| mature miRNA: TCTTGATGATGCTGCAACGGC species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|55392019|gb|CV712237.1|CV712237 UCRCS08_0001B20_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensi TCTTGATGATGCTGCAACGGC EST sequence (targeted fragment marked with yellow): CCCCTTTTTTGACAAATGGTATTGACTTGTCTATACTTCACAATATCTGATTCAGTTGGTAATTTTACAGAAAATATCTGGAAAATTTGAGCCGGTTATACAACACATTTATATAATAATTTAATAATGGTATCAGTGATATACTGATATTTGAACTTACCAAAAACGCATTTGGGGTATGGCGTGCAACCGTTAGCCGGAAGCATTATCATAATGGAGTTCCACACGCATTTGTTCCAAAAGTATCTTTTCAACACCATCAACAAAGCTTGATAAGTTCTGCCGAATATGAACATCCAAGGAATTTGCTGCTTCCTCAACCCTGCAAAAGAAGCTTAAAGAAATTCCCTTGGAATGATGATCTGAGTTCTTCAGAGAAATTACTTTCAATGGAGAATTTGACAGTGGCCAACCTTGTGACGGCTTTATGAATGCATCAACTCCTCCAACCAAATGAGCAACAATCATCTCATCTCTCTCAAAGTACTCGAAAAAATGCCTTGATTTATTGGCAGTCTTCACTACAAATCGTCTTAGAGTGCTTAGAATAATTCTATCTTGAACATTTCTTATGAACCACTGTAGTGAAGAACTTGTCTCCAGCGAATCCAACTGTGTACCTGATTGCCTGAAAGACTTTGCAGCATCAACAAGATCACTGATGTGTACGTCATTTGGAAACATCTCCACATTCTTTATTTCCATTGTCCCATCTATAACTTCTATAAGCAACTCATGATTCACTTCTGATGGCTCAATTACATCTTCAATTTTATGCTGA | |||||||||
gi|188297018|gb|EY723007.1|EY723007 CS00-C3-703-051-F11-CT.F Sweet orange fruit, development stadium (4 of 6) Citrus sinensis cD TCTTGATGATGCTGCAACGGC EST sequence (targeted fragment marked with yellow): CTCCCGGTGCTGTTCTCCCCCCCCACACCGGGGAACCCGAGTCCCTTAGCAGGTACNGGTCCGGAATCCCGTGGNTCACCCACGCCGTCGGACCATAAGGAGAATAATATCTACTGTGATGTTGCTTGTTTCTTTCAAGGCAATGATGTAGATCTACTAATGAAATTCCATAGTGCCTCTCGGTTTCTACCCAGAAATAGGAATACGTGTTCTTGTCGATAAATCTCTCATTGCTATTGGTTCATACACCAACATAACAATGCATGATCTACTACAACAGCTGGGTATGGAAATTGTTCCACAAGAATCACTCAATCCTCCAAACCGCACCACGTTGTGGCATCATCAGGATATCTATCATGTTCTTACATATAACCCCACTCTATCGACGGCCTATGTCTGGATCTGTCCACAGTAAAATAGCTCCGGCCACATCCCAATATTTTCCAGAAGACGACTAGGTAGAGACTTTCGAGTTGCCATACTCCCTTATTCAATGGACAGACCAAGTGTAGGATGTCTTATCTGCGCCACCCTGGATTTGCTCAAATGCAAGATCTTCCTTGGGATCGATATCCGGTCACTCCTGCCCTCACCTCAGTGAACAACTTAATTTTCAATCCAGTATGAATTGGTTATCTCTACTCGCGNGGGCCCCCGACGGCATGCTTCAAGCCCGCTCCGCGGTCGCCGGCTCACAATCCCCCTCCACCGCTCGTCCCCCCCAACCACCGTCCCGCACCGCCTACCCCTCCTCGCCCACCTCACCACAACTCTCAGCCTCACCAGCTCAGTCCTTCCTCCCCGCAGCACACTTCGTCTCAAGTACTCACGCATGACGTTTCATCAGGACGGCCTCGTCCGCCCGGAAGCCCACCTCACCTCCAACCCCTCCCCTCCTGACTGCCTCGAGCCGTCCGCGCCCCTTGCCCGACATCCGCCCTCGTTTGACCACGGCCTCTGGTCGCTGGCGACGGCGGCTGCTGGCGGACCACTGCCCCGC | |||||||||
gi|219249147|gb|GE213430.1|GE213430 305 'BH' (somaclonal variated plants of Skaggs Bonanza navel orange) SSH library Citrus sine TCTTGATGATGCTGCAACGGC EST sequence (targeted fragment marked with yellow): ATTTCGAGCGGCCGCCCGGGCAGGTACAAGAGAGATGGGTATAGTGAGGCTGAAACTATGCAACTTCTCAGCCAAACCCATCTTCAGTCACCAGCTTCATCATCGCTCAATAAGTCCAGTGAGATGCAAAGATATGAGCAATTCAGGAGATCTGGTGAATCCCATTTGCTACATATGGTTCCCCCACAATGTAACCAATCAAACTATCAAACTCATCAGTTAACTCCAGGCAGCAGTAAGAGAGGCCGAATTGGGAATGAACTTTCACTGTCAACAAATGATCATCATCAACAATGGCAATCTGGTCCTCATATGTTTGCAACTGCTGCAGCATCATCAGGATTCCCTCAGCAGATTAGATCCTCTCACTCTCAGAATTGGCTGCAGAATAATGGATTCCACTCCCTTGTTAGACCCTCCTAAGAATATGACATAATGATCGTCTAATCTCTCATTTCCTTCAGATTTTTGCTTGTAAGCATGTAAAATCATCAATTGTAGTATTCGATCACATATATTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGCTTGTACCTCGGCCGCGACCACGCTAAT | |||||||||
gi|188387717|gb|EY682577.1|EY682577 CS00-C1-650-034-D04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRN TCTTGATGATGCTGCAACGGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCCACGCGTCCGGTCCCAAGGCAAATGAAGGGCATTCCCAGTTTCTTTCTGGCCCTTATGGTGCCCATGGTGGAAGGACTTCAAGGGTAACTTTTGAACTAAAATAATCTGATCTTTGGATTTCAGTGTACATGGTTACTTACTGCGAGTCCTCAACCTTAGGAAAATTCTTGTGAACCTGAAATCAGTTACAGAGACACCAGTAATGCTCTATCTGGGAGTAATTGGACTGAAAATTAAATCTTGTTGACACTCTTATCTTCAAATTTGGGCTTTTTGACTTTTATCTCATAATCAAGCTCTAAAATATCATCTGCTCTATACGACGGAAGAGCATGAAACATGTTTTGTGTATTTTAGCTTCAAATAATCTCAAGATCATGTTCTTTCTGATTCGCTTTTGTAGACCGAGAACTCTACTGCTGCAGCTGTGGGGGATTCAGCTTCCGAAGGACTTATGAGGACGTCAGAGCATCCAATTTTCTGGAATGGTGCATATCCTGGTCTTCTTACTACTGAGGAAAAAGCAACAGAGAAGAGAATCGAATTGGGTCCTCCACAAGGCCTCCCTAACTGGGCATGGCAAATGCATGGCCAGGTCAGTGGTACCCCAGCGTCACTGTTATCTAGTGCAGCATCATCAAGATTCCCATTTTCGGCTGCCCCTCCCTCCGCTGGCCGTTCTCTCATCCAAAACCTCTCAATCCGGTCGAACGTTAATCTCCGGTTTCCATTTCAACTAAAACTAATGGCCCCCAACACCTCTCATTTTTATTAACAAAAAAAACTGGCCCCAGGGCCCCCCCTAAACCCAATTTTCCCCCCCGCAAATTTGAAGGGGCC | |||||||||
