTCTACAAGTTGACCAAAACGTGAAAATGCTGCTCTCAACCTTCATC | |||||||||