| mature miRNA: TCTTGCCTACTCCACCCAT species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|78350956|gb|DT571230.1|DT571230 EST1081870 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AAAATTTATTACATTTGCATTTCCCAATTCCCCTCCCCATTTCCCATTTCCCGACCCCTATCCGATAAATCCCTAACCCCTTCCCTCCTCCCTTTTTTCCCCAAATCGAAAACCCACCTCCACCGATCCACCATTCCACCTCCGGTGTCCGGTCCTCCACGACTCCACCTCCGCTCTAGCCTTCAACGTCTTCTACCTTTGAATTTCAAAGTGGTTGGGTTTGGCAAAAAAAGAGGACCTAACTCATATGAGAAGTAAGAGATCTACGTAGGTGAAGAAGGCAAGAAGCCTTGTTGAAAGCTTTGATGGATTTTAAGTCTTTGATTTCTTTTGCTATTTCTTCAATTCGACAAATTAGCGGGCAATTTACATTCTCTGTCAAAAGTTTCGGTGTTGTGTAGTAACCAATTTGGTAGGAGATTCAGAGGAAGAAGGGTGATCTTTCATAATTAGTAGTAAGTTCATGTTTTTATTGAATGGCACTAGCTTTGCATTGACGCCCTGGTTCTTGTTCTCGTTCACAATTGATTTTAGTAAAAATATCATAGCTTGCTTCTGTTTCTCTACATCTTTAACTTCTATTTCTTTAAAGCTATAAACTTGCTTGCCGTAAACCCTAAAATGATGTACTCCTTTAATCGGATTGCCAAATCCATCACAAAGCCAGTGATGTACACAATTCACTCGAAATTTGGTAAACCCCACTTAAATCTGACTACCCTTTTCAAAACTCTCTCCACTAAACCTCCTCAAAATGGCAAAGATGACTCTTGGAACGATGCCTGGGAAACAGCTTGGCTCCCTGATGACATTTCTCCCAAGAACAGAGCTCCTTGGGAAGCTGATGTTAACTTCCCTTCTAATGAAGAATCAGC | |||||||||
gi|78339593|gb|DT559867.1|DT559867 EST1070507 GH_TMO Gossypium hirsutum cDNA, mRNA sequence TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): CACCTTAGCTTCCTCTTCATTCTCTAAGCTGACGTTGTCGCCGACTGTATTACTTTCTGGGAAACTTGAATTTTCCATCATCACGAATAGCAGTTCAGTAAAATAGTTTACAGCCCCAAAGCCCCCCCCCAAAAAAAAAACTGTGAAATTTTAATTGGGGCTTCCTTGGAGATATGGAAAAAGTAAATATTTTAGAGTTGAAGGAAGGATTCTTTTTTTCTGTTTAAGGTGAAGTTTTTCTTTCCCTTCAGAATTCTACCATTTTATTGGGTTAAGTAGGTAAGAAAGGCAGAGGTGAATTAGGGTTTCTCTAGAAAAGATAAGATAAGATGGGGAGAAGAGTTGCTGCGGTGCATTGTGTGGGGCAAAAACCAAGCTGATTATTTTCCTTTGATATTTCCTAATTAATTTATTTCAGGCACAATAATTCAAATTTTAAATCCCACTCTAAACATTTTTATTTTACCATTCAATTAAATATTAAACTTTTTATAAATATATACTACATAATCCTATTTTCATTCATGTGTTTTATAATCTAATATTGTTTATAATTATATAAAATATGTTTTATAAATTTTATGTGATGATTTTTTTTATTTGTGATAGAATTATACTTCTTTCATTATATTATTATAAGTTTGAGTTTTTTATTATAAAATCACTTAAAACTATTCTTTTAAGAAAGTAATATTACTTTGTTTTAATTTAAATAGAATAATTGTTTTGAATAATACCGAGGCACAGTTATTAAAGAAGCTAAACAAAACGGTGCGCAATAAATAAAGATACCCATTAGCCTCGGTTTCCTGGGATAGGAGATAAAGAAAAGAAAAGGCAAAAACCAGGGTTTCAAAACTAAATACAAAAGAGTGTAAGAAGCTCCAAATTGAAGCATGAAGAGCCCTAGC | |||||||||