gi|57933310|gb|CX673781.1|CX673781 UCRCS10_24G08_b Madame Vinous Sweet Orange Multiple Pathogen-Infected cDNA Library UCRCS10 Ci TCTTGATGATGCTGCAACGGC EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTGCTTTTCAATCAGCACGGGGACTATTTGTATATCAGAATAAACTGCAACAACAAAGAAGTAATCTACAGAGTTCAACCTATATGTCGCCAAGATCTCAATCCAATTTCATCCAACAATACATTACCTGTTTCAGAACATAAGCTTCAAACAAAATGTGGTTCTCTTCCAATGAATTACTGACTTGGGGATCTAAATCCAATTTTGTCCAACGATACATCACCCGCTTCAGAATCATAAACTTCAAAAAATAGCTGGTTCTCTCCTAATGGGTTCACTGACTAGGGGGCCTATCTCCATTGCGTTCACCTGAGTACTCCCGTCTCGGACTCCGGCTTCGGCTTCTGCTCACGCTGTGGTTACGTTTCGGGGTCCGGCTTCTGCTTGGGCTCCAGCTCTGACGTTGGCCTCTGTGGGGACTTCTACTTCGGCCTCTGGGCCCGTCGTAAGCTGGAGAACGCGAGTATGATCTCTCTCGGCTATAGTTCTGACCATGAGGTGAAACAGATCTGGAGTAATTCCTGCGTCGGGGTGGAGGAGAATAATCACGACCGTAGGAGGGAGATCTTGCATAACGTGGAGGTGGGGAACGAGAATAACGAGGAGGCGGGGAACGTCTACGAAATCGACCCCTTCCCCGCTCCCTTGCTCTCATATCAGATGGCTTCTTCCTATTCTCCTCAGCAAACACAACAGTCAACTCCCGGCCAAGAAGAACCTGACCATCCATGTGACGTTTGGCCTCTGCAGCATCATCAGGTTCTACAAATTGGATAAACCCAAAACCACGAGGTTCCCCAGAATAATAATCCCTTGGCAAGTAAATGTCCTTGATTGCTCCAAACTGCTCAAATGGC | |||||||||
gi|188430687|gb|EY650740.1|EY650740 CS00-C1-100-014-C09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ TCTTGATGATGCTGCAACGGC EST sequence (targeted fragment marked with yellow): CGCGGCTCCGGTNCCGGNATTACCCCCTCGACCCACGCGTCCGCGAGGATTGAACAGCTTTTATTTTTCCTTTTTCCAGTTGTCTTTAAATCATCAATTTATGAATTTAAAATGAGAGCTGGAAAAAAGCTCTGGTGAAAATTGAAAAAAGAGAGTAAAGGTGGGAGCTTTGCAAAGAAACTGAGCTGACGGATGACTTTTTGAGCTTTTTAATTCAACCCCATGGCTGAAGATCTCTGTTCCTTCACCAAGGATACTTTCAATTTAAAGTCTCCTAAGAAGTCTCCTTTGGTGTTGAGAATGTTAGTATTGGTGTTTGTAATGGTCTGTGGTGTGTATATATGCTCGGTCTGTGTAAAGCAAATCAGCGCCCGGACAAAGTCTGAATTTTTGAATGTTCAAGTTATTGAAAGGCCTTGCCCAGTGCCTAATATTGAACCGTGGGAGATTCCTTACGTGCATTATCCTAAACCCAAAACTTATAGCCGGGCTGAATGTGCGTGCAATCCTGTGCGGTATTTTGCTATTCTGTCAATGCAGCGATCGGGCAGTGGATGGTTTGAAACATTGTTAAATAATCATACTAATATAAGCTCAAATGGGGAGGTTTTCTCTGTTAAAGTAAGGAGGAGTAATGCTTCCACCATCGTGGAAACTTTGGATAAAATTTATAATCTAGACTGGTTCAGTAGTGCTTCCAAGAACGAGTGCACAGCCGCAGTTGGGTTGAAGTGGATGCTTAATCANGGTTTGTTGCAGCATCATGAAGAAATAGCAGAGTACTTCAGAACAAGAAGTGTTTCGGCTATATTTCTCTTCAGAAAGAATCAGTTGCGCAGGATGATTTCAGTACTTGCAAATTCATATGATCGAAATGCTAAGCTATTGAACGGGACCCACAATCACACGTTCATTCACCGCATGAGGC | |||||||||
