| mature miRNA: TGAACTCGGTTTGTTGGCTTT species: Panicum virgatum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|197999064|gb|FL742483.1|FL742483 CCGB18077.g1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB18077 3', TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): CAAGGAAAATCTCCAGATTATTGATGTTAGAAATTCTGATCTGATTGAAGTCAACAAAACCGAGTTCATGACCCCTCAGCATTCATCTTTCTCTATGAAAACAATCTATTCTTGACATTCTGCAATAGGACAGTTGCAGCCTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGAGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTCCGAAGCAGGCCACAGATTGTGTTGACAGCGAGTCTGGAGAAGTTTCACCCATGGGATCAATTAACATGAGCAATATCTTTACGGGAAAGTGTGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACAATTGCTTCTCGAAAGAGAGATGATAAGAGCAGATCTACTATCCATAGCACTGTTTCGGAAGCTCTGGATGACATCACTGCTCTCTTCTATGATGAGGACCGCAATGAAATTTACACTGGGAACAGCAAAGGGCTGGTGCATGTCTGGTCAAATTAACCTTGATACCCACCCCACCCTTGTACATACCTCTTGTACCTTGTTTTTCCGTATAGAACAAAAATGTAATGCTCATCTGATTATAGCGGGACTGTAACTTAGACATGATATCACTGGTAGAATAATCTGAATGTAGAGTATGTTTTTGGGT | |||||||||
gi|198240853|gb|FL953448.1|FL953448 CCGP9796.b1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP9796 5', mRNA seq TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): CAACATCGTCGGTGTTGATGGCGGCGTCCAAGCACATCGCGGTCCGGTGCCGCCCGGAGAACGTGGCCTTCCTCAACTGCAAGAAGAAGGACCCCAACCCCGATAAGTGCCTCGAGAAAGGCCGCCAGGTCACGCGCTGCGTCCTCAGCCTGTTGAAAGAACTGCGCCAGAAGTGTCCCAAAGAGATGGACGCGTATGCTGGTTGCATGTATTACTACACCAATGAATTTGACTTCTGCCGTAAGGGAGCAGCAAGCTTTTGAGGAAGCCTGCCCCCATATCTGGAGTAGATCATTCAGAGTTTTACTTCAAGTGATCTTCGCCAATAAAGGAGAAAAGCTAACAAACCGAGTTCATTATCTCCCATGTTTGCTGTCCTCATGTAATTTTTACTGAATGAATAGCACACCCTGGAGCTATTCACCCCACTTGTCTCTCTCAATATTTTTCAAACTTTGAATTTGACTCAGCCCATCAGTCGTAGGTTCTAAAAATGAATGATGATGATGGGTTTCACTTGTTGTGGTTCACAAAAATACATTTGGGCGGACCTGCCCTTTGTTTC | |||||||||
gi|198051827|gb|FL779258.1|FL779258 CCGF10034.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): CAAGACAAGGAAAATCTCCAGATTATTGATAAACTTCTGATCTGATTGAAGTCAACAAAACCGAGTTCATGACCCCCTCAGCATTCATCTTTCTCTATGAAAACAATCTATTCTTGACATTCTGCAATAGGACAGTTGCAGCCTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGAGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTCCGAAGCAGGCCACAGATTGTGTTGACAGCGAGTCTGGAGAAGTTTCACCCATGGGATCAATTAACATGAGCAATATCTTTACGGGAAAGTGTGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACAATTGCTTCTCGAAAGAGAGGTGATAAGAGCAGATCTACTATCCATAGCACTGTTTCGGAAGCTCTGGAGGACATCACTGCTCTCTTCTATGATGAGGACCGCAATGAAATTTACACTGGGAACGGCAAAGGGCTGGTGCATGTCTGGTCAAATTAACCTTGATACCCACCCCCATCCTTGTACATACCTCTTGTCCCTTGTTTTTCCGTATAGAACAAAAATGTAATGCTCATCTGATTATAGTGGGACTGTAACTTAGGCATGATATCATTGGTAGAATAATCTGAATGTAGAGT | |||||||||
gi|198384347|gb|GD052010.1|GD052010 CCHZ30888.b1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): ATGATGATGAAGTCCATTTTCTTGTCCACTTGCCATTTTTGTGGACCAGAACCAAAATTATTGAAATTGTTGCTGCAAAGGATGTTATATTTGCACTTGCCCAGTCAGGTTTATGTGCTGCATTTAATCGAACAACAAACAAGCGCATATGCTACTTGAATATAAGTCCTGATGAAGTTATTAGGAGCTTATTTTATAATAAGAACAACGAATCCCTTATCACTGTTTCAGTTTGTGAATCAGATCGTTTCAGCTCGTTGAAGTGCAGAACAACTCCAATAGAGTACATCAGAAGAGGCCAATTGAATGATGGATTTCCTTTATTTGAAACTGAATCATTAAAATATCCTGGCTTTGTTGAGTTTGATGATGTTAATGGCAAAGTATTGACCTTTTCGGCACAGGATAGTACGTACAAGGTTTTTGATCTAAAGAACTACAACTTTCTGTATTCCATATGTGATAAGAACATCCAGGAGATAAAAATAAGTCCTGGAATCATGCTCGTGATATACCAGAAGACAAATTGCCATGTTCCCCTGACGATATTGTCAATCGAGGATGGAACTCCGCTGAAAACCTTCAGTCAGTTGCTGCATCGAAATAGAAAGGTTGACTTCATCGAGCAGTTTAATGAGAAGTTGCTCGTGAAGCAAGACAAGGAAAATCTCCAGATTATTGATGTTAGAAACTCTGATCTGATTGAAGTCAACAAAACCGAGTTCATGACCCCCTCAGCATGCA | |||||||||
gi|198012142|gb|FL751021.1|FL751021 CCGC4486.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virgat TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): TTGGGGGACTGCGAAAGATCTGTGCTGCATATCTACCATGACGTATACAGTATGGTCTTCGTATATGGGTGTTCAGTGGAGATACAGATGCAGTGATTCCAGTGACATCAACTAGGTACAGCATTGATGCTCTCAAGCTTCCAACAGTAACTCCATGGCATGCTTGGTATGACAATGATGGCGAGGTTGGTGGCTGGACTCAAGGGTACCAGGGACTCACCTTTGTGACTGTGAGGGGTGCAGGCCATGAAGTTCCTCTTCATCGGCCCAAACAGGCTCTCACACTCATCCAATCATTCTTGGCTGGGAGTCCAATGCCCGTGCAATCCAGTGCACACAGCGACATGTAACCTGTACTGCTACAACTGATTCTATAGATGGCCATCATCAAAGTTCCATCTCAACCAAGTTCAGTTGTTCAAACCCCACCTATTCGGCAACTTGTTGCTATGGTTGTTTATGTATCAGAGCTACTGGTGCCACTGTGACAGTTACCATAGCCGTTTATTTACTGGCTCTGCTGGTGCTTGTGCCTATTATCCCCTAAGAAAACCGGGGTAAAAAACTGTAGAATAGTTTTTGCTGCCACGGAGCTGACAAACCAAGTTCATTTGATATTACTGCGAGCCTAAGAACAAATTTGCATCAGTGTCACCATACTGTATTTGTTTACGCACAAGGTGTGATTTCTGATGTTTGCAATAATGATCTAGACTTGGTT | |||||||||
gi|304549970|gb|HO339780.1|HO339780 CFHF1610.b1 CFHF Panicum virgatum U601 normalized leaf Panicum virgatum cDNA clone CFHF1610 TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): CTGCATCGAAATAGAAAGGTTGACTTCATCGAGCATTTTAATGAGAAGTTGCTCGTGAAGCAAGACAAGGAAAATCTCCAGATTATTGATGTTAGAAACTCCGATCTGATTGAAGTCAGCAAAACCGAGTTCATGACCCCCTCAGCATTCATCTTTCTATATGAAAACAATCTATTCTTGACATTCTGCAATAGGACAGTCGCAGCCTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGTGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTTCAAAGCAGGCCACAGATTGTGTTGACACCGAGGCTGGAGAAGTTTCATCCATGGGATCAATTAACATGAGCAACATCTTTACGGGAAAGTGCGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACATTTGCTCCTCGAAAGAGAGGGGATAAGAGCAGATCTACTATCCATAGCACTGTTTCGGAAGCTCTGGAGGACATCACTGCTCTCTTCTATGATGAGGACCGCAATGAAATATACACTGGGAACAGCAAAGGGCTGGTGCATGTCTGGTCAAATTAACCTTGATATCCACTCCCATCCTTGTACATACCTCTGTACCTTGTTTTTCTGTATGAAACAAAAAATGTAATGCTCATCCTATCTGATTATAGTGGGACTGTAACTTAGACATGATATCATTGGTAGAATAATCTGAATG | |||||||||
gi|198240854|gb|FL953449.1|FL953449 CCGP9796.g1 CCGP Panicum virgatum root (L) Panicum virgatum cDNA clone CCGP9796 3', mRNA seq TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): AGATCTCCAAGGCCCAGGAGCCCCAGGGACCCTCTCGCACCCGCAGCGATGTCGGCGAGCAGCACGCCCGTGGACGCCTCGGGGGAGCCGATCCCAACATCGTCGGTGTTGATGGCGGCGTCCAAGCACATCGCGGTCCGGTGCCGCCCGGAGAACGTGGCCTTCCTCAACTGCAAGAAGAAGGACCCCAACCCCGATAAGTGCCTCGAGAAAGGCCGCCAGGTCACGCGCTGCGTCCTCAGCCTGTTGAAAGAACTGCGCCAGAAGTGTCCCAAAGAGATGGACGCGTATGCTGGTTGCATGTATTACTACACCAATGAATTTGACTTCTGCCGTAAGGAGCAGCAAGCTTTTGAGGAAGCCTGCCCCATATCTGAGTAGATCATTCAGAGTTTTACTTCAAGTGATCTTCGCCAATAAGGAGAAAAGCTAACAAACCGAGTTCATTATCTCCCATGTTTGCTGTCCTCATGTAATTTTTACTGAATGAATAGCACACCCTGGAGCTATTCACCCCACTTGTCTCTCTCAATATTTTTCAAACTTGAATTGACTCAGCCCATCAGTCGTAGGTTCTAAAATGATGATGATGATGGTTTCACTTGTTGTGGTTCACAAAATACATTTGGCGGACCTGCCCTTGTT | |||||||||
gi|197999063|gb|FL742482.1|FL742482 CCGB18077.b1 CCGB Panicum virgatum apex + stem (L) Panicum virgatum cDNA clone CCGB18077 5', TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): GATGATGTTAATGGCAAAGTATTGACCTTTTCGGCACAGGATAGTACGTACAAGGTTTTTGATCTAAAGAACTACAACTTTCTGTATTCCATATGTGATAAGAACATCCAGGAGATAAAAATAAGTCCTGGAATCATGCTCGTGATATACCAGAAGACAAATTGCCATGTTCCACTGACGATATTGTCAATCGAGGATGGAACTCCGCTGAAAACCTTCAGTCAGTTGCTGCATCGAAATAGAAAGGTTGACTTCATCGAGCAGTTTAATGAGAAGTTGCTCGTGAAGCAAGACAAGGAAAATCTCCAGATTATTGATGTTAGAAATTCTGATCTGATTGAAGTCAACAAAACCGAGTTCATGACCCCCTCAGCATTCATCTTTCTCTATGAAAACAATCTATTCTTGACATTCTGCAATAGGACAGTTGCAGCCTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGAGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTCCGAAGCAGGCCACAGATTGTGTTGACAGCGAGTCTGGAGAAGTTTCACCCATGGGATCAATTAACATGAGCAATATCTTTACGGGAAAGTGTGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACAATTGCTTCTCGAAAGAGAGATGATAGAGCAGATCTACTATCCATAGCACTGTTTCGGA | |||||||||
gi|198320355|gb|FL987350.1|FL987350 CCHY9807.b1 CCHY Panicum virgatum callus (N) Panicum virgatum cDNA clone CCHY9807 5', mRNA s TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): CAGGTTTATGTGCTGCATTTAATCGAACAACAAACAAGCGCATATGCTACTTGAATATAAGTCCTGATGAAGTTATTAGGAGCTTATTTTATAATAAGAACAACGAATCCCTCATCACTGTTTCAGTTTATGAATCAGATCGTTTCAGCTCGTTGAAGTGCAGAACAACTCCAATAGAGTACATCAGAAGAGