miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse




mature miRNA: TCTTTCCTACTCCTCCCAT
species: Gossypium hirsutum
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|164364864|gb|ES802350.1|ES802350 UFL_536_92 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| ||| ||||||
AGAAAGGAAGAG-AGGGTA

EST sequence (targeted fragment marked with yellow):
GGCACGAGAGAACTCATTGAAATGGAGCAGTTATTTCTGATTTTCATTTCTGACCTTTGCTATCAGCAATGGCATCAAACATTCAATATCATCTCTCTCTTTTTTTCCCTTTTCTTTATTTTCCCATTTCTGTTTCCTATGAAGATGAAGAGGAAGAGGAAGAGGAAGAGCAGAAAAAAAAGGAGGCCCGGGGGGTTTGTTATGCTTTCCAGAGAGGTGAATGTACTCGCGGCGCTGGATGTAAATTTTCCCACAATGAGCAAAGAGCTGCCAATACTGGTTGGGGTCCTCAGGATAATAAAAGTTCAAGATGGGGAAATGACAAATACGAGGGTTCAAAAAAGAGCGACAAAAGTTCCGGCATGCAGGAGCATACAGTTCAAGAAGGTTTTCGATCATCAAGGGGTGATGAGAAGGCCTTAGAGAAAAGAGATGGGAGAGAAGGAAAGAGGTCTAGAAGGTACGATGGTAAAGATGCTGGACCAGCATCTAGAGAAGATTATAGTGGTATTGAAGGAAAGAGATTAACAAGGCATAATGATGATGATCGGTATAAAAGGGAAGAAAAAAGATCTAGAAGGCACAATGATAGCGATCTTGAGCCAAGGTCAGTAGAAGATCGTCATAGGAGAGATGAAAATAGATCAAGAAGGCATGGTGACGATGGAGAAGAGAGGGCTAGGCTCAAAGAAGATAGGAAGGACGAAAGTAGATCAAAAAGGCATGGTAATGATGAGTTTGATCCAAGGCCTAACGGAGACCATGACAGGAGAGGAGAAAAACGAATCTTAAAGAATGAATCAGAATCTCATCCAAGAGAAGAGCGTGATAAGAGAGGTGGGGAGAGACGGACAGGCTATAACAGGGATTCATCCTCCCATCGACATGGGGAGAGAAATAAAAACTTTAAAAAAACCAAACTTTGCTAAATTGGCCTGGATGTACCCCTAGCTTTGTTTCAATATCTGTATTTAAATAGTTCATGGGCGAATAAACAATTGGTGGTTATTTTTGAAGGAAAAAAAAAAAAAAAAAAACTCCAAAAGGATCTTCTAAAGCGGGCCCGCGGCCCCATCAATTTTCCCCCCCGGGGGGGGAACCCAGGAAAGGGTACCCCATTTCGCCCCCTATAAGGGGGCCGTAATTAAAAATTTTCCCGGGGGGCGGCGGTTTTTTTATAACCGCCGGGGGGGGCGGGGGAAAAAAAACCCGGGGGGGTGTATCCCCCCACCTTTTTAATCTCCCCCCTTGGTTGCGCAACAACAAACCCCCCCCCCCCCCTTTTTTTTCCCCC



gi|109857561|gb|DW486540.1|DW486540 GH_RMIRS_059_A02_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TCTTTCCTACTCCTCCCAT
|||||||| || ||| ||.
AGAAAGGAGGACGAGAGTG

EST sequence (targeted fragment marked with yellow):
TAAAATATTAAAAAACCTCTGAACTTTCTTATTTTAGGTTCCTTTGTTTTTCCTGTCCCAAATCGGCTCTAATTCTTTGATTTTCACCAAAATAAGAAGCTGGCTTTTGTTACCGTCTTCCGAATAGATTTTTTTTGCTCACATGGAAGTTTGACCTTACATGATGACGTGGCCTAGATTTGCAAATTTCCTCTCTTCATTTTTTATTGTCTCCAGATCCTTTTTTTCCCATGCCTCAACCCTCATTTCTTCTGACCATTGTCTGGTCAGATAAGCTGATCACACCAGATTTAGGGTCAGTAAGGCTGAAAACAGCCTCAAAACAGGTCAAAACGAACTGAAATAGGCTGGATCTAGCTAGAAATCCAGTTTCTTTTAGGTCATTCCGAGCAATTCAAGGCCATACTTGTCCTTACAATCTCGGATTTAGGGTATTGCATTCGCTGTTTGCTCCAGTCAAATACTGGTTGGACGAATCTGGGTTAAGGATTAAGAGTGAGAGCAGGAGGAAAGAGAGAAAGGAAGAAAGAACAAGGAGGGGAAAAAGAAGAAAAGAGATATTTTTTGTCCTTTTCCATCAAATGAATTATTTAATTTTCAATTTTTGGTTCATATCATTAGGCCATTTCAAAAATAAAATATTTTTTGTTTGTAAATGCCAGTTTTTCCACATCATCTAACATATCATCAAAGACAGAAAAATCCTGCAGGGATTGACTGTACCAAAAGTTTTAACCTTCCGGTTGCGATAAGGCTTATTTTAGTAAAAATCAAAGGAAATTGAGGGCAATTGGATAATGTTGAAAGCTTTTATAGCATTTTAGCATATTATTGG



gi|84164240|gb|DR452888.1|DR452888 CM007D09 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
.|||| |||||| |||||
GGAAACGATGAGAAGGGTC

EST sequence (targeted fragment marked with yellow):
AATTGATATAGGATGATAACTTTGTGAAGAAATGAAGAACACTGGGAAGAGTAGCAAAGGCAACGGAAAATCGTCGTCGTCGTCGGCGGATGCGAGGAAAGACAGGAAATCCGGTACCGGAATGAGTGGATCGCCTAAGAAAGGAGGTCACGGTGGCAAATACACTTGTGGCGGGAGATGGGCTTTCGCCGGCCGAGATCGGGTTTGAGAAAGAGGTTATTGATGTTAAGGATCCTAACTTTGAAGATGCCGATGAGATCGTGACCGTTTGATGGTGATCATCATCGACGATCATCGTTGCCTTTGAATTTTTTTTAATGATGATGATGATCGGATGTGTAAATTTATAGTTTTATCCCTGAAAATGAATAAATTTGTTGTAAACGCGATTTTCGTTTGTCGTGCTCCTTTGTTTGTTTGGTGATGTTGAATTTTAACCGAAAATCTTAGCATTCAAAAAAAAAAAAAAAAAA



gi|164340728|gb|ES821796.1|ES821796 UFL_323_80 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||||||||| |||
AGAAAGGATGAGGAAAGTA

EST sequence (targeted fragment marked with yellow):
GGCACGAGGCACTATCAACTTCCACAATGACACTCATGGCAACTATGTTAAATACTATACTTGCCGTATCAGAACGGGTCATGGATCTTGTGGTTTCTTGCTGTTCGACAGTCCTCCAAATTCATGGCCAAGGTCTCGACGACCAATATCGAGTCCACAGCACGGTGAGCCACCAGATACGATGAGTCACGAGGATGAATGTTCCATACCCTGTTTCTCTAACACAAACATCCTTGTTCATGAAGCCGAGACAAGCGATTTTGTTGTAGGGAAAGGGAACCGTGTTTCCCGTCTAATGTCTTGGTCTGATGTCCATTCCCGTCAAATAGAGTTCCAGAATCAGATATTTGCTGCTGGGAATTTACGAAATGGATGTAAAACTCGTCAAATTATGGGCCTTCGTGTTCATGGTTGGGTTGGAAGGCTTGCTTTTCCTCCTCCTCGGATCTTAGCAGATCTTCCTCTTGGGCATTTCTTTTGCTTTTCTGAATGTGCGGATATCTCTATTCGTGGAAGTTCAAGTATAATGCCTTGCACTTCTTCAAATGGTGAAGTTGATGAAGAATCACAAAATGCACTAAGGAATGATACTCAACTGTTGGCTGTTCCTTCGGGGACTTCAATCTGGAAAAGATCGTTCACTGCTATGCAAGATGTAGCAAATATAATGATGAAAGGAGTAGGAAAGAATCTGCAGAAAGACTGCAGTCTTTTGCTGTCAATGGAGGCAACAAAAGATGGTTTGGCTTTTGCTGAGCACGTGACGAAATCTATTCAGTATATTTCAAGAGTTACAGGAACGGAGTTGAACTGCAATCAGCAGGAGCCAACCATCCAAAAGAATATCGAAGAAGTCGGTAGCGATTATCTTNCATTGGTCCGTNCAGTGGCTTCTCATTTCGAGGAAATGCTCCATCAAATTGGGGAACTTGAATCGTTCCTTNGTAATATTACAAAGGATTTGGGGCATCAAAAGAGAATATGCTTGCTGCATGTCAACAACTCACAAATGCTTTTGAAACTTCCCAGGAAAAAAGTAAAGCAACCCCAGGGTGGGGGACAGCATTAAAATAAAAAATGCTCCCTTAAAAATGAAAAAATTTTAAAAAATAAAAAGGAAGAAGAAAAAAAAAAA



gi|78351629|gb|DT571903.1|DT571903 EST1082543 GH_TMO Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||.|||.||| | |||||
AGAGAGGGTGACGCGGGTA

EST sequence (targeted fragment marked with yellow):
GGATCTATAGCGGAAACAGAGAGTGTAGCTACAGGATTTGAGGATTATGGATCTATTGCGGAGAATTCGGAGGTTGTTACAGTTGCCGTTTCTCCGCCGGCAGTTGCAACATCTCCTGAAATTATGGAGAAAGGAAGCGTGTCGGTCTCGGAGGGGAATTTCGATAGAGCAAGTGTTGAGAATGGAAAAGAATTGGTCAATGGTGGCGGGAAGCAGAGTGGCGGCTCCAGCAGCGATTGGTGGTGGAAGCAAGATATGGGCGCAGTGGGAGAGAGTGGGAAAGTGAAGGGTTATGTGATGGAATGGATAGGAAGTGAGATTAAGAAAGAGAGACCCAGTAATGATTGGATTACTTCAGTGGCTTCTTCAAGCTATGAAATGAAAGCTAAATCGGGGG



gi|164253922|gb|ES845748.1|ES845748 UFL_125_91 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
.|||||||||| |||| |.
GGAAAGGATGATGAGGTTG

EST sequence (targeted fragment marked with yellow):
ATCAGATACAGGCTGTAATCAGCGCTGGCATTTTTGCCCCTCTAGTCCATCTACTTCAAAACGCAGAGTTTGAAATCAAGAAAGAAGCTGCTTGGGCAATTTCAAATGCTACCTCCGGCGGCACCCACGAACAGATAAAGTTCCTGGTGAGCCAAGGTTGCATTAAGCCATTGTGCGATCTTCTAAACTGTCCAGACCCAAGAATTGTGACAGTTTGTTTAGAAGGCCTTGAGAACATTCTGAAGGTTGGGGAAGCTGAGAAAAATTTGGGTCACACCGGAGAGGTCAATCTCTATGCCCAGTTAATTGATGATGCTGAGGGGTTGGAAAAGATTGAAAACCTCCAGAGTCATGACAACAATGAAATCTATGAGAAGGCGGTAAAGATTCTTGAAACATATTGGGTGGAAGAAGAAGATGAGCCATTACCCCCTGGTGATGCTTCTCAATCTGGGTTCCAATTCGGAGGCAATCAACTTCCTGTTCCTTCTGGTGGATTCAATTTCAGTTGAAGGACACATGGTTGGAGTAGTAGGAAAGGGGATTAAGGTCGGGTATTTTATCTCGGTGTTTGGTTTCGGTATTCACATACAGTTGAAGTGATGCCAAAGTGTGTGATTAAGAAGTCATCTCAATAAAGACGGGTGAATGACACACCATCATGGTAAAATTGTTCGAGGAGAGAGTGTCTGGTAAAACCGTTTAAATACTTAATTTTACTTCTCCATACGGGAAAATAAAAATTCTTTCACAGCATCCCTTGTTTACTGGGATGGCAAGGGTGGAAGTTTTATTTT



gi|164357317|gb|ES820706.1|ES820706 UFL_373_95 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||||||| || ||.
AGAAAGGATGAG-AGCGTG

EST sequence (targeted fragment marked with yellow):
GGCACGAGATTAGCCTCCCCCCTTTTGCTGTCCAGTTAACCCCCAGAATGCTCCTTTCTTCATCTATGCGCCACCATGAACGGCGATCCGCGCATTCGAACTCCAAAGGAGTGATTTTCAGCCTTGAGACCCCATTCGGACTTCGATTTCAACGAAGTGAAGGGGAAATGACAGCTAACTTACAAGGTACGGGCGCTGTGCTGACGTACGGGGGCTGTGCTGGCGCAGGCGTGGCTGTTGGAGGATACGGAGGCCAGGGCTGAGGCTTGGCTGCGGTGCGAGAGTAGGAAAGAGACCCTAGGGTTTCTTGTTCTAAAATTTCTGGGCCATTTAGGCCGATGTAATTTTGGGCCTTGGGTTAATTTGGGGATTGGGTTTGGGCCAAAGTCTGTAAAAGGATATTTACTGGACTGTTATAATTTTATTTGGGGTTTATGGTTTTTGGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAA



gi|73847052|gb|DT456072.1|DT456072 GH_ON11D03.f GH_ON Gossypium hirsutum cDNA clone GH_ON11D03 5', mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| ||| ||||||
AGAAAGGAAGAG-AGGGTA