gi|188408018|gb|EY650247.1|EY650247 CS00-C1-100-008-H09-CT.F Sweet orange leaf, greenhouse plant Citrus sinensis cDNA, mRNA sequ TCTTGATGATGCTGCAACGGC EST sequence (targeted fragment marked with yellow): CGCAGTTTCCGGTCCGNATTCCCCCCTCGACCCACGCGTCCGCGAGGAATGAACAGCTTTTATTTTTCCTTTTTCCAGTTGTCTTTAAATCATCAATTTATGAATTTAAAATGAGAGCTGGAAAAAAGCTCTGGTGAAAATTGAAAAAAGAGAGTAAAGGTGGGAGCTTTGCAAAGAAACTGAGCTGACGGATGACTTTTTGAGCTTTTTAATTCAACCCCATGGCTGAAGATCTCTGTTCCTTCACCAAGGATACTTTCAATTTAAAGTCTCCTAAGAAGTCTCCTTTGGTGTTGAGAATGTTAGTATTGGTGTTTGTAATGGTCTGTGGTGTGTATATATGCTCGGTCTGTGTAAAGCAAATCAGCGCCCGGACAAAGTCTGAATTTTTGAATGTTCAAGTTATTGAAAGGCCTTGCCCAGTGCCTAATATTGAACCGTGGGAGATTCCTTACGTGCATTATCCTAAACCCAAAACTTATAGCCGGGCTGAATGTGCGTGCAATCCTGTGCGGTATTTTGCTATTCTGTCAATGCAGCGATCGGGCAGTGGATGGTTTGAAACATTGTTAAATAATCATACTAATATAAGCTCAAATGGGGAGGTTTTCTCTGTTAAAGTAAGGAGGAGTAATGCTTCCACCATCGTGGAAACTTTGGATAAAATTTATAATCTAGACTGGTTCAGTAGTGCTTCCAAGAACGAGTGCACAGCCGCAGTTGGGTTGAAGTGGATGCTTAATCANGGTTTGTTGCAGCATCATGAAGAAATAGCAGAGTACTTCAGAAACAAGAGTGTTTCGGCTATATTTCTCTTCAGAAGAAATCAGNTGCGCAGGATGATTTCAGTACTTGCAAATCCATATGATCGAAATGCTAAGCTATTGGACGGGACCCACAATTACACGTTCATTCACCGCATGAGG | |||||||||
gi|188430339|gb|EY713098.1|EY713098 CS00-C3-702-027-A04-CT.F Sweet orange fruit, development stadium (3 of 6) Citrus sinensis cD TCTTGATGATGCTGCAACGGC EST sequence (targeted fragment marked with yellow): CCACGCGTCCGCCATAATCTAGATTTGAGTTTGGGCAGTTCAGCTTCTAATCAGCAAAGCAGTGCGGACTTTGCTAATAGAATGCAATATACTGTAATGGAACGGCCTGCTCCGGCATCATTGCCCAATGAAGTTGACTGGCACAACCGGGGTTATAGGCCTAAGCAGCAAGAAGCGTACAGTAGGCAGCATGATCTACCGTACAAGACAGATGGGTATAGCGAGGCTGAAACTATGCAACTTCTCAGCCAAACCCATCTTCAGTCACCAGCTTCATCATCGCTCAATAAGTCCAGTGAGATGCAAAGATATGAGCAATTCACGAGATCTGGTGAATCCCATTTGCTACATATGGGTCCCCCACAATGTAACCAATCAAACTATCAAGTAGACTCATCAGTTAACCCCAGGCACAGGCAGCAGTAAGACAGGCCGAATTGGGAATGAACTTTCACTGTCAACAAATGATCATCATCAACAATGGCAATCTGGTCCTCATATGTTTGCAACTGCTGCAGCATCATCAGGATTCCCTCAGCAGATTACATCCTCTCACTCTCAGAATTGGCTGCAGAATAATGGATTCCACTCCCTTAGTGAGACCTCCTAAGCATATGGCATAATGATCGCCTAATCTCTCATTTACTTCAGAATGTTGCTTGTAAGCATGTAAAATCATCAATTGAGTACTCGATCAATATACTTGCAAATTTCCCGGAGAGGGAAGACCCCTTACAAAAACCAAGATGGGCCTGCTGGGCAAAAGGGCGGACCGCTCTAAAGACCAAACTTACCTACGCGGCCTGCAACGCATAACCCTTCAAAGGGGCCCTAAATTCATTCACCTGGCGGCGGTTACACAGACCGGCGGGGAAAACTGTGGGGGCCAAATTAATCCGCTTGA | |||||||||