| mature miRNA: TCTTTCCCATTCCTCCCATCC species: Nuphar advena database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|31393832|gb|CD472564.1|CD472564 nad01-1ms6-d07 Nad01 Nuphar advena cDNA clone nad01-1ms6-d07 5', mRNA sequence TCTTTCCCATTCCTCCCATCC EST sequence (targeted fragment marked with yellow): GCCGAATTCGGCACGAGGCTTACCCTCCGTTTCTTTATCTTTTTCGTTTTCTTACTCCGCCGTTAGGGTTAGGGCTTTTGTGTCGTATCAGCACATCATCCGACCCTCTCTCGATGGCTTCTGCGGATGTGGTCGAATACCGTTGCTTTGTAGGTGGCCTTGCTTGGGTCACGGATGATAGGAGCCTCGAGGAGCGCCTTCAGTTCCTTTGGGGAGGTCATCGAAACCAACGTTTGGTTACTTCCTTTCATCTCCTGATTCCATACGAGGACCTTTCTCAACCCTCTTTTGACTGATCCGTGGTTATAGTCATCCTTGTCTTTTGGTTTGCAGGTCATCAGCGACCGTGAGACGGGTAGATCCAGGTGCTTTGGTTTCGTCACCTTCAGCGATGAACAATCGATGCGCGATGCCATCGAGGGGATGAATGGGAAAGAGCTTCACGGTAAGAAACATAACCGTTAATGAAGCCCAGACCCGTGGCGGTGGTGGATTTCGCAGTGGTGGTGGTGGC | |||||||||
gi|164500560|gb|FD382801.1|FD382801 Nad03b_84_C02_C005.g1 Nuphar advena flower bud library (Wash U) Nuphar advena cDNA clone 122 TCTTTCCCATTCCTCCCATCC EST sequence (targeted fragment marked with yellow): ATCCCAGACCCTCTCTCGATGGCTTCTGCGGATGAGGTCGAATACCCTTGCTTTGTAGGTGGCCTTGCTTGGGTCACGGATGAAAGGAGCCTCGAGGAGGCCTTCAGTTCTTTTGGGGAGGTCATCGAATCCTAGGTTATCATCGACCGTGAGACGGGTAGATCCAGGGGATTCGGTTTCGTCACCTTCCGCAATGAACAATCGATGCGCGATGCCATCGAGGGGATGAATGGGAAGGAGCTTGACGGAAGAAACATAACCGTTAATGAAGCCCAGACCCGTGGCAGTGGAGGGTTTCGCAGCGGCGGCGGCGGCGGCTACGGCAGGAGAGTTGGTGGTGGAGGCTATGGCGGTGGAGGCGGCCGTCGCAATGATGGTGGGGGTTACAACAACCGTGGGGATGGCAGCCGCTATGGTGGCTCTGATGGTGGATTTTCGAGGGGTGGTGGCGCTTCCGATGGTCACTGGAGGAACTAGGGTTTGCTACTTATTTTGTTAGGTTAGGATGTCTGTCCGCGTCAATCAGTCTGTCCGTCCGTCTGCCGTTCCTTTGATCGTTATGTATTAGAGTGATGCTTTTCTGGTCTTTGATCATCGTCTTGTTATTTGCATGCGTGAACTTTT | |||||||||