EST sequence (targeted fragment marked with yellow):
GAACTAATGCTATTGTCCAATTGATTGTGTCATGCTTTGTTAATTTTGTAGTTGCATTTCGAGAAAAACTCCGTTTTTCCTCTGTTATTCTTCGTTCTTGGCTATCTTACTCTCTTGTGCCAGGGTTAGTGTCTTGAACGTTACATGTACAGAATGTAGTTTTCAATATACTATAAGCTCTGTGTGTACGACCTAGTCTTTTATGCTTCTGCTGTTTATATATTTTTCTGTTTTGTACCCAGAGAGCTGCCAATACTGGTTGGGGTCCTCAGGATAATAAAAGTTCAAGATGGGGAAATGACAAATACGAGGGTTCAAAAAAGAGTGACAAAAGTTCCTGCATGCAGGAGCATACAGTAGAGAAAAGAGATGGGAGAGAAGGAAAGAGGTCTAGAAGGTACGATGGTAAAGATGCTGGACCAGCATCTAGAGAAGATTGTAGTGGTATTGAAGGAAAGAGATTAACAAGGCATAATGATGATGATCGGTATAAAAGGGAAGAAAAAAGATCTAGATGGCACAATGATAGCGATCTCGAGCCAAGGTCAGTAGAAGATCGTCATAGGAGAGATGAAAATAGATCAAGAAGGCATGGTGACGAT



gi|164247237|gb|ES824341.1|ES824341 UFL_468_33 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| |||| | |||
AGAAAGGACGAGGCGAGTA

EST sequence (targeted fragment marked with yellow):
GGCACGAGAGAAAGTGCGAGAAAATGAGCGGAGCAGGAAAGAAAGTAGTATATGTGGCTTCAAAGCAGGAAAGAGCATTGATTGGGAAGGGATGGCGAAGCTTTTGGTCTCCGATGAGGCTCGCAAAGAGTTCGCCACTCTTCGTCGCACTTTCGATGAAGTTAACTCCACTTTACAGACCAAGTTCAGCCAGGAACCTGAGCCTATCGATTGGGAATATTATAGAAAAGGAATCGGCTCGCGATTGGTGGATATGTACAAAGAGGCTTATGAGAGCGTAGAGATCCCCAAGTTTGTTGACACAGTCACTCCTCAATTCAAACCGAAATTTGATGCATTGTTGGTTGAATTGAAAGAAGCAGAAGAGAATTCTTTGAAAGAGTCCGATCGTTTGGAGAAAGAAATTGCCGACGTTCAGGAACTGAAGCAAAAGATCAGCACCATGACAGCAGATGAGTACTTTGAGAAACATCCCGAACTGAAAAAGAATTTGATGATGAGATCCGCAATGACAATTGGGGCTATTGACACATGTTTGGTAATATAAGGGTCAGGCTATATAACAGTCCCAACCAGTATGTCTGAGTTGGTCTTATCATTTCTTACTGTTGTCTTAACCCCCNAATGATGATTACCGAAACTCTGTTATTTGGTGGTAATTTCATCCGGGAACTAATAATATGATAATTCACTTGAGAACCATAGTGGATACTGTAAGACATGCTTTTCATTCTAAGTGGCCTCAATGTTCATGGAGGAACATGCTTTTTACAAAAA



gi|164334317|gb|ES797435.1|ES797435 UFL_233_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|| ||||||||||.| ||
AGCAAGGATGAGGGGATTA

EST sequence (targeted fragment marked with yellow):
AAAGAATCGGCACGAGATTTCATTTAATCCTCATTGTGGTTCTCAATTTAGACCGAGCAACGATGAGAAGATGATCGAGTTTAGAAATATTTTAGCAGAAGGTGGTTGCATTGTTTTTATGCGCTTCAGTAGAGGTGATGATCAGATGGCTGCCTGTGGTCAGCTGGGGAATCCCGGATCAAGTCAAGCACCATTGCTCCGTGTTCCGGAGCCATTCCGGGTGGCTCTAAACTTGGGCGTGTGATTTCTTGGATTATAAACAATCTGGATTTGCTTAATCTTTCTTCAAAGATGAAACAAAAATGAGGGGATGGTAATCATTTCTCAAGCCTCAGATTAGGGGAGTAGGAACGAAGGCATGTTAGAGCCTGTTGTATTTTTTCTACTCTTCTTCTCGTCGTATACGAAGTGGATTGGTTTAATAAAATGTGCTTTTTCTTTATGGGGTTAAAAAAAAAAAAAAAAAAAA



gi|164250664|gb|EV486600.1|EV486600 103G06 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
.||||||| |||| |||||
GGAAAGGAAGAGGTGGGTA

EST sequence (targeted fragment marked with yellow):
AACGCCACTAGAGTTTAGTTTGATCAGCAACTCTCTGCTCTTCTTCTTCCTTAAACAAGCAAAAAAAAAAAATTATGGGTGGAGAAGGAAAGGTCTATACTTTGGCTGAGGTTTCTCAACACAACAATGCCAAAGACTGTTGGCTTATCATTGACGGGAAAGGTATATGATGTGACGAAATTCTTGGAGGATCATCCTGGTGGTGATGAGGTCCTGTTGTCTGCAACAGGGAAAGATGCAAGTGATGATTTTGAGGATGTTGGTCATAGTAGCAGTGCTCGGGCAATGATGGATGAATTTTACGTGGGCGACGTCGATACATCAACTATCCCAACTAAGACCAAGTACACCCCTCCCAAGCAGCCTCACTATGAGCAGGACAAGAACTCGGACTTCATTATAAAGCTTCTCCAATTC



gi|164286605|gb|ES816722.1|ES816722 UFL_278_06 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACT-CCTCCCAT
||||||||||| ||||||||
AGAAAGGATGATGGAGGGTA

EST sequence (targeted fragment marked with yellow):
GGGGAAAGGAAATTGGGTGTGAGTTAGTTGTAGAAGTTGGAGTAGGATAAGAATAAGGAGGAGATTGGTGGGGAAATGTAGATGAAATGTGTATTGTTGTATTAAAATTGAATAATGTGAGTGAAAGAAAAGGATGAGGAGGTAGGAAAGTGAAGAGTGGGGGGTGTGAATAGGGTGTGAGGGGAGTGATGAGAAAGAGATGGGAGAAGATGTTAAGAGAGGTAAGAAGATATGAATGTGTGTGTAGTTATTTTATTGTGTAGTTTAGTGAAGAGTGGGTGATGATATGAAGAATATGGGAAGTGATAAGGAATGAAGAGGGTATAAAGGTGATGAGTGTGAGAAATGAGAAAGGAGAATTGTGGGTGATGAGGTAGATAATGTAGGATGGTTGAGAAGAGTTGGTGAGGGATGGTAGTGGTGGTAAGAGAAGGAGGAAGGAGGAGGATGAGGTTGTGGTGGAGTGTAATGATAATAGAAAGTGTAGTTTGGTGGATGAGGGTGGGAGGTAATTGAATTAAGGTAGGTGAGTATAGGTTTGTAGGTGATGTGGAGAAAGGTTTAGTGAAGGAAATGTATGTATTGTGGGGTGTTGGTGGGGGATGGGTGGGTTGGGAAGGTGGTGTGTTGTGTTGGGTGTGAGGTTATTGATGGATGAAAGGTAGTAATTATCAGAGTGTTTAAAATATAGAGTATTAGTAATATGATTGATTAGATGATAGGTGTTATGGGATGTTGAGAAGTTGGTGAATTTTATTGTGATAGTGGGTGATGGGAGGTAGTAGGAAAGAATTGGTAGTGTTGAGTTGTTTGGTGATGTTAATGGATAATGTGTGATTGAGAATATATAGAGTGGGGGGAGTCTATTAGTTTGTAAAATAGTGGATTTATGAGAGAAGTAGATAATGATTAGTGTTATGGAATGTGTTAAGGTAATGAAGTAGATAATAGAGAAAATGTAATGTAAGGTAGGGGTATTATAATAGTGCTACCCGTTATGCGCCACACTTACACACGCGCT



gi|164270958|gb|ES800001.1|ES800001 UFL_498_52 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| |||||||| .
AGAAAGGAGGAGGAGGGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGATTTGTCTCAAACCCTAACCAAAGGCAAAAGGAAAAAAAATGGCAGAAAGAGGCGGAGGTGAACGCGGCGCTTTCAGGCGTGGCTTTGGTGGTGGTAGAGGTGACCGTGGTCCAAGAGGCAGGCGCCGCGGCCGCAAGGACGAAGAGGAAAAATGGGTACCCGTCACGAAACTCGGCCGCTTAGTCAAAGCCGGCAAGATCACATCCCTTGAGCAAATCTACCTCCATTCTCTCCCTATCAAGGAGTACCAAATCATCGACCAACTCGTCGGCCCTTCACTGAAAGACGAGGTCATGAAGATCACTCCAGTTCAGAAACAAACTCGCGCCGGTCAGCGTACGCGCTTCAAGGCCTTCGTCGTCGTCGGTGACGGAAATGGACACGTTGGACTCGGTGTCAAATGTAGCAAAGAAGTTGCGACGGCTATAAGAGGGGCGATCATATTGGCTAAGTTGTCAGTGATACCGGTTAGAAGAGGTTACTGGGGAAATAAGATCGGAAAACCCCATACTGTTCCATGCAAGGTTACCGGGAAATGTGGGTCCGTCACCGTTAGGATGGTGCCGGCTCCTAGAGGTGCTGGTATTGTGGCTGCTAGGGTTCCCAAAAAGGTGCTTCAGTTTGCTGGAATTGAAGATGTCTTCACTTCTTCAAGGGGTTCAACCAAAACTCTTGGAAACTTTGTCAAGGGCACCTTTGAATGTCTTCTGAAAACATATGGTTTCTTGACACCGGATTTCTGGAGAGAGACTCGTTTCACCAGGTCTCCATTCCAGGAGTATACTGATCTGGTGGGAAAGCCATCGAAGACCCTTGTACTGGAAGATGTCAAGAGAGTTGATATCTGAATTGAAATCAACAGTGTCATTACTTATTAGTAAGTTGGAAGGGGGGCTAGGGTCTTTCGAATGTGGGATCTTTACTTGGGGCCTTGGCTGGTTTGGATTTTGGCTGGGAAGAAATACGGGATGGGGTCATTTTGTTGGGTTTTTCAACGGGGATCCTTAAAAGAATGGTGGGGGAAGTTGAGGACTGGGCTTTTTTAAAAAAAAAAAAGGAAAAAAAAACAGGGGGGAACTTGCCGGAGGGGGGGGCGGGGGCGCCCCGGGTTTTGCCCCCGCGGGGGGGGGGGGAGCGGGGGAGGGGGGGCCCCGCGGTCGCCCCCGCAGGGGGGAGGAGGAGGAAAGACTTGCCCAGGGGGGGCGGCGTTGTCGACCAAGTGCGGGGGGGGGGGGGGGGGAGAAGACGGGGGGG



gi|164369652|gb|ES827295.1|ES827295 UFL_336_31 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|| ||||||||||||| .
AGTAAGGATGAGGAGGTCG

EST sequence (targeted fragment marked with yellow):
GGCACGAGCCGGTACGAGGTGCAAATCTTCTTGGTTATGCCTATGGAACAGCTAGAGGAATGGCTCCTGGTGCAAGAATTGCAGCCTACAAGGTTTGCTGGACTGGTGGATGCTTCAGCTCGGATATTCTGTCAGCGGTTGATAGAGCGGTGGGTGATGGAGTGAATGTGTTGTCGATATCTTTGGGTGGTGGAGCTTTATCTTACTCTCACGACAGTTTGGCTATAGCAACTTTTGGAGCAATGGAGATGGGTGTTTTTGTCTCTTGCTCAGCTGGCAATGGAGGACCAGATCCTGTCAGCCTCACTAATGTACCACCATGGATCACTACAGTCGGTGCTAGCACCATGGATAGAGATTTTCCAGGTAATGTTAAGCTAGGGAGTGGGAGAACCATACCTGGAGTTTCACTCTACAAAGGGCGAAGGTTACTGCAGGCAAACAAGCAATACCCTCTTGTTTATATGGGTAGTAACTCAAGCAGCCCTAATCCAAGTTCATTATGCTTAGAGGGAACTTTGGATCCACATGTTGTTTCTGGGAAAATTGTGATATGTGATCGAGGAATAAGTCCTAGAGTGCAAAAGGGTCAAGTAGTGAAAGATGCTGGAGGAGTAGGAATGATTTTGACAAACACTGCAGCNAATGGGGAGGAGCTTGTTGCAGATTGTCACCTACTTCCAGCAGTTGCAGTGGGAGAGATGGAAGGGGAAAGCAATCAAAACTTTATGGCTTTAACAAAATAGGAAAACCAACCGCAAACTCTAGCCTTTTTTAGGTTACCAGAATTGG



gi|164308395|gb|ES838879.1|ES838879 UFL_048_17 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| ||| .||||
AGAAAGGAGGAGAGGGGTT