gi|164268492|gb|ES849940.1|ES849940 UFL_679_86 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): GGCACGAGGGATGTAGAGAGAGTGTGTTCATATGAGTGGAGGAGTGGGCAAGACTAGCTATGCCCAGAATTCTTCTCTCCAGAAAAAGGGTTCAGACATGATGAAACATGTAACCATGGAAACTATACAACAGCTCTACCATGAAGTAACAGCCAAGAGCTTAGGGATAGCTGATTTAGGATGCTCTTCAGGACCCAACTCATTGTCCCTCATCAAAGACATTGTCGAAGCCGTTGAAGGAAGTTGCCATAAGACTTTTCGTCCCTTACCAGAGTTTCAAGTTTTCCTCAATGATCTTCCAACAAATGACTTCAATTCGGTTTTTAAGACCTTGCCTGATTTCTATAGGGACCTTAAAAAAGACAAAACTGAAAGGTGCCCGGCTATTTTCATAGCAGGTTACCCTGGTTCATTTTATGGCAGACTATTCCCAAACAATTGCTTGCACTTCATCTATTCTTCTTACAGTTTGCATTGGCTCTCCAAGGTTCCCCCATCTCTTTACGATGAGCATGGCAAGTCTATCAACAGAGGGAACGCTTACATATCGGAATCGAGCCCTCCAAGTGTGTCCCGAGCGTACTGGAACCAGTTCCAGGAAGATTTTTCATTGTTCCTGAAATCACGATCAGAGGAGCTTGTCACAGGAGGGAGAATGGTGCTCATTATTTTGGGAAGAATAGGCCATAATCATGTTGATAGAGGCAATTCTTTCTTCTGGGAAATTCTGTCAAGATGCCTCGCCATATCAGTTTCTCAGGGAGAAATTGAAGAGGAAAAGCTAGATTGTTATGATGTCCATTTTTATGCAGCATCAAGGAAATGAAATAGAAAGAGAAAGTGGGAGGAGAAGGGTTCCTTCGAAATTGAAAAGGGGAGAAGATGTTTTGAGATTGGAGCGAAGAAAGTTCAGAGGGGGAGAAAAGGTATTGGGCACAGCCAGGGGGCCATGAACAGGGGGAGGGGCAATCCCAAAAAATTCCATGGGGTTTAAAAACCCATTTTTGGGAAAAGGGGGGAACAAACCTTAAAAAGGCCCCTTGGGTTTAAAAAAATTTATGGGGGGAAAAAATGGGAAAAAAATTAAAAAAAAAAAGGGGGGTTAAAAAACAAAAAAAAATTTTAAAACCCCCCCTTTCCACTTTTTTTTTCTTTTCTTGGGGTTTTTTTTAAAAAAAAACAAATTTATGGAGAGAAAGTGGGGGGGAAATTAGCGGGGGGTTTGAGAAAAAAAATATTTTTTTAAACATGGGGGGGAAAAAAAGTTTTGTTGGAAAAAATTTTTTTTAAAAAAAACCCACCCGCCCC | |||||||||
gi|84154993|gb|DN804348.1|DN804348 G.hir-8-10 DAA bolls irrigated 148 8-10 DAA cotton bolls from irrigated plants Gossypium hirs TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): GCACGAGGGTCCATTTTCGTTGTCTTAGGAAATTGGGAGGAGAAGGCAAGAATGGAAGCATTGACCATGCATTTAGAAGACTTTGAAAACTCCGAAACAGCCTCGATTATGAAGGAGATTTCTCATTTGATCTCTTCTTCGTCTTATTTCTCTCTCTTTCTTTTTCATTATTGACTTTGATATGATCAAAACAGTATATCAAAGCAGCGGCAGCGACTCTTTTCTTCATTTTCTTGAAATTTTCAAATCGACCAAGATCGGTTTTGGACTCAAAATTTCCAGTTGAGAAATAGAGAAAACCAAGTACTTGAAGAGGACTCTTGGTATCCTATTACAGCAATCCATATTGAGCTTTTTTGTATACAATTAAGGAGAAAAAGGCCTAAGTAAAGATCTCGA | |||||||||
