| mature miRNA: TCTTGCCTACTCCTCCCATT species: Populus nigra database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161922409|gb|DB888584.1|DB888584 DB888584 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GTATTGCAGGAACCTGCAAATCCTTATTTGCTTTTGAGATGCATGATGAATGTTTCAAACAAGAAGTGGAAAGGTTCAACCAGTAGAGAAAAGCTCTTATCATGAAGGGTGTCGGTCTTTCTGGGTGGAGGTGGGATCTCGCTGATATGGCAAAAGGGTATAGCTTTTTTTTGGTTCTAAGATGATTAATTAGATCTGCTCTTATACATCAATAATGAATAATTTTCCTTTTCGATCCAAGCATGATATAGTCCCACTTGACAGTAAATGATTGGTGTTGAATTATACTTTTGATACTGAAAATCTTGTTTGAGCATGTTCAAATTGATGATTTGCTTTTGTGTATGCATAGGGACGAATCAAAGTTTATCGAAGACGTGTTGAATAAATTGGATTGCAAATGCTTTCATGTTTCCAAGCACATGATAGGTGTTGATTCCGGTTTGTTACTAGAAATTGCTACGAAAGATGTTTACGTTGTGGGCATATATGGAATGGAAGGAGTGGGCAAGACACCTAAAACAGAGTCTGTATTTAACAGACTTTGTTAAATATTACAGGGAAGTTGCTTTCTTTNGAATGTTAAAGAAATCTCNAAACAATGGGAAGTTATGGTTCAATTACATGAATCACTTCTAAAATCAAATATTCTAAGGA | |||||||||
gi|161920642|gb|DB910431.1|DB910431 DB910431 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): GTCACCTGCAAAGTCAGCTGAGAAGTTAAATCCTGAACTGACAAGGTCACCTAGCAAAGCTGCTAGCATGTTTGCAGGGACACAAGAAAAGTGCGCTGCTTGCGGTAAAACTGCTAAACCGCTCGAGAAGGTAACAGTTGAAAGCCAAGCCTGGCACAAATCATGTTTCAAGTGCTCGCACGGTGGCTGTGCTATAACACCATCAAATTATGCAGCACTTGAGGGCGTATTGTATTGCAAGCATCACTAAGCCCAACTTTTCAAGGAAAAGGGCAGCTACAACCACCTCATCAAGTCCGCAACAATGAAGCGTGCAGCGGCTCGGGTGCCAGAGGCCTAAATATCTCCATTTGATATTTTATTTGTGTGGCTTTATCTACTTTTCATTGTGTTTTCCTTCCATGCCCTCCGATTTCCATTGGAAGGAGTAGGCAAAACTTGGTTCTGCCTTGTTTTTTTTCTCTCTTCCTTTCAGCCCAGCTATACTGGGCATGTTTGTTGTGTTTGATTGATAGATGGGTTTCAAATTCCCACAAATGTAAAATTACTTGCGGAGGAATTTCAATTGCAAATATTGGATTCTACTAGT | |||||||||
gi|161916516|gb|DB893031.1|DB893031 DB893031 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): ACCTTGCTCCTGTCTATGGTGTGTAATAGATGAGAGAAACGGAGAGTCCTAGCAAGTCTTTGGAGATGGGAGAGTATGCAAGAAGGAAAAATTCATGATTTAATATTCCTTCTTGCCTACTCCTCCCATTCCATCTGCTTTCTGCGACTCCTCTATTTCCTTATTCTAGACAAAAGCGTGATCTAAAATTAATCAAGGAGCAAGAGGGAAAGGAAAGAGGGTTGCTGGGAGTTACGGGTATGGGAGGATTGGACAGTACTGCTTGGTTTTAGTTAACCAAAGTCTGTTCTTTCCAACGCCTCCCATACCGGTGATCTCCAGCTGTTTCCTCCCTTTCCCTTGCTTGTCCTGCTTCAGATCCTTCAGTTCGGTAAGATCTGTCCTTGTATGCTTGTCGTTGGTCACATGATGATGGTGGTGATGCGTGCTCTTCTTTTGTTTTTGAAAAAGGAACATCATTTCGTTGACTTGTTAATCTTGCTTTTACGCGGGATATTGTTACATGTCTTGTATAATGATTTTTATTAGCCCTTTTTTATGCTCAGGTGACAAAAGCGAGTTGTTGGTTATGGAGTATCGTTGAAAAGATTAGAGGAAGTTTTGATCTGTTGGTAGATCTGAGTAAATCATTTGTCAATCCAGCTAGATTTAATATTAGCAACTG | |||||||||
gi|161926957|gb|DB894670.1|DB894670 DB894670 full-length enriched poplar cDNA library, mixture of leaf, bud, stem, root Populus TCTTGCCTACTCCTCCCATT EST sequence (targeted fragment marked with yellow): CCATGGGTTCGATGAACGGTTGGCGGGTCGGGGTCTGGTTATAAGAGGATGGGCTCTGTAGGTTAAGATACTGAGTCACAGAGCGGTTGGTTGGTTCTTGAGTCATTGTGGGTGGAACTCGATGCTAGAAGGGATAGTAGCTGGTGCGATGATACTGGCCTGGCCCATGGAAGCTGACCAGTTCATTGATGCTAGACTGTTGGTGGAGGAATTGGGAGCGGGAGTGGGGGCCTGTGAAGGGACAGCCACAGTGCCTGACTCGGAGGAGTTGGCAAGAGTGATAGGTGAGTCAATGAGTGAAAAAGGTGCGGGTGTGAAGATGAAGGCCAAGGAGCTGAGAAGGAAGGCATTGGAGGCCGTGAAAGAGGGTGGGAGCTCCTTGAATGACTTGAACGGGCTCATCGAGGAATTGTGCAAATTAAAAATCCAATAAAGAGGGGTGGTGGAATTATTGCATTGACTATTCCATGTAAGCTTTCTTCAAGTTCGTCGGCCACGTCTGGGATCCACAAGATTAGCATTTGGCTTTTGGGGTTGTCAAGGTACGATTGAGAAAGAAAAAAGACATTTTATATTAATGAAATTTCTAGATATTCACTCT | |||||||||