EST sequence (targeted fragment marked with yellow):
GGGGGCCCCGCGGCGGCGGGCCCACCTGGGTGAATCCAATTTATTCGGGCAGGAGATATGATCCACACCTTTATGAGCCTCTTCTTTATCCCAATCTCTTGTCACAATGTGCGCGGAAAGGGAACGTCCTATGAGAATACGACGATAGTTGTTCAGAGTTATCTAGATGGGTTGATAGCTAAATATCCTTAGTGGAATAGAACACTAGGTGCCGATAATTTCGTCGGGAGTTGGCATGATGTCTCTGTTCGTGGCAACGGAAGGGGTTCCATTTCTTGTAAAGAACGCCATTCGGGTTGGTTGTTCTCCTAGCTATGGTGTTTGGGTAATGCCACAGAGAGATGGTCCTCTCCCGCCGGTTTTGCGGCCCTATGCTCTTCCTGCGAGGTGGAAATGGAGGGTGATAACTAGGAAGGCACAGGGAGTATTGGTTTGGTCAGAGGGATGCGGGGAGGAGGGGGCAGAGACTAGCCCGCGATTGGGGAGAGGAGGAAAGAAGATAAGAGGAGCGAAAGAAGAGAGACGGGCCAGGGGCTGCAGGGAGCAGGGAGAACCACAGGAGAAGCTCATGGAGAAAATAGTTGACGGGTTGTGGCATGGGAGAGTTAGAGTGTCCGGAGGGGATCGAAGAGAGGAAGCCACGCCAAGGATGGACAGGGTGGACGGGAAGGGAGGAGCGGTTATAGGGGAACTTGGCAACCCAGGCGAGGTGGCCCAATCCGGGACCGGATTGCAGAGAGACTACCCGCGTGGGGGGGGTGGAGATGTGCGGTCACGGGGGATGAATAGCAGGAGAAGAGGTGAACACCCAGGGAGGAGCACCGGGAGCGAGCGTGCGAAAAGATGAGTGATGGG



gi|5048010|gb|AI729158.1|AI729158 BNLGHi12821 Six-day Cotton fiber Gossypium hirsutum cDNA 5' similar to cytochrome b5 - common

TCTTTCCTACTCCTCCCAT
.||||||| |||| |||||
GGAAAGGAAGAGGTGGGTA

EST sequence (targeted fragment marked with yellow):
CTACTGGGTTCAAAACCCAATACACACGGACAGTGGCACTGGCAACCACACGACAGCAGTCATATCAGCAAATCTCTGCTCTTTTTTCCTCCAACAAGCAAAAAGAAAAATGAAAATGGGTGGAGAAGGAAAGGTCTATACTTTANCACAGTTTTCTCAACACAACAATGCTAAAGACTGTTGGCTTCTCATTGGGGGCAAGGTATACAATGTGACTAAATTCTTGGAGGACCATCCTGGTGGTGATGAAGTCTTGTTGTCTGCAAGTGGGAAGGATGCTACCGATGATTTCGAGGATGTTGGTCATAGCAGCAGTGCTAGACCAATGTTGGATGAGTTGTACGTGGGTGATATCGATGCATCAACCATTCCCACCAAGACAAACTACACTCCTCCGAACCAGCCCCACTATGATCAACATAAGACCTCGGAATTCGTTGTTAAGCTTCTCCAATTCCTTGTTCCGCTCCTAATCTTGGGATTGGCATTCCGTATCTCCTTCAATACCAAATCACCAGCTTATCCATCTACATCATTTTATAATCTGGCTATATTCTCTCCAATAAGGTTATTTGGGTCAAATTTTCCACAATTCTTCCCTATCGTGTCTTCCCCC



gi|109852989|gb|DW481968.1|DW481968 GH_RMIRS_033_G11_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TCTTTCCTACTCCTCCCAT
|||.|||.||| |||| ||
AGAGAGGGTGAAGAGGCTA

EST sequence (targeted fragment marked with yellow):
ATCAGGCAGAGGACGAGACAAATGTAGTTTTGAAACTCTTGGGTCGAAGTATTGGATACAATGCTATTCACAATAGGATTAGTAGCCTTTGGAAGCTGTCAAAACCATTTCAGCTCATGGATTTTGAAAACGGCTATTACTTGGTTAAGTTTTAGTGTTTCGATGACTATGAGAAAGTTCTAACGCAAGGGCCATGGAGTATATATGGCCAGTACCCTACGATTCAGCCATGGACCAAAGGTTTCTCCCCACTACAACCATACCCGAGCGTGGTTATGGCTTGGATCAGATTGTCGGGTCTTCCAAGATTTATGTACAAGAAGGGGATCCTTGAGGCGATTAGAGGCTTGATATGCAAAGTTGCAAATTTTGATTTTAAAACTTATAGTAGAACTTGAGGTCGCTTTGCCAGAATGGCGATAGTCATCAACCTCAATAAGCCATGGAGTACGTGTCCCTCCCAACGATATGCTTCTCTTGAGACAAGTACGGGCATGTTAAAGAGCTTTCCCTATTGCATCCCATTGATCCCATCTGTGAAAGGGGAAAAGAGGAAGCTATTATTAAGCTAAAAGAAGCTGGAATCGGAGAAGTGGGAGAGATCGGAACATCGTACGGGCCATGGATGATGGTGGAGCAAAAATTTGAGCGTGAAAGGAGTGATTTACGGGGTGCCAAGGATAAGACGATTGGAACGACATCCACAGGTTCAAGATTT



gi|164362159|gb|ES816494.1|ES816494 UFL_308_24 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
| |||||||||||| |||
CGTAAGGATGAGGAGTGTA

EST sequence (targeted fragment marked with yellow):
ACCAATCCANTATAAAGAGTAAGACAATGATCGGTTTCCCTTTTGTACAGAAGGATACTAGCACCCTAACGAAGGAGTGGGTCTAGTTGCAATTGCAGNNCAAAACCGCAGCTGTAGCGAAAGAGTCCATAGGAGGTCGATGAGGCGGCTACCCAAGAGAGGAGAGTAAGGGTGTCGTANGAGGACCTGCGCCGAAAGAATAGAGATTGTGTGGGACAAGACATCGATGAGATAGATCAGGGAAGAGTACACCCTAAGCTCTAGTACGAGGANAGCTACCGGCAAGCGTGTCTCGACAAACAACTACGCTGATGAGACACACGCGAAGTATTTGCTAGTGAAGNATTGGGAGAACACGGTAGACGTATCGTTCTTACGAGAAGTGCCAACACCGTGAAGGTCGATATCAATGTACTCATTGTCATATCTCCTGAGCATATTACCGCGCAGGCGAACATCTTGGGATAGATGTAGATGTAGTAATCAGTGAGACAGAACTCAAGCTNTAGAAGTGTGTATTAGCCGATAGAATAAGGTATTAAGCGTATCTAAGATAACGACATGGTACTGACTAAGACTAGAGACGGGGGATGTGAGGAGTAGGAATGCTGAGGACGCACGGAATACGACNTGAATGCGACGACAATAGAGTTACTGCTCTACTAGGACANTGAATGGTGTATATGAGTGATAATCAAGATAGCACAGTTATAATATGGCGCTGGACGACTGATAANCAGGTCGAACGACGACAACACGAATGAGCACAGCAGNCGACAGCACATGNCATGCCGTTGACGGCGCGCGACATGGACGACAGATGCCATGTCNGTCTACATACTGCGAGACCTCACCTGCATCTGATCGACACGCCTCGCTATTAGTCNGACTGCTAGCATTGAGTGTTGTGAGTGTGTGCGCGGTTGAGTGCGGTCATGTAGGCTGGTCCATGGGGCTGTGAGTGATAGTGAGCTGGAGTTGTGTTTAGTCTGCTTNTATGAAANAATACTGAAGACGAGGTGAAACTAAATTGCACACGTGATGTGAATGTGGTGGAATGAGATCTGCTGATGTACGTTGCTAGACTGAATGCACAANTGAGTATGCTCNGTATAGCACATATAGTCGTGTATGAACAGTGTAGAGAGCTCACATGTGCAAGTACCGAATGGACGGTAATATCGACTNCNGNCGCATCGTCTCGTGGTACGTGCAANAGCGCTCTGGCCATCAACACTAGTATAGCTATGCGGATGTGCTTGTACACGTGAGGATTGAGTTNAGCTGGATGATGGAGATGCGAC



gi|109849340|gb|DW478319.1|DW478319 GH_RMIRS_013_E09_071_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA

TCTTTCCTACTCCTCCCAT
|||||||| || ||| ||.
AGAAAGGAGGACGAGAGTG

EST sequence (targeted fragment marked with yellow):
TAAAATATTAAAAAACCTCTGAACTTTCTTATTTTAGGTTCCTTTGTTTTTCCTGTCCCAAATCGGCTCTAATTCTTTGATTTTCACCAAAATAAGAAGCTGGCTTTTGTTACCGTCTTCCGAATAGATTTTTTTTGCTCACATGGAAGTTTGACCTTACATGATGACGTGGCCTAGATTTGCAAATTTCCTCTCTTCATTTTTTATTGTCTCCAGATCCTTTTTTTCCCATGCCTCAACCCTCATTTCTTCTGACCATTGCCAGGTCAGATAAGCTGATCACACCAGATTTAGGGTCAGTAAGGCTGAAAACAGCCTCAAAACAGGTCAAAACGAACTGAAATAGGCTGGATCTAGCTAGAAATCCAGTTTCTTTTAGGTCATTCCGAGCAATTCAAGGCCATACTTGTCCTTACAATCTCGGATTTAGGGTATTGCATTCGCTGTTTGCTCCAGTCAAATACTGGTTGGACGAATCTGGGTTAAGGATTAAGAGTGAGAGCAGGAGGAAAGAGAGAAAGGAAGAAAGAACAAGGAGGGAAAAAAGAAGAAAAGAGACATTTTTTGTCCTTTTCCATCAAATGAATTATTTAATTTTCAATTTTTGGTTCATATCATTAGGCCATTTCAAAAATAAAATATTTTTTGTTTGTAAATGCCAGTTTTTCCACATCATCTAACATATCATCAAAGACAGAAAAATCCTGCAGGGATTGACTGTACCAAAAGTTTTAACTTTCCGGTTGCGATAAGGCTTATTTTAGTAAAAATCAAAGGAAATTGAGGGCAATTGGATAATGTTGAAGGCTTTTATAGCATTTTAGCATATTATTGGGAGTCATGTTCCAGTAGCTGTTTGTCTCGTCCTCTGCCTG



gi|164316852|gb|ES821278.1|ES821278 UFL_367_54 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| |||| | |||
AGAAAGGACGAGGCGAGTA

EST sequence (targeted fragment marked with yellow):
GGCACGAGAAAAAGTTGTGTGAGAAAAAAATATTACGTTATGGGAAGCGAGAAAGTGCGAGAAAATGAGCGGAGCAGGAAAGAAAGTAGTGGATGTGGCTTTCAAAGCAGGAAAGAGCATTGATTGGGAAGGGATGGCGAAGCTTTTGGTCTCCGATGAGGCTCGCAAAGAGTTCGCCACTCTTCGTCGCACTTTCGATGAAGTTAACTCCACTTTGCAGACCAAGTTCAGTCAGGAACCTGAGCCTATCGATTGGGAATATTATAGAAAAGGAATCGGCTCGCGATTGGTGGATATGTACAAAGAGGCTTATGAGAGCGTAGAGATCCCCAAGTTTGTTGACACAGTCACTCCTCAATTCAAACCGAAATTTGATGCATTGTTGGTTGAATTGAAAGAAGCAGAGGAGAAATCTTTGAAAGAGTCCGAGCGTTTGGAGAAAGAAATTGCCGACGTTCAGGAACTGAAGCAAAAGATCAGCACCATGACAGCAGATGAGTACTTTGAGAAACATCCCGAACTGAAAAAGAAATTCGATGATGAGATCCGCAATGACAATTGGGGCTATTGACATGTTTGGTAATATAAGGGTCAGGCTATAAAACAGTCCCAACCAGTATTTCTGAGTTGGTCTTATTATTTCTTTTGTTGTTTTAACCCCAAATGATGATTACCGAAACTCTGTTTTTTGTGGTAATTTCATCGGGAACTAATAATATTATAATTCACTTGAGAACCAAAGTGGATATTGCAAGACATGCTTTTCATTTAAGTGGCATCCATGTTCATGAGGAACATTCTTTTATTTCATCTGCCTCATTTGGGATGTGCAAAGCTAATGAATAAATCCTTATTTTTTAAGTGGAAAAAAAAAAAACAAAAAAAAAAAACTCGAGCAAAAATGAAATCCAGCTTTGGGTCCCTGGGCTAAATCCTTGAAACGGGGTCGGGCGGCCATCCCCCACTTTCCACTGGCTTAACCCGGCGAAGGGGAAAGGGAAAATGGGCCCTGGGGGAATTGCTAAAAAGGCCACTCAAATTGCCCGGTTTTTCCTTTTGTCTGGGGAACGGAAGCTTATTTGGAAGAAAAGGGATGGTTGGGGGGGATAAAAAAAAAACTCGGAGAAAAAGCCCAACACTTTCCGGGTGCGAAACCCCAAAAAAAATACCACGGGGAAAAAATTCTCGGGCGCGTTAATTTTTGGGAAAAAGGAGAGGAAAAAATAAACAAACTAGGGGGCCCCCGAGGGGGAGGGAGGGGGGGGTTGGGTGGCTCAAAA



gi|164344806|gb|ES807911.1|ES807911 UFL_645_08 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||.|||| ||| |
AGAAAGGGTGAGAAGGAAA

EST sequence (targeted fragment marked with yellow):
GAATTTTCGGGCACGAGGGGGAAGTTGTGAGTCTCTTATAAGGGGGTAATTTTTNTGGTTCTTGTNTGTTNAATTTTTAATAAAAGGATATACNTTTGGTNANNGAGNTGAGAGGGAGAAAAGNTAGTGGGTTTAATAAAAAAGGTTTAGATTTTAAAAGAGGANGNGNNNTGGGANGNNNAGANGAAANNTTTGAGGGGAGGAGGGANTGGNNNAAGNNAGGNAGAGGGAGGAANAGGANAGGAANNAGAGGNAGGAGGGAAGAAAGGGGATTGGGGGAAGAAGAGAATTGGTAANGTTGTATTTGAATATGATTATTGTAATTATGTAAAGGATATTGTTGAATTTTTGTGATGGAGAAATTGGTTTTTTTTTTTTTTNAANAGAGAAGAGGAGGGAAGGGAGCAAAGGTGTTGGGGGGGAGAAGGAACCAGGGGGAAAGAAGGGAAAGAGGAAAAAGGGAANAGGAGAAGAGGGGGGGGGGGGGGAGGGGANGAGGANGNANAAGAGGGAGGGGGGAGGGAGAGAAAGGGGAAAAAGGAAAGAGGAAAAAAAGGAAGAGGGAGAAGGGGAAGAGAAAGGGGGAAGAAGAAGGAGAGGGAAGGAGGGAAAGGGAAGGAAGGGGGGGAGAGGAGGAGAGAGGAGGGGGGGGGCAAAAGAAATGAAAGGAAGAGTGGGAAAGAAGAAGAAGGAAGGAAGGAAAACGAAGCAGTGAAATATTGAGGGAGGCAGAGTTGAATAAGTTGAGATGTTGAGATGGTGTGATTTTTTGTTTTTTAAGGGGTGGAGAAAAATATATTTTTGAAGATGATTGAGGGTATGAAGGTGGAGGAAAGGGTAAAAAGATAATGGGTAGTTTCTGTTTAAAGTTTTTGGGGGGTTAAATGGTGGTTAGAAGTTAAAATTTTTTTTTAAATGGGTGGGGTTTAAGTAATGGGTGTTTTTTTTTTGTATTTTAGGGGTTTGGTAAAGAGATGGTGGGATTTTTTTTTGTTAATTTGAGTGAGGTTATGGTTTTTATGTTTGGTTTAGGGGGATTGGGGGTTTGGTTTTTTTTAGTGTTGGAAGGATTTGTTTTAAAAGAGAGAGAGGAGGAAAGAGGGGAGAGTTGTGTGTAAGTATTT



gi|164358384|gb|ES828866.1|ES828866 UFL_266_65 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| ||||||| ||
AGAAAGGAGGAGGAGG-TA

EST sequence (targeted fragment marked with yellow):
GGCACGAGTATTGATCCTCTTGATGGTCTTGGAAAATCTGTACCGCTCGGATCATCTGAGATCAATAAGAGAGGGAAGGATAGGAGTCCTTTAAGCACTGATAGCGGACAAGAAGCTCCTGTTACTAAAGAGCAAAATCATAGGGATTATGAGAACCATAGAAAGAAGAGGATGCCTTCTATGGACAATTTTCTTGACTCTCATCAACCCATGTTTGACTTGCCCAGTCTGTCAACTGATTTTCATAGCTCTGTTGGTCGAGCTACTAGCCCTCCCCCATACATGAACGTCGATTCTAATGAGACTAGTTCCCAGGTACATTCAACTCCCAGATCTGAGGTGAATTTTGATGCATCTGATGATGTTTGGCTCACTGTATCAGAGATTCCACTCTTTACACAACCTACTACTGCTCCACCCCCTTCAAGACCCCCTCCTTCAAGACCACCACGAGTTTCAAAGACAACGGCAGGCTCATTTTCTTCCACAAATGCAAAAATGAAGGTAGATGATTTTTCTTCTTTCCAGAATTCAACTCAGTACTCACAACGGAGCTCCCAGTCAACTCGTGCTGCAGCAAACTGCTCTGTTACATCTCAAATTGATGAACTTGAAGAGTTTGCAATGGGTAGGGCCTGGAATAATGTTGAACAAGCTGAAGGTTTTCCTGTTGATGATTTTGAGACTAGTTCTGTAGCTGCTGCTTCTGCTGCTGCCATGAAAGAGGCAATGGATAGAGCAGAGGCTAAATTTAGGCATGCNAAGGAAATGAGGGAGAGAGAAAATTTTAAGGCTGCCAGAACTAAAGAAGCTGATCAAATGGATAAAGATGAGAGAGATACGCAAGATGCTTTTGATAGAGAAAAGCAAGAGAGATTGGAGCGCGAGAGGCAACAAAGAGAAATGGAGGAGGAGGAAAGAGAGCAAGGAGACATGAAATGGAGAGGGAAAGGGAGGAGAGGAGGAGAAAACAAGAAGCCNTTGAAAAAGAGAGGGAGAAGGTCAGGGAAAATGGAAAGGGAAAGGGAAAGGGCTAGACAAACTGTTGAAAGGGCTACTAAAAAAACCCCGTGAAAAAACCAACTTGCTGAAGGCTTCGGGCTAAAAAATTTGAAAGGGGTTGGCTTGTTTGAAAAAGGGCCAGCCCTCCTTGAAAACTTCCGAGAGAGGTGTGGGGGAAAGAGAGGCTTGGCAGTGGGACAAAAAAAGGGCCAAAAACTTGAAAACACCCCGCTCTAGAAGGGGGCGCACCCCGTTCGCGCCGGGGCGCTTTATAAAATAAAAGAAAAAAAAAAAAAAAAAAAAAAACCCCCTCCCCCCCCCAAACAAAAACACACAGAGGG



gi|164328138|gb|ES813184.1|ES813184 UFL_316_19 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
.||||||.|||||. |||
GGAAAGGGTGAGGGTTGTA

EST sequence (targeted fragment marked with yellow):
GGCACGAGGCCCTGGACTATGAGCAGGAACTGGAGACTGCGAAGAGCAGCTCATCTGTTGAGAAGAACTATGAGTTGCCTGACGGACAAGTCATTACTATTGGAGCTGAGAGATTCCGTTGCCCGGAAGTCCTCTTCCAGCCATCTTTCATCGGGATGGAAGCTGCTGGAATCCATGAAACTACCTACAACTCTATCATGAAGTGTGATGTGGATATCAGGAAGGATCTCTACGGTAACATTGTGCTCAGTGGGGGTTCAACCATGTTCCCTGGTATTGCAGACCGCATGAGCAAGGAGATCACTGCACTTGCTCCAAGCAGCATGAAGATTAAGGTCGTTGCACCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGATCTATCTTGGCATCACTCAGCACCTTCCAGCAGATGTGGATTTCCAAGGGTGAGTATGATGAATCCGGTCCATCCATTGTCCACAGGAAGTGCTTCTAAGTTTTGTAATTGCTTTTGATGGTGATCTACATTTTGCATTTAGTTGGCTTTTTTTGTGTGCGGTGTCAAGTGAACTCCAAAGTCTGGTTTATGTGNNGGGGAGTTGGGGATCATTGTAGGATGGTGTACTTGATATTGACGTATTAATATTTTAGCTTTTCAACGTATCACCCCATTAAGATGATGGGTCCTATGGAAATGGCGGGGGGCGGACATTGGTGGTTATTTCTTCCTAAAATCCTTCTTGAACCAGGTTGCGGCTTAAAGGATGTTGGGAGTGGGAAAGGGATTGGGGGGGGTTTTTTATTTTATTTTATTTAATTATTTAAAATTCCAAGGGGTTTTGAAAACATTTAAGGTTAAAAGCTATTAATGGGAGAGAATTTTTTTTTTGAAAAATTTAGGGGCAGTTTGGGGGGGCAAACTTTCAATGGGAAATTTAATTTTAAAAACCGGGGTTTGGGAAAATGGGGGTTCCCTTTTAGGGGTTTTGATTTATCCGGGTAAAAAACGGGTTTTAATTGGGGGGGGAAGGGGAAGGGCCCCCTTTGAAAAAAAAAAAAAAAAAAAAAACCTCCGAAGGGATCCTTTTTGGGAGCCGGCCGCGGGGGGCCCCTCCTATTTTTCCCCCCCCGGGGGGGGGGGTACCCGAGAGAAAAGGGGAGTCCCATATTTCCCCCCCCAAAATGGGGAGGTGCGGTATTAAAAAAAATTATCTGGGGGGGCGCGCCGGTTTTTTTTCAAAAGAGGGGGCGTGGGGAGGGGGGGAGAAAAA



gi|109887376|gb|DW516345.1|DW516345 GH_TMIRS_200_F11_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TCTTTCCTACTCCTCCCAT
.|||| |||||| |||||
GGAAACGATGAGAAGGGTC

EST sequence (targeted fragment marked with yellow):
CCAACTAAATCCGGAAATTGAATTGATATACGTTGATAACTTTGTGAAGAAATGAAGAACACTGGGAAGAGTAGCAAAGGCAACGGAAAATCGTCGTCGTCGTCGGCGGATGCGAGGAAAGACAGGAAATCCGGTACCGGAATGAGTGGATCGCCTAAGAAAGGAGGTCACGGTGGCAAATACACTTGGGCGGGAGATGGGCTTTCGCCGGCCGAGATCGGGTTTGAGAAAGAGGTTATTGATGTTAAGGATCCTAACTTTGAAGATGCCGATGAGATCGTGACCGTTTGATGGTGATCATCATCGACGATCATCGTTTGCCTTTGAGTTTTTTTTTATGATGATGATGATCGGATGTGTAAAT



gi|109825409|gb|DW224142.1|DW224142 GH_HYPS_01-01-06R_D08_InvR_14Apr04_058_F Stem - 7 weeks after planting Gossypium hirsutum cD

TCTTTCCTACTCCTCCCAT
|||||||| |||| | |||
AGAAAGGACGAGGCGAGTA

EST sequence (targeted fragment marked with yellow):
CGAGAAAGTGCGAGAAAATGAGCGGAGCAGGAAAGAAAGTAGTGGATGTGGCTTTCAAAGCAGGAAAGAGCATTGATTGGGAAGGGATGGCGAAGCTTTTGGTCTCCGATGAGGCTCGCAAAGAGTTCGCCACTCTTCGTCGCACTTTCGATGAAGTTAACTCCACTTTGCAGACCAAGTTCAGTCAGGAACCTGAGCCTATCGATTGGGAATATTATAGAAAAGGAATCGGCTCGCGATTGGTGGATATGTACAAAGAGGCTTATGAGAGCGTAGAGATCCCCAAGTTTGTTGACACAGTCACTCCTCAATTCAAACCGAAATTTGATGCATTGTTGGTTGAATTGAAAGAAGCAGAGGAGAAATCTTTGAAAGAGTCCGAGCGTTTGGAGAAAGAAATTGCCGACGTTCAGGAACTGAAGCAAAAGATCAGCACCATGACAGCAGATGAGTACTTTGAGAAACATCCCGAACTGAAAAAGAAATTCGATGATGAGATCCGCAATGACAATTGGGGCTATTGACATGTTTGGTAATATAAGGGTCAGGCTATAAAACAGTCCCAACCAGTATTTCTGAGTTGGTCTTATTATTTCTTTTGTTGTTTTAACCCCAAATGATGATTACCGAAACTCTGTTTTTTGTGGTAATTTCATCGGGAACTAATAATATTATAATTCACTTGAGAACCAAAGTGGATATTGCAAGACATGCTTTTCATTTAAGTGGCATCCATC



gi|164363001|gb|ES810568.1|ES810568 UFL_268_51 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
||.||||.||| |.||| |
AGGAAGGGTGAAGGGGGCA

EST sequence (targeted fragment marked with yellow):
GGCACGAGGCCGCCTCCTCGTCTCGCTTCACGACAAGTCCCAGTTTCATTTTTAATTATTGTTTTCACATCCATTTTCACTAAGCTATATATATCGGTAGTTTTCTGGGAATTTGAGCTATTGATTTTTGCGTTGAATATGGATTGTGAAATGGAGAAAAATTCCCACGATGGGGTTGTCGTTAACGGAGGAAACGACGGCGTGCTGGGCCTACATTCCAAGAAGAAGAAGGTCATTATTGATACCGATCCAGGGATTGATGATAGCATGGCAATCTTAATGGCATTCCAAAATCCGGAGGTGGATATCTTAGGTTTGTCGACTGTATTTGGAAATGTTAGAACGGAAAATGCCACTCGTAATGCCTTACTTCTGTGTGAGATCGCAGGGTGTCCAAGTGTTCCTGTAGCTGAAGGCAGCCACGAACCTCTTAAGGGTGGGAGGCCACGAGTTGCTGACTTTGTTCATGGCTCTGATGGAATGGGGAATATATTTCTACCTCCTCCAAAAACAGAGAAATCTGATAAGAGTGCCTCTGAATTTTTAGTTGAAAAGGTCTCTCAGTACCCTGGTGAAGTATCCATACTTGCACTTGGACCACTGACAAATGTGGCATTGGCAATCAAAAGAGACTCTTCCTTTCCTAGCAAGGTTAAAAAAATAGTAGTACTTGGTGGCTCATTCTTTGCATTAGGAAATGTTAATCCTGCAGCTGAAGCAAATATTTATGGTGATCCTGAAGCAGCTGATGTTGTGTTTACTTCGGGAGCAAATATCGTTGTTGTCGGGATAAACATTACTACACAAGTCCAAATGACAGATGATGACCTCCTCAAATTTGAAGCATCAAATGGGAAGCATGCTCAGCTGCTAAGTGACATGTGCAAATTCTACAGATATTGGCACGTGAAGTCCGATGGGGGATACGGGATATTCCTCCATGATCCTGTCAGTTTCGTGGGACTATTTCGGCCAAATCTCTTCACTTACAAGAAAGGGGTTTGTGAGGGGTTAAACCCAGGGGATAAGCGTGGGGGATACATTGTTGGATCAAGGATAAAAAAATGAAATGGAAGCAACCCATGGACAACCATTTCCCCAGTTCCCTTTGGCGTGAACGGGGGAAGTGGGAAGGAAATTCCTTTAATTATTTTTAAAAA



gi|84169748|gb|DR458396.1|DR458396 CM065C11 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
| |||||||||||| |||
AAAAAGGATGAGGAACGTA

EST sequence (targeted fragment marked with yellow):
CTTTTTTAAAAAGAAAAGCTCCCCTATCCTTCTGCTAGGGTTTCTGCTTTGGGGAGCTGCATAGGAGGGTCATCGGCGCCTCAACGCCTCGACCTCCGGCCCCGAACCACGAGGTATATTAGGTGCGTAGTGGGTGTGGACTCTAACGTGGAGGTGAAATGGCACACGACTCGTTTATTCTGATTTCTGTTTATGGGTCCCGGGCTGAATTGGGCCATAACAGTGAATAATATATTAATCGTAAAGAAAATAGAATTTTCATGGTTTGAGAACAACCAAGGCAAATGCAAGGAGTAGGAAAAATCTGAAGGAATTTAGGCTTGAGTGGTTCTTGGAAGGTTGAAATCAATACCCATGACTTACACTACCTCCGATTTGATGTAGAGAAAAGAAGTCGCCATTACACTCCAAGCTTGATACCAGGGAAAAGGTGGATCGTTTGGTCTCTACATTTTGAAGTATTCCTACTTTGG



gi|164314559|gb|EX167876.1|EX167876 E03_R12_019 Cotton 1-14 day post anthesis Lambda Zap Express Library Gossypium hirsutum cDNA

TCTTTCCTACTCCTCCCAT
|||||||||||| || ||.
AGAAAGGATGAG-AGCGTG

EST sequence (targeted fragment marked with yellow):
CCTTTGGTGGGGGTTAATTACTTGCGGTCGCACTAGTGGNTCCAAGNATTCGGCACGAGGCCTCCCCNNTTTTGCNGNCCAGTTAACCCCCAGAAATGCTCCTTTCTTCATCTATGCGCCACCATGAACGGCGATCCGCGCATTCGAACTCCAAAGGAGTGATTTTCAGCCTTGAGACCCCATTCGGACTTCGATTTCAACGAAGTGAAGGGGAAATGACAGCTAACTTACAAGGTACGGGCGCTGTGCTGACGTACGGGGGCTGTGCTGGCGCAGGCGTGGCTGTTGGAGGATACGGAGGCCAGGGCTGAGGCTTGGCTGCGGTGCGAGAGTAGGAAAGAGACCCTAGGGTTTCTTGGTCTAAAATTTCTGGGCCATTTAGGCCGAGTTAATTTTGGGGCCTTGGGTTAATTTGGGGGATTGGGNTTGGGNCCAAGTCTGTAAAAGGANATTTACTGGACTGTTATAATTTTATTTTGGGGGTTATGGGTTTTGGGTTATTTAAAAAAAAAAAAAAAAACTCGGGGNTCCTTTTAGAGNGGGCCGGGGCCCTTCGNTTTTCCNCCCGGGGGGGGNCNGGGAAGNGNCCAATTCNCCNTGNGGTTTTTTT



gi|109830276|gb|DW228835.1|DW228835 GH_ONEFM_01-01-10R_F12_InvR_17Feb04_086_F Fiber - 1 day after anthesis Gossypium hirsutum cD

TCTTTCCTACTCCTCCCAT
|||.|||.||| | |||||
AGAGAGGGTGACGCGGGTA

EST sequence (targeted fragment marked with yellow):
AGCGATTGGTGGTGGAAGCAAGATATGGGCGCAGTGGGAGAGAGTGGGAAAGTGAAGGGTTATGTGATGGAATGGATAGGAAGTGAGATTAAGAAAGAGAGACCCAGTAATGATTGGATTACTTCAGTGGCTTCTTCAAGCTATGAAATGAAAGCTAAATCGGGGGAGAAGAAGAATAAGAAGAGCAAAAAACGATTGGAATGGTGGGTGTCAATAGAGGACGATAAGGAAAACAATGTAAAGAGGAGACCGACAAGGGAGTGGTGGAAAGAGGAGTATTGCGCAGAGCTTTCAAAAACAAACAAAAAGAAGAAGAGAGAGATGGCAATGTGCCATAGTGATGATAATGGTGGTTGGGAGAATTGGTGGCCGCTTGATGATGCGAGGAAGAAGAAGAGGAGTAAAAGCAGTATTGGAAGTGTGGACTGGTATGATTCATTTAGTGGGGAGATTCCCAAGAGTGGTGGGATTAGCAGTACCCCCAGTATGAGAGGAACCGTTTCCTACATTGCTCCTGAGTATGGTGGAGGAAGTGATCCATCAGAGAAGTGTGATGTTTACAGCTTTGGAGTTCTACTATTGGTTCTCATTGCAGGGAGGCGACCCTTGCAGGTTACAGGCTCTCCTATGGCGGAGTTTCAGCGGGCCAATCTCACTTCCTGGGCGAAGCATCTTGCACAAACTGGGAAGCTCTTTGATTTGATTGACCAGAGTATACAGTCTTTGAAACAAGAACAGGCTCTTTTGTGTATCA



gi|164256808|gb|ES838696.1|ES838696 UFL_046_11 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
||||||| ||||.||| |
CGAAAGGAGGAGGGGGGGA

EST sequence (targeted fragment marked with yellow):
GTTGTGGGTGGGGGGGGTGGCGTGCGCGTGGGGGGTTAGTTATCTTAGTGTGGGTGTTCCTAAAGTATTTTTTGTGCGTCGGAGGGGATTTATCTTTGTGTTGGTCCCCTCATAGATAGAGGGGCGCGCCGCCACCAAAACGCGCGCGANCAGAGAGGACGACGGGAGGAAACGTCCCTTCTTAGAGGGAGAGGNCGCNGGTGTTGGNGACNNAAGNGGANAGTGGGNAGGAGGGGAGGAGAAGAGGGGGGAGGAGAAGGAGAAAGGAGGNGGGGAANGTTTTTTTCTTCCAAGAGAGGGGGGNNGCGGGGGGGGGNGNNNGGNNGGGGGGGNGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGAGAAGAGNAAGGGGAGAGAGGGGANAGGGAAGGNAGGAGGGGGGGGGNAGAGNAGGAGGGAGGGGGNAGGGGAAGAAGAGAAGGGGGGGAAGGGGAAAGGGAGGGAGGGGAGGGGGGGGGAGAGAGGGAGGAGGGAGAGGGAGGAGGAGGAAGANGAGGAGGGGNAGAGGGGGGGGGAGAGAGGAAGGGGAGAAGAGAGGGAGAGGAGGGGGGGGGAAGGAGGAGAGAGGGAGAAGGANAGAGGGGAGGGGAGTTGTTTTAGNGAGGGGAGAGGAGGGAGGGGGGGAGGAGGAAAGCGGAAGGGTTTTTTTTGGGGGGGGTAATTTTTCTTCTTTTTTTTGTGGAGTGTGTGGGTGTGTTTTTTTGGTTGGTTTTTGGGGTTTGTTGGTTGATGTGGGGTGGGGTGTTTGTGTGTTGGGGTTGTTGTGGTGTGTAGTTGTGTTTGGGGGTTGNGTTGGGTTTGAGTATGNGTTGGTTGATTGTGTTGTGTGTTTTTTGTTTTTTTTGTGTTGTGTTTGTTGTTGTGTTGTGTGTTTTTGTTGTTGTTTTTGGTTATGTGTTTTTGTTTGTGTTTGTGGTTGTGTGTGTTGTTTGGTTGGNTTTGTGTGTTGTGTTTTGGTGTTGGGTTGGGTTGTGTGTTGNGTTGGGTTGTTGTTTTGTTGTGTTTTGATGTTGTTGTTGGTGTGTGTGTGTGGGTTGGTTGTGGGAGTGGTTAGTGTGTGTGTTGGGTTTGGGGGAGGGTTGTGGTTGTGGTGTGTGGTAGTAGTGTTGTGGGGTGTGTGTGTTGTGTGANGGTGGGATAGTGGGTGAGTGGGAGTGGGGGATTGTGGGATGGGATGGTGGTTTGGGTGTTTATGTGGTTGTGGGGTTATTTGATTTGTGTTGGTGGGGGTGTTGTGGTGTGTGTGTTNTTTGTGGAGTTGTTGGTGGTAGTGTGGTTGGTTTGTAGGTTTGTGGTGGTGTGTGT



gi|164294263|gb|ES847420.1|ES847420 UFL_144_01 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||.|||.||||||||| .
AGAGAGGGTGAGGAGGGGG

EST sequence (targeted fragment marked with yellow):
AAAAAGAAATTAAGCTCTTAACCATGGCTGCCATCAATCCAGCAGTAGCAGCACCATTTTCCAGGGGTGTTCATAGAAATACAGCGGCCCAAAGCCACAAAGCTACGACAGCTGCCAATCCAGCAGTGAAATACGGACGTGCAGCTTCGATTCTTTTTACACCCACACAGACACAGTCCCCATTACTACGTAGAAATTCGGTTCCCAGCAGAAGCTCAGACACGAGAATCATGGCTGCCAATCCTGAAGTTTTGTCGTCACCGTCGTCGTCAAATTTAATGGGGGTTCAGTTTTTTACGCAGTGCCAGTTTCGGAACCTTTACGGTCAGGATTTAAAGCTGGAAGACCAAATTTATTGGCATGGATATGGAGATCCACCGGAAACTATAGCTCAAAATCAGTCGGGGGAGGGGGGGGAGGCACTCGGGAGACTCAATAGGTTCACGCGGAGCTGTTGTCGAATCTTGGCGGAAATAAGGTGAGGTGGATTAGGGCCTGGAGGGAGAGGAGGAAGATGAGGCCAAAGGGAAAGAAGGAGGGTAAGTGAGAAGAAGGAGGGGACTGGAGGGGGTAGAAGAGGAGGGAGCCGGGGAGAAGAGGGGTGTAGGAGGAAGAGTTGGGGGATGGGGAGGGCGCATGGAGTAGGAGGAGGGCAGGGCTGAGGTAAAAAGGAGGGCTAGAAGGGAGGGGGGATGGGGCGGAGAGGAGGGGAGGGGGAGGGGGGGGCGGGGGGTGAGAGGAGGGGATGGGGGGGAGGGGGGGGCGGGACTGCGAGGCGGGGAGGAGGGGGGAGTGTGGGGATAGGAGGGGGGAGGAGTGGGAGAGAAGGGGAGAGGGGGAGGGCGGGAGGGAGAGTAGGGGGGCGGGGGGAGGGGGGGGGAAGGAGTGAAGGAAGGGGAGGAGGGGAGGGAGGAGGAGGGGGTGAGCAAGGAGGGGGGGGAGGAGGAGAGGGGGGGCATAGAGGGGGGGGTGAGCGAGGGTGAGGGAGGGGTGGAGGGAGTGGGGGGAGTGGGGGGGGGGCGATGAGTGGGGTGCTGAAGGGGGGAGGGGGGGGGTGGGGGGGAGGAAGGGGGGGTGGGGGGGAGAGATGGAGAGATAGGGGAGTGGGGGTGGGGGGCGCGGTGG



gi|109851484|gb|DW480463.1|DW480463 GH_RMIRS_025_E05_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TCTTTCCTACTCCTCCCAT
.||||||| |||| ||||
GGAAAGGAAGAGGTGGGTT

EST sequence (targeted fragment marked with yellow):
GGCAGAGGACGAGACAATTTGGGTGGAGAAGGAAAGGGAGGCAGGGAGAGAGAGCGGAGAAGAGGGAGAATAGTGAGAGGCAGGATGGAGGTGGAGATGGAGGGAGTGACCAAGGAAGGAGCGGGACCAAGTAAGGGAAAAAAGGCCTAGATTTGTGTGGTAGAGACTCGTAGCAAGATTCGTTGCCTCGAAATTTCCACTTAAGTCGCTTTATTTGTAATACCGTATTGTTATCAACGCTAAAACATAGCTTTCCATCCTCGTTGGCCGTAAATTCAATGGAAATTTCCCTGTTTCTGCCTCCAAACCTGGCTTTTGTGTTGTACACTTTATTGCCAAGTACGTGTTCTCTTCTCAAAACGAGAGATTGGCTTTTCCCAGGCCTTTGAGCTCTAGCTCTGGCATAAGCTTCCTTGGCAGAATCACCAACGAGAAGCGTCATTTCTCCATCAACAACAATAGCAATATAGAATCCAGAGTCGGGCTCAGACCCGGATCTGAACTTAGCTCTGGAGAAGTCCCAGAAGACTTGAACATTAGGGACTGTGGCGCTGCTGAGTTTCCTATGTCCATGTTTCTTCCAAAAAATAAAAGGTTTGATATGCAGATGAAAATGGAGGGTGGAGAATGAAAGGGAGGCAGGGAGAGAGAGCGGATAAGAGGGAGAATAGTGAGAGGCATG



gi|164304883|gb|ES852363.1|ES852363 UFL_678_29 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
||||.||.|||| . ||||
AGAAGGGGTGAGAGTGGTA

EST sequence (targeted fragment marked with yellow):
CAAAGAGTTCGGCGCGAGCTTGGAGAGGCGGTTAGAAAAAGGGATTAGCAGAATCCGGTCCAAAAAGAATGGGCTGGTGGTTGGTGGAATAGAGTATATGGAGAAAAAGGGAATTGGCTTGGATAACAATAACCAACTTCTTCGAGGCAAGATAGCTGAAAACGAGAGGGAGCAGCAGAGCATGGATTTGGTGGCCGGAGGGTCAAGGAATAACTTCGAGGGCATACATTCTCAGCCATATGACTCTCGGAACTACTTCCAAGGTGATGGCTTACAACCCGGCGGCAATTATTACAACCCTCAGCAGCAGCAAGACCAGATAGTTCTTCAACTAGTTTAAGGGTCTTTGGAGAAGAAATGGCTATGGATTGGCCAATATATTTTCATCTTAGATGAAGCTATATAACATGGTGGTTCCTATGGGTTGGGGAGCTAATGGTGGGGGGGGGGGGATGGGTCATTGGTGGTGGTTCAGTTTTAGAGAAGAACATCTTAGTATTACGTCAGATGAAAGCTACTATATAAGGGAGGGATATTTATATTAACTTTCCTTAAATGGAGGACCCTAGAACTCATCTTCTGGCATGTTTAAGATGGTGAGAGTGGGGAAGACTGGTAAGTTTGATTTTCAGACAAGAATGGCCCCTTCCATATGCTTAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCTCGGGAGGGACTTCTAGGAGGGGGCGGGGGGCCCCTCCAATTTTTCCACCCGGGGGGGGGGGGACCAGGGGAAAGGGGGACCCCAATTTCCGCCCTTAAAAGGGGGGG



gi|109866007|gb|DW494983.1|DW494983 GH_RMIRS_105_C03_R Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq

TCTTTCCTACTCCTCCCAT
|||.|||||||| |||| |
AGAGAGGATGAG-AGGGAA

EST sequence (targeted fragment marked with yellow):
TTTAAAGTAAGGTAACAAATGAGTAGTTCATGCAGGAAGTCCCAGTCTTTGTTCACATCGGTTAAGTTCCTCGCTTCGATCATTTCTTGCATTGAAAACCTGAAATCTCTGTATGGGTCCGGCGAGTATTTCTTGACAGCAACGCCACCGTCCATCGGCGGTGGTTGAGGCGGTGTTTCGGTCGTCGTCTCGGTGTTAGGTTCAGCTTCGGGCCTTGTATCGGGTGACTCGATGATGGAGTTAGAACGACCTGGAGAAGAGAAGAAGAAACGGTGGGAAGCGTATACGGTGGCGAAATCAGGTGTGGCGTCGGCGTCGGAGTCGGAATCGGTGGTGCGAACGGAAGGTGTTAAAAGGGAAGTGGAAGCTGATGATGTTGGAAGGTCGTAAAGGGAGTTAAAGTTCTTGGGAAACGATGAAGGATCTTGTTTTATTGATGATGATGGGAGTAAGATTGAAGATTCGTCCATTGATTTGAGATTTGTGAAGCAGAGATGAAACATTTTCAAGAACATATTCGACATTTTTCTTTTTGTTGTTGTAAGAAAAAGGGAGAGTAGGAGAGATTTTGAAGATT



gi|109888699|gb|DW517668.1|DW517668 GH_TMIRS_213_F12_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TCTTTCCTACTCCTCCCAT
|||||||||||| ||| |
TGAAAGGATGAGGCGGGAA

EST sequence (targeted fragment marked with yellow):
ACCCACCAAAAAACCTCCCCAAAGTCTTCCTCCTTTCCTTTCTCATCCTTCTCAAGTTGCGTCCCCGAAGATAGGCCGTTTGCGGTAATGGGTACTCCTCTCCCTCGTGAATGGGTCGGCCTTCAACAATTCCCCGCTGCTACTCAGACGAAATTGTTTGAGTTGTTGGGAAAATTGAAGCAAAAGAATGTTAATACTTTGACTATCCTAGTTATGGGCAAGGGCGGAGTAGGAAAGTCTTCTACTATCAATTCTCTTATTGGGGAGCAAGTTGTTCGAGTCACTGCTTTCCAGTCAGAGGGGCTGAGACCCGTAATGGCTTCACGCTCCTGGGCAGGGTTTACATTGAATGTAATTGATACACCAGGATTTGTAGAGGCTGGCTATGTCAATCACCAAGCTCTTCAGTTGATCAAAGGGTTTCTTTTGAGTAAGACCATAGATGTTTTGCTTTATGTTGATTGCCTGGACGCCTATAGAGTGGATGACTTGGATAAGCAGATCATCAGGGCTATCACAAACAGTTTTGGAAAAGAAATATGGCGCAAAAGTTTGCTTGTTCTCACTCATGCTCAACTTTGTCCACCAGATGGACTGAGTTATGATGTTTTTTCTTCTAAAAGATCAGAGGGTGTCCTAAAGGCGATCCGTATTGGAGCTCGTATTAGGAAAAAGGATTTTGATGATTCTGTCATTCCTGTTGTTTTGGTTGAAAATAGTGGGAGGTGCAATAAAAATGACTGTGACGAAAAGATTCTTCTGAATGGTGATGCTTGGATCCCCAACTTAGTAAAAGCCATCACAAGTGTTGCAACAAATAAGAGTCAAGCTATTGTAGTTAGCAAGAAGCTGGTAGATGGGTCTGACGCTAGTGATAAAGGAAATTGTGGATTCAGTTATTCTTGGGCTTC



gi|164311254|gb|ES834467.1|ES834467 UFL_429_53 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| |||| | |||
AGAAAGGACGAGGCGAGTA

EST sequence (targeted fragment marked with yellow):
CAGTCATCTCCAAAAAAGTTGTGGGAGAAAAAAATATTACGTTTGGGAAGCGAGAAAGTGCGAGAAAATGAGCGGAGCAGGAAAGAAAGTAGTAGATGTGGCTTTCAAAGCAGGAAAGAGCATTGATTGGGAAGGGATGGCGAAGCTTTTGGTCTCCGATGAGGCTCGCAAAGAGTTCGCCACTCTTCGTCGCACTTTCGATGAAGTTAACTCCACTTTACAGACCAAGTTCAGCCAGGAACCTGAGCCTATCGATTGGGAATATTATAGAAAAGGAATCGGCTCGCGATTGGTGGATATGTACAAAGAGGCTTATGAGAGCGTAGAGATCCCCAAGTTTGTTGACACAGTCACTCCTCAATTCAAACCGAAATTTGATGCATTGTTGGTTGAATTGAAAGAAGCAGAAGAGAATTCTTTGAAAGAGTCCGAGCGTTTGGAGAAAGAAATTGCCGACGTTCAGGAACTGAAGCAAAAGATCAGCACCATGACAGCAGATGAGTACTTTGAGAAACATCCCGAACTGAAAAAGAAATTTGATGATGAGATCCGCAATGGACATTGGGGCTATTGAGACATGTTTGGTAATATAAAGGTCAGGCTATAAAACAGTCCCAACCCAGTATTTCTGAGGTGGGCTTATCATTTTCTTTGGTGTTTTACCCCCAAATGATGATTACCGAAACTCTGGGTTTTTGGGGGTATTTTCATTCGGGAACTTAAAAATATGAATAATTTCACTTTGGAAACCCAAAAGGGGGAAACCGGGTAAAAAAATGGGGTTTTTTCCATTTTAAGGGGGGGCTTCCCATGGGTTCCTGGAAGGGAAAACATTTTCCTTTTTTTAAAAA



gi|109881637|gb|DW510607.1|DW510607 GH_TMIRS_145_B10_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TCTTTCCTACTCCTCCCAT
||||||||||| | |||.
AGAAAGGATGATTAAGGTG

EST sequence (targeted fragment marked with yellow):
CTCATTTGTGCAAAGATAATACAATGCAAAATACACAGAGATAGAACATGCAAATGTCAAAAATAAACCTGGTATATGGTGGAATTAGTAGGAAAGACACAAGCAACAAAAATGTTAAACTACCCTGAAAGAAGGATAATCAAGCGTTCTATGTTTCTGGGCATTAGATATCACCCCATATAGAAAAGAGGAATGACAGAAGGCAGGAAGCCTTTAAAATTAACCCCATCAGATGGAGAGGAAAAAAGAGCCTTGTAACCTTTGCCTCCAAACTCAAACAAGTCAGCCAAGTAATACATCCGGGAGACTCCAAATCCACAGAAAACATGAACATGGCTAACAATGTGGATGCTATGTTATGCAATTGTAGCTGTATACTGAGACGACTGAAGTTGGATAGCCCGATAAAAGCATTTCTTCCCTCTTACCCTGTCTCTCTCCATTGATATCTGAAAAGTTCACTCTTTTAAGATATCAGCAAACACCTCATTCTTTGCCATCTCTCTGCATGGATCAGTCAAACTTGGTCAGTAAGCTGCAGCTGCTGCTGCATTTTCTTCTCTAAAGCATTCTCAAAGTTCCGACTGGACAATGATAAAATCTGATTCAGCAGTAATCTTACACCAGCCTTCTTTACAAGTGCAATTCTTGGTTTAATTCTCTCCTCCAAACTGTAGCCAAAATATTGAGGGAATTTAACAAGCTCTGACTTTGAATAGTCCATGGTTAAAAAGAAATCCCATTTTG



gi|24977490|gb|AJ514007.1|AJ514007 AJ514007 Gossypium hirsutum ovule first day the flower opens Gossypium hirsutum cDNA clone su

TCTTTCCTACTCCTCCCAT
|||||||||||||.| | .
AGAAAGGATGAGGGGAGAG

EST sequence (targeted fragment marked with yellow):
TCGAGTCTAGACTCGAGTTTACTGTGGTGGCTGACTGTATGTCAATTAATATAATTTTTTTCCTAAAATGTTTTATTATAATTATTTTTATATATATATATATTTATTATAATAAAAGTTATAAAATAAATATAATTTTAATATAATAAATATTTACTAATCATTAATATCAATATTTAATACCAGACAATCACGAAAGAAACTATAATAATAATATATGAAGGCAATAAACGTGCTTAAGATTATGACTTGATAGCCGAAGAGACAAGCAGATGAGGAAAATGAGAGCCAGAGTATTTAGCGCGCAAGATCGAGCGTCGTGGATTACGAAGAGCGGGAAGCAGCTGCAGGAGGACAAAGGCGTTAGTTGTAGAATGGTGGAGAGGAAGTCCAAAAGAAGAATGATGAAGAGAGATGGAGAGACGCGTGAGGACAAGACATGTACAGTGTGAGTACGTGGGAGGACGGTAGAAGGGAGAGCAAGATGAGGTGAGAAAGCGACGAGAGAGCGAAATCGAGTGTGAGTATCTTATATCTCTGAACTTAGACTCTATTTTTTTCATTTCATCAACTTATTTAACTAACTAATAACCTACGTCTCTATATCTCGTATTTAATAGATATCTCCGCCTTGGACTTGCTCGAGTCCTACCGATATATTTCTATACGAAGACCCACATACATCTTGCTTCAGATCCCCATCTGTTTTTACATCATAGCAGACAGATATAATATCTCCTCATCTTATTAAATACTACATATGCATAGCAGTCCTAGGTATGACTCAAATGAAGATGAGGAGTAGGGTAGTGACGAGAGAAGCGAGGAGAGAGATGAGGGACGTAGGTGACCGGGTAGATAGTAGCGGTACGGTGGTATTGACAGATGAGGTGTTGGAGCGATGAGAGGGGAGTAGGAAAGAGTGAAGTAGAGTGAGAAAGAGTGTAGGAGACTGGAAGGTAGTAGAGGCGAGGGAGCGGAGAAGATAGAATGTAGGTAAGTAGCTTTATCGTAGTGAGCAGTCTGTAGCAGGTGTTTAGTGTTGTCGTATATAAGAAGTGGATGAGGCTGAGAGCATGTGGAGGGGAGGAGAGGGGGGGGGTGG



gi|164242655|gb|ES795920.1|ES795920 UFL_472_51 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
||||| |||||| ||||.
AGAAACGATGAGTCGGGTG

EST sequence (targeted fragment marked with yellow):
AATTCGGCACGAGCAGAAAATGCGTTAACTTTTATGGATTTGGGTATTGTGCCCCATAAGTTGAAGGGTTACCCAGTCGAGTATCTTATTCAATACCGTAAGGGCGGTCCACAATTTGGTTCTACAGTCAGTGAAAAAGTTAACCCAGATTCTTATCCTTAATTTTATTTGGATCTCATTTCCCGATGTGTTTTCCTTTTTACCTTTTTCTTGGTCCTAAAAACGCCTCCGATGTTGAAAAGCCTATTCTGGTATGTGATGCTATCAATTTCTTAAAGACAAGAATGACCAAAAGAGTGCATAGTTGTAGTTTCCCTTTTCCAAAAAAGGAAGAAGTGTGAGTGGGCTGAGTAGCAAAGATTAATAAAAGTTGAGATAATACTTGGTTAATCACTATGTAAAACATCTGCAACTCTTGGGACTTAACTAGTTAGTGGCATCATAGGTTATTCTTTTTACAGGAAGGGGGGCTTTTTTGCGTTGGCTGAAACTAGGAATGAAT



gi|164250295|gb|ES809752.1|ES809752 UFL_254_88 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
||.||||.||| |||| ||
AGGAAGGGTGAAGAGGCTA

EST sequence (targeted fragment marked with yellow):
GGCACGAGCGAGTTTTTTTTTTTTTTTTTTGAAGATTAACAAACTTATTCAGTTGTGGGGCGTGCCATTAAGGACCTTTGCAAACATTCCTGGATGGTTCATGTTAGGCATATGTTTGGCAAAAATGGCATTCTTAAGACCTTTGAGGAGACATATTTGTAAGAGCCCATTTTTACCCGGGCCCTAAATAGAAACCCAAAATCCAAAATAAGACAGTCTATTACAGTAGTAGCCCAAAGCCAAAATTAAATACACCCAACGGGCCCAAAATAAAAAACCTGGCCCAAATGACTTTAACAATTTCGACAGAATGGAGCAAACCCTAAGCCCCAGCGCCGCATGCCAGGCTCCAACAATGCGCGCCGTTCCACCTCCTCGCACGCCGCCACCGCCCAAGGCTCGCCAACCACCGGTCGTCCACGCGTCTGACGCCTGAAACCGCCGCGTGGCTCCGTCGACGGAGATCCTTTCGTCGTCGTCGGGGTTGGGCTAAAGGGGGTTAGACTTCTCCTTTTTCTCTTTAGGCTCCCCCTCACTGGTGTCATTCACCACACTTAAAAGCGGGATTAAAAGCCCGTCTTTCGTCTCTGCCCGTCAACTATTACGGCGGCACGATCGGAGAAGTGGGAAGGAGGGACGGCGGCGGGGTTCCAATGCTAAGCCTGGAACCCTAGCAGAGAACCGGTCATTTTATACACCGGCATAGATGCTAACTACAACCAGGTTCAAAACCTGGCAACCCCAAAAAACGAATCCGACCCATTGCTAATAGAATGGGTCATATACTTCGGAAACCCTCTAATGACTCCACCGGATGGTGTACAAGGAGATAACTTTAGAGATCCAACAACTGCTTGGCAGGGCCCTGATGGAACCTGGAAATAGTCATTGGGAGCTACAGCAACAACCAGGGCATGGCTATACTCTTCCAAAGTCAAGATTTTGTTCATTGGAC



gi|109874114|gb|DW503089.1|DW503089 GH_TMIRS_071_C03_R Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TCTTTCCTACTCCTCCCAT
|||.|||.||| |||| ||
AGAGAGGGTGAAGAGGATA

EST sequence (targeted fragment marked with yellow):
AAGAACACCCATTAATCTATTAAAAAAATTCAGAAATTTAACATCATAAACAAAACCCATGAAAAAATTAACATAACAAATAAAACCCATCAATTTATAAGAACACAAAACCAAACAAAAAGAAAATGATGAGAAGAAAATCAAAACCAAGGCTCATTTTGGGCTTTTGGGTTCTTGAGATTCAAGCCACGGTCAATAAATCCAAATGGTCAAGACGTTGGATGCTGTGAAGAGGAGCCACGGTCAAGTTCCAAGATGATTCAACGATGGTGACTCGATTTGACGTCGGAGAGCAATGACAGTGAAGCGACGACCAAGGGCTTTGAAAACAAAAAATAAAGTAGAAAAGAATAGGAGAAGTGGGAGAGAGAAAGAAAGGTGGATCATTTGTTGCTTCTTCAATCAGTAATGGCATTAGAGTGGAAGTAAGTTAACTGGCGAAAGAGAATCCCAACGGATTTTATAGAGTTCTCGGTGAAAACAAATCAAAGGAAATGGAAGAGCTGGAGGACAAAGTTTAGCGGAGAACAAACGTAGGTGACAATACTGAAGTGTGATT



gi|78349821|gb|DT570095.1|DT570095 EST1080735 GH_TMO Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|| |||||||| ||||||.
AGTAAGGATGACGAGGGTG

EST sequence (targeted fragment marked with yellow):
TTCAATTCCAATTCCCACTCTCTCTCCCCATCTTGAATCCAAACAAATTAAAAGTAAAACACCTCTTTCATTCTCATATCTTTAATTGTTTGACCAGATGGCTCTTCTAATTAACGAAGTCGACTCCCTTACTAACCAGATCTTCTCCATCCTTGAAAACAAATTTCTTTTCGGTGATCACGAGAATAATGCTGCTGCAAAAACCCATGAAGAAGATCACTTGAAATCTGGAAATCAGATTTCCGGGAAAGTAAGAATCCTATCCATTGACAGTGGGAGCTTTTCCGATGGTATATTGGCCGCCCAATCCCTCCTTACCCTCCAGACTTTTCTCCGTCAAAAGTCGGGGAATCCCAATGCTGTCATTGCCCAGTATTTCGACGTTGTTGCAGGCTCTGGTGCTGGTGCGATTCTCGCCGCATTGTTGTTTACTCGCGCTGAAAACGGCGCTCCCATTTTTACTGCAGACCAAGCTCTTCAGTTCCTTCTGAAAAACCGTCGGAAACTCTTTCCCTCCTCGCCTCAGGGAATATTCCGTCGACTTTTCCGTCCATCGAAGGTGAAGAAACTGTTGAGCAAAACTTTCGGGGAGCAGACTTTGAAAGATACCTTGAAGCCGATTTTGATACCCTGCTACGATCTCTGTTCCAACGCGCCATTCTTGTTTTCCCGCGCTGATGCATTGGAAATGGACGGCTATGATTTCAAGATGAAAGACGTGTGTTACGCAACGTCGGCTGATCCGACGGTTGTGGGAGCAGTAGGAATGAAGTCAGTGGATGAGAGGACGAAATCCT



gi|109842816|gb|DW241374.1|DW241374 GH_TS_1-03-07_F07_LibSeq2_01Dec03_027 Stem - 3-5 weeks after planting Gossypium hirsutum cDN

TCTTTCCTACTCCTCCCAT
|| |||||||| ||||||.
AGTAAGGATGACGAGGGTG

EST sequence (targeted fragment marked with yellow):
CTCTGGTGCTGGTGCGATTCTCGCCGCATTGTTGTTTACTCGCGCTGAAAACGGCGCTCCCATTTTTACTGCAGACCAAGCTCTTCAGTTCCTTCTGAAAAACCGTCGGAAACTCTTTCCCTCCTCGCCTCAGGGAATATTCCGTCGACTTTTCCGTCCATCGAAGGTGAAGAAACTGTTGAGCAAAACTTTCGGGGAGCAGACTTTGAAAGATACCTTGAAGCCGATTTTGATACCCTGCTACGATCTCTGTTCCAACGCGCCATTCTTGTTTTCCCGCGCTGATGCATTGGAAATGGACGGCTATGATTTCAAGATGAAAGACGTGTGTTACGCAACGTCGGCTGATCCGACGGTTGTGGGAGCAGTAGGAATGAAGTCAGTGGATGAGAGGACGAAAATCCTGGCGGTAGAAGGTGGGGTGGCCATGAACAATCCAGCTGCGGCGGCGATAACACACGTGCTGAATAATAAGCAGGAGTTCCCGTTTTGTAATGGGGTGGAGGATCTTTTGGTCCTATCTTTGGGGAATGGAGAGTCCGGTTTCGGTTCCGGCTCCGGCGACCGTACTCTTACTCCCGCGCCGACAAGGTTTCTTAGAATAGCCGGCGAGGGAGCTTCCGATATGGTTGATCAAGCAGTTTCAATGGCATTCGGAGGAAGCGGAAATGGAAGCAAGTACGTGAGAATTCAGGGGACCCCTAACGTTAAGCCAAATAGTAAAAGCGAGGCAGTGATGAGCATTACAAAGGAGATGCTAGGTCAAAGAAACGTGGAGTCGCATCTTTTCAAAGGGAAAAAGAGGAGTGAGGTGACGAATTTGGAGAAACTTGAGATGATGGGAGGTGAGTAAATCAAAGAGCA



gi|84174893|gb|DR463541.1|DR463541 CM119E08 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| |||| | |||
AGAAAGGACGAGGCGAGTA

EST sequence (targeted fragment marked with yellow):
TCTCCAAAAAAGTTGTGGAGAAAAAAATATTACGTTTGGGGAAGCGAGAAAGTGCGAGAAAATGAGCGGAGCAGGAAAGAAAGTAGTAGATGTGGCTTTCAAAGCAGGAAAGAGCATTGATTNGGGGGNAAAAAAACACCACCAACCACCCACCCNNCGGTGTGGTCGCAGCGTGCGGCGTACCCCGGCGGCGCACCCACAACACAACACCTCCCGGCTCTTTTTTTTTTTTTGTTGGCTGCACANCCCTGTCGGGCTCTCGCCTAACCCCCCCCCCCGCAACTCCCGGCCCCTTCCCCCGCTCCAAACAAAAAAAAANAGAAAAAAAAAAGTGCGCGGGGGGGGGCGAATGAACCAGCACCCAGCACTATAACAAATGTATTTTATTTTTTATTNATGATTATTTTATATAGCAGCATTTTTTTTAAGAGAGATATATTGTGGGGCGGGCGGGCCCGAAGATGGGGGGCTGGGCGTAACTCACACATGTTTTTTTTTTTTTTCCCCCCCCCCCCCATAGANTATTTTTTTTCTCCCCCCGAGCGCCCCCCCCCAGGGTGGGGACGCAGCAGACAACAAACAAACAAACACACATGATCACTCTCTTTTGTTGTGTTTGTCCGCGTGTGTCGCGTACA



gi|164295319|gb|ES847445.1|ES847445 UFL_144_27 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
.|.|.|||||||||||| .
GGGAGGGATGAGGAGGGGG

EST sequence (targeted fragment marked with yellow):
TTCGGCACGAGGTCTCGAGTTTTTCCTTTTTTTTTTTTTTTTTTTGATTTAAGCTTTGTAAATTGATCTAAAAAAAAATTGGTCTAAACAAGAAAGAACTCAAACCTGAAAACATTATAATCTAAAACTGACTCGGACTTTTCTCAAAACGGGATATGTCTATATTTGAGTGACAAACGAGGTGATAGAGTGAAGAATCTTGGATCATTCCCAGAATTTAATTTTTCTGTTTCTTCTTAGCCTGGTTCTTCTCCAATTTTCTTTTTGGTTCGGATTTTGGAAAAAACTCCCTCCATTCATCTGTTAGAACAAAAACGGGCTCATCTTCCTCATCATCCTCTTCTTCTACCTGTTGTAGTTGTTCATACTCTTGGTTTTGGAACGCCGGATTGGCAGAATGGTGGGTTTCGTTTGGGGGGGGGTGGGGAAACAAAAGGACCTAAAGTAGGGATTACGTGAGAATGGTGAGTAATGAGGTGGTGATGGTGGGTGTAGAGATGGTTAGTGAGAAGAGAGGGGGTGAGGTGGGGAGGGTGGAGGTGGGGGGGATGGGTGGGGGGGGGGAGTTAGTGAGAGTGGGAGGTGAAGGAAGTGTGAGTGGGGGTATGTGTGGGGAGGGGAGATGGGGGGGAGAGTTAGGGGGAGGAGTAGGGAGGGTAGAGGGGGTGAGGAATAGGGAAGATGGGATGGGAGGGGGGGGGGGGGAGTGGATGGGTGTGTGGGTAAGCGTTGTTATAATGGGGGGTAGGTTTGGGATGGTGGAGGTGTGGTGTGAAGAGGGTGGTGGAGGTGGGAGTGGGATAGGATGGTGACGTGGTGGAGTGTTGTGGGGGTGGGGGGAGTGGGAGGGGGGAGGTGATGGGAGGTGGGAGGTGTGGGTGGTGGG



gi|6461517|gb|AW187081.1|AW187081 BNLGHi9688 Six-day Cotton fiber Gossypium hirsutum cDNA 5', mRNA sequence

TCTTTCCTACTCCTCCCAT
|||||||| |||| | |||
AGAAAGGACGAGGCGAGTA

EST sequence (targeted fragment marked with yellow):
CAAAAAAGTTGTGGAGAAAAAAATATTACGTTTGGGAAGCGAGAAAGTGCGAGAAAATGAGCGGAGCAGGAAAGAAAGTAGTGGATGTGGCTTTCAAAGCAGGAAAGAGCATTGATTGGGAAGGGATGGCGAAGCTTTTGGTCTCCGATGAGGCTCGCAAAGAGTTCGCCACTCTTCGTCGCACTTTCGATGAAGTTAACTCCACTTTGCAGACCAAGTTCAGTCAGGAACCTGAGCCTATCGATTGGGAATATTATAAAAAAGGAATCGGCTCGCGATTGGTGGATATGTACAAAGAGGCTTATGAGAGCGTAAAGATCCCCAAGTTTGTTGACACAGTCACTCCTCAATTCAAACCGAAATTTGATGCATTGTTGGTTGAATTGAAAGAAGCAGAGGAGAAATCTTTGAAAGAGTCCGAGCGTTTGGAGAAAGAAATTGCCGACGTTCAGGAACTGAAGCAAAAGATCAGCACCATGACAGCAGATGAGTACTTTGAGAAACATCCCGAACTGAAAAAGAAATTCGATGATGAGATCCGCAATGACAATTGGGGCTATTGACATGTTTGGTAATATAAGGGTCAGGCTATAAAACAGTCCCAACCAGTATTTCTGA



gi|109878274|gb|DW507245.1|DW507245 GH_TMIRS_112_E01_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TCTTTCCTACTCCTCCCAT
.||||||| |||| |||||
GGAAAGGAAGAGGTGGGTA

EST sequence (targeted fragment marked with yellow):
AACCACACGACAGCAGTCAGATCAGCAAATCTCTGCTCTTTTTTCCTCCAACAAGCAAAAAGAAAAATGAAAATGGGTGGAGAAGGAAAGGTCTATACTTTAGCAGAGTTTTCTCAACACAACAATGCTAAAGACTGTTGGCTTCTCATTGGGGGCAAGGTATACAATGTGACTAAATTCTTGGAGGACCATCCTGGTGGTGATGAAGTCTTGTTGTCTGCAAGTGGGAAGGATGCTACCGATGATTTCGAGGATGTTGGTCATAGCAGCAGTGCTAGAGCAATGTTGGATGGGTTGTACGTGGGTGATATCGATGCATCAACCATTCCCACCAAGACAAAGTACACTCCTCCGAACCAGCCTCACTATGAGCAAGATAAGACCTCGGAATTCGTTGTAAAGCTTCTCCAATTCCTTGTTCCGCTCCTAATCTTGGGATTGGCATTCGGTATCCGCTTCTATACCAAATCACCAGCTTAAGCATCGAGACCATAAGAGAAGCTGGCAAGATTCTTCACAATAAGGTTATGTTGGTGAAAATTTTCAGAACTGTAACATATGTGCTTTCTTTGTCTATCGACTAGTTCCCCATGCCCCCTTTTCAATGTAAGATCGAAGATTGTTTCCTTTTTTCCTTGTAGCTTGGAAAACTTCCTTTTCTTGCGCTCTTGAGCATTTGGTAACCGTAAAACTTGTCTTTTTGGG



gi|164356734|gb|ES848765.1|ES848765 UFL_658_81 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
|| ||||||||||||| .
AGTAAGGATGAGGAGGTCG

EST sequence (targeted fragment marked with yellow):
AGAGATTTTCCAGGTAATGTTAAGCTAGGGAGTGGGAGAACCATACCTGGAGTTTCACTCTACAAAGGGCGAAGGTTACTGCAGGCAAACAAGCAATACCCTCTTGTTTATATGGGTAGTAACTCAAGCAGCCCTAATCCAAGTTCATTATGCTTAGAGGGAACTTTGGATCCACATGTTGTTTCTGGGAAAATTGTGATATGTGATCGAGGAATAAGTCCTAGAGTGCAAAAGGGTCAAGTAGTGAAAGATGCTGGAGGAGTAGGAATGATTTTGACAAACACTGCAGCAAATGGGGAGGAGCTTGTTGCAGATTGTCACCTACTTCCAGCAGTTGCAGTGGGAGAGATGGAAGGGAAAGCAATCAAACATTATGCCTTAACAAATGGGAAACCAACCGCAACTCTAGCCTTTTTAGGTACCAGATTGGGTGTTAGGCCATCACCAGTGGTGGCAGCATTTTCATCTAGAGGACCAAATTTCCTCACACTTGAAATTCTCAAACCTGATGTGGTTGCGCCAGGGGTGAACATCCTTGCAGCCTGGACTGGAGAATTGGGTCCGTCAAGTCTTCCAACAGATCATAGGAGAGTGAGATTCAACATATTATCAGGGACTTCAATGTCATGCCCTCATGTTAGTGGAATTGCTGCCTTGATCAAGGCCAGACACCCAGATTGGAGTGCCGCAGCAGTTAAATCTGCTCTAATGACAACCG



gi|193217936|gb|EY196633.1|EY196633 C06_R12_038 Cotton ovule and fiber 3-5 days post anthesis Gossypium hirsutum cDNA, mRNA sequ

TCTTTCCTACTCCTCCCAT
.|||.|||||| ||||| .
GGAAGGGATGAAGAGGGGG

EST sequence (targeted fragment marked with yellow):
ATTGGGATAGTGACAGTGACGATGTATCTACAGATAGTGTTAAACGACAACAACCACGGGCCTATGGCTATGGAAAGAGGAGTGATTGGGGAAGATGACGACGATGACGAAGATGGGGACCCGCTTGTGATAGTGGCTGATGCAGATGCAAACCAAGGGATGGAGGAGCAGGACTGGGGTGAAGAAGGAGGGCAGACTGCTGATGGGGATAGGAAAGAAGGGGGAGAAGTAGGGAAGGTTAGCACTGCTGGCAGTGGAGGAGGGGGCGTGGTTGCACCAAAAATTGGGTACAGCAGTCATGGTTTCCATCCGTTTCATTCTCAGTTTAAGGGCAGGGTGTTATCATGTTGATGCTGCTGTTGCTGAACTAAACAATATGGAAATCTTTAGAAAAAAATTGGGTTTTTGTTTGTCATGTGCCCCAATCATTTGATGAATGATGAGGATTTCTTTAGTGATTGGTTTGGAAACTTTGTCCAG



gi|109885321|gb|DW514291.1|DW514291 GH_TMIRS_180_H07_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc

TCTTTCCTACTCCTCCCAT
|||||||| || .|||||
AGAAAGGAAGAAAGGGGTA

EST sequence (targeted fragment marked with yellow):
AGCTAACTCCAGTGAACAGCCGTTTTATGGGGAAAGAAGGAAAGATGGGTAGGGTTTTCGCATCTCTTGTGCTTGTTTTGGTGGTTGTGCAAGCTAGCCATGCACGTAATGTGCCTAGCCATGTCGGCCTCGATAACTGACAAACAACGATGCCAGGTGCCTCAACGGAGGAGCAAACGTTGCAAGCCGATGCACCGAAGGCGGATTCACCGAAGGGTACGAGTGGCATTGATGACAAGAAGAATTTTATTTACGGTGGAGTTGGTGGCTTTGCTGGGATGGGTGGCTATGGTGGAATTGCTGGTGGAATCCCTTTTCTTGGCGGCCTTGGTGGGATTGGGAAAATTGGTGGAATCGGTGGTGCCACCGGAATAGGCGGTTATACGGGTATCGGTGGCCTGGGCAGTTTAGGCGGTGTTGGAGGACTTGGTGGTGGTATTGGCGGTGGCGGCAGCCTCGGAGGTGGCAGTGGCATTTTCCCATCCCCTTGATGGTTCGTGATTTGGTGATGTCTAGATTTTAGGTGTTGTGATGTTAGATGTTAGATGTTTATGTCTTAAGTGGTTTAGGTTTTTTCTAGTAGTGTCTTCGGAGACAACATGTTATGTTAGCTGTCACTCGTCTTCCGTTGCAGTGTTCGCTTCAGTAGTTTCCAAAGTTCTTTCATCACAGCATGGTAATGTAATCGCATCTCAGTGTTGAGGATTTAAATCACCATTAGCAAT



gi|164313266|gb|ES848794.1|ES848794 UFL_668_93 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
||||||.||||||||| .
TGAAAGGGTGAGGAGGGGG

EST sequence (targeted fragment marked with yellow):
GGCACGAGGAGAAGCGGAGCATCCTATCTTGCAGTCAACAATTTTAATGGAATACATAAAAGGACGATCCTTGAAGACTCATATTGAGAAACTAGCTAAAGCTGGTGAGAAACATATCCCTGTGGATTTTGCCTTGTGTATTGCACGTGATGTTGCATCTGCATTGGCCGAGTTGCACTCAAAGCACATTATTCATCGTGATATAAAAAGTGAAAACATTCTGATCGATTTGGATGGAAAGAGAGTTGATGGGAGCCCTGTTGTGAAGCTCTGTGATTTTGATAGAGCAGTACCTCTTAGGTCTTCCCTGCATACATGCTGTATTGCTCATTTAGGGATACCTCCTCCAGATGTTTGTGTTGGAACACCTCGTTGGATGGCTCCTGAGGTTCTAGGCGCAATGCATAAGCGTAATCCTTATGGGCTTGTAAGTTTTTCTCTTGCCATTTTGGCATTGATTTTTGAATTGATGTTTCCTTGATTTGATGAAAATGATTTGAGTTGTATGAGCAGAGCAGATAGATTTGATGATAAATGCAAAGATGATTTACCTGGTAGATTGATGTTATGTTGCATAGAAAAAGGAGGGGGAGGAGTGGGAAAGTGGGTATAATGTTTAGAGGTAGCATTTAGGTATCAGCTGAAGTGATATGTTACTTGCTATATCTGCTTTGAGTTTTA



gi|164259167|gb|ES794521.1|ES794521 UFL_547_61 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence

TCTTTCCTACTCCTCCCAT
.||||| |||| ||| |||
GGAAAGAATGACGAGTGTA

EST sequence (targeted fragment marked with yellow):
GGCACGAGACAGTCTAACCAGCGTAAAATGGCAGCATGCGTTGGAAAGTCATCTTCCACCTCATCCGCTTCCATATTTGCTGTATCATCTGTTCCTGATACAGATTCTCAGAATAACTCAAAGCAACAAGTAATGCCTGACAACAATGTGAGCAGTAAGAAAGGTCACGCTACAAATGATGTGCCTAGGGATGGAGACAGACATGACTTATCACGTAAGGCAGTAAAAGAGCGACCAAAATCCTCTTATAGTTCTACGTCAAAAGTCCCACACCAAAGCAGGATCTCACATGCTTCCATTTCAAAAAGAAACATATCTGAGTCAAAAGATTCTGTGCCTTCCTCATCTTTAAAGGCATCTTTGATGCAGAATAGTTCAGTTACGTCAGTCTCTGGTGAGTCTGCCGGCTCACTGCAAAGTCAGTCTGCTTCTTTCATTCATCAAAACAAGACATCGGCTTCAGGTTTCCCACAGAAAGGTGAAAAGTCCAGTCAGTCAAGTTCCCAGCCAGCATCTAAGTCTGCACATGCATCATCAGTACATCCCTTTGCAACATCAAATTCCACTACTCTAAGTGATGAAGAGCTTGCTTTGCTTTTGCATCAAGAACTTAATAGTTCTCCAAGAGTACCTCGTGTTCCACGTGTGCGGCAGGCTGGGAGCTTTCCTCAGCTGGCATCTGCAACTGCCACAAGCATGCTAATGAAACGCACATCTAGCTCGGGAGGAAAGGATCACAGTATGGTCCCTAGAAGAAAAAACAAGGATGCATCTAAAGATGGGTCCCGTGGATCTCGTGAGCTTGATCATGATGCTAAAAGAACTGATAAAGTGCTATCTTCACATGATCAGAGACAAGATCTTGGTTCTACCATGGATGCTTCTGCTAAAAGGAATGGCAAGAATGTACATGCCACACCCTCCACAAGCACAAACAGTGGCCCTTCTTTCTTCAACTGAAGCTAATGAGCAAAATTTTGTCATATGTACCTAGTTTCACCTAAAAATTTTATCTGATGATGAACACAGGCAAAGCTCGGTGGTTCTGTACCTCGTACTTTACCTGGCTTGATAAATGAACTTTATAAACCAAAGGGCGGGGAATGGACTTTAGAAAAAGCTTTTTAAATGCAATCCCTTGCCGCATTTGGCCCTAACTTTGGGGAAAAAAAAAAGGGGAAAAAAAAAAAATTGGGGTATTTTCTAAATTCCTTTTTTCCAAAAACCTTTTTTTTTTTGTATTTGCCCCCTAAAAAAAAAAACCCCAAAAAAAA