gi|164340061|gb|ES823304.1|ES823304 UFL_359_16 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): GGCACGAGCCAAACCTCTTCCTTCTATTTTTTCTCTTTCTCCTTTTCTGGGTTTTAAGCTCTAAATTATTAAAGGGAAAGAATGGATCATCTCGCCCATGTTTCTAACCAACCAAATTCTCAGCCCCAATCTCAAATTTCTCATTTGGCTCTCGACATTGGAGGTTCTTTGATCAAATTGGTGTATTTCTGTAGATATGATGATAATTGTAGAGATGATGATGAGCTAAGATCCCAAAATGAAAGCCTTGGTTCCGAAAGTGATAACAGCCGACCTGTTCTTGGAGGAAAACTTCATTTCGCAAAGTTTGAAACTAGCAAGATAAATGATTGCTTAGAGTTCATTCACTCCATGAAACTTCACCTTGGTGGTTTCCATGACTGCACTGCCCCTTCCAGTGACAAGATCTTCATAAAGGCAACAGGCGGTGGTGCCTACAAATTTGCTGACCTTTTCAAAGAAAAGCTCGGTGTCAGTCTTGACAAGGAAGATGAAATGGAGTGCCTTGTGACTGGTGCAAATTTTTTGCTTAAGGCAGTCCATCAAGAAGCTTTTACATACTTGGATGGTCAGAAGGAATTTGCTCAGATAGACCCTAATGATTTATATCCTTATCTTCTTGTTAACATCGGGTCTGGTGTTAGCATGAATAAGGTGGATGGAGAAGGCAAGTTTTGAGCGAAGTTAGTGGAACTAGCCTTGGAAGTGGCAACTTTTGGGGGTTTGGGAAGGCTTTTGACCAAATGCAAAATTTTGATGAATTACTGGAACTTAATCATCAGGGAAAAATAGAATTATAAATATGCTTGGTGGGGAAATCCTATGGGGGAAATGAATATGCAAAAAACGGTCTTTCTCGCAACAACAATTGCTCCAGCTTTGGCAAGGGCATTTTTAAAAAAAAGGGGTGGGGAAATTAAAAACCTGAAAAAATTTTCCCCCCCCTTTTTCAAAGGATTTCAAAAAAAATTGGGAAAAATATTTAATTGAAAGGGCCTTCGGGTTTGGCGCTTAAACGAAAATTTTTTTTTCGGGGGTTTTTTTTTTTTGGGGGGGCCTGGCCCTAATACAATGGGAAACAAATTTTCCCGCTCCCTGTGTTATTTTTTTGGGTCCAAAAAGGGGGAGAGGGGAAAAACAAAGTTTTTTTACCCGCGACGGGAAAGAGTTTTTTTTTTGTGGGGGCCCTAAGGGGGGGTTTATTCTTAGAATAAAATAAATAAAAAAAAAAAAGGAGGTTTTTTTTGGGGGCGGTTGTTGGGGTTTGGTAAAATAAAAAAATAAAAACCACCCCAAAAGAAAGAAGGCTCCTCCCCCCTCCCC | |||||||||
gi|109866055|gb|DW495031.1|DW495031 GH_RMIRS_105_E03_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): ATCAGGCAGAGGACGAGACAACGGTTGGTACAATGGCTAAAGTGGGCAAGAAATTGGAGATAAAAGTGAGGGCTTGAGGAATTGGCCATCTGGGTCTAACCTTGTCTGAGATTTTGCACATGGGTGCCACCAAAACAGCTCCTTGGAACCCATTTGGATCAGCAAAATGAACCAACAAACAAAGGGCACCACCCATTGATTCTCCATAAAGGAAACAAGGTAAAGCACCAAAGTTAGGATCTTGCTTGATGAGATTGAAGAAGGAGAGACAGTCTTGGACAACCAAATCAACATGTGGGACATAGCCTCTAAGGCCTTGAGACCTCCCATGGCCTTCCATGTCAAGGGCAAAGCAGGCAAACCCTTTCTGAGCAAGAAAGATTGATGTGGACTGGAAAGTCCAACTTATATCATTGCCATACCCATGGATCCCAAAGATGATGCCACGTGGGGGGCCAGAGAGTGGAAGCCATGATCTTGTGAAGAGAGAGAGGCCTCTTGTTGAAGTGTAGAACGATTTTGACCCTTTGATTCCTTGCAGCCTGTAATACTCTTCCTCTGAGATGTCGCCCCAGTAATGAAGGTTTTCTTCTTGTTCCACCATCCTTGGAGAAAAGATTGAGTAGATCAGATCGTTTTGGGCGTCTGCTTTTTTTTC | |||||||||
gi|164357386|gb|ES835258.1|ES835258 UFL_007_10 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): GGCACGAGGCGAGATCAAAAGCCAGCAGCGCAGCAGCTAAAAGAGCAGTCTTTTGACAATTATTCGCCATGGGTAAGGTTCACGGATCTCTAGCTCGTGCCGGGAAGGTGAGAGGCCAAACTCCTAAAGTGGCCAAGCAAGACAAGAAGAAGAAGCCCCGTGGCCGCGCTTACAAGCGGATGCAATACAACCGACGCTTCGTCACAGCAGTGGTTGGATTTGGCAAAAAGAGGGGACCTAACTCATCTGAGAAGTAAGAGATCTATGTAGGTGAAGAAGGCAAGAAGCCTTGTTGAAAGCTTTGATGGATTTTAAGTCTTTGTTTTCTTTTGATAATGTTTTTATGATATTGGTTTCAAGGATTGGATTGAACTGCCATTTTGTTTGCTAGATATTATGTGATATTGTTATCAATTATCTTAAAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|164320206|gb|ES792321.1|ES792321 UFL_472_21 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AGGAGATCAAAGCCAGCAGCGCAGCAGCTAAAAGAGCAGTCTTTTGACAATTATTCGCCATGGGTAAGGTTCACGGATCTCTAGCTCGTGCCGGGAAGGTGAGAGGCCAAATTCCTAAAGTGGCCAAGCAAGACAAGAAGAAGAAGCCCCGTGGCCGCGCTTACAAGCGGATGCAATACAACCGACGCTTCGTCACAGCAGTGGTTGGATTTGGCAAAGAGAGGGGACCTAACTCATCTGAAAAGTAAGAGATCTATGTAGGTGAAGAAGGCAAGAAGCCTTGTTGAAAGCTTTGATGGATTTTAAGTCTTTGTTTCTTTTGATAATGTTTTTATGA | |||||||||
gi|109885965|gb|DW514935.1|DW514935 GH_TMIRS_186_F11_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TCTTGCCTACTCCACCCAT EST sequence (targeted fragment marked with yellow): AAGATTATTTTTCTTTCCTTTTCTACTCATCTCACATCTCTTCACACTCCCACTCCCATCTGAGATTTTTTCAACAAATCTCAAAGATTATCGTGCGAATGTTTGGAGTAAGCAAGAAGAGGGGTTTGAAAGAACAACAGCAGCAGCCATGGTGAAGAAGATTAGCGTAACAAAGAAAGCCTTAATTCTAGGTTTAATCAAACCCTCAAGAATGTCCAAAGGCATCACAGGGGTTCAAAAAGGGTTACTCATTGTCTTTTAGCATAGAGGGAGAGGCCATGGATTTGGCATACTAAATAGTTGTATCTTCATATTAAGAAGTTTGAGAGGTGGGAGACGGTTAAAGTGGTAAAGGCAAGGAGAAATTTTGTGCTCGTAAGGAAGAATTCGAAACAAGCTCTCTCAAGGACAAACAGGAGTTCATAGATATTATTGGGACTGTATACGGTGAGGCAAGGAAAGGTCGTGGTTTGGTAATCGCTTCGAAAGATTACTTGACAAAGTACTGCTATTGAGTATTTTTCCAACCTGTAGTTGATCAGAATGTAGATTGTATGTAGATATGTGTGTCGTTTGCAATGCTTGGTTTCATGAATGTGGAGGATAATCCAATTTGAGATGAAACTTTGAAATATATATTTTATGTGCTCTTTTGATGCTTGTTTG | |||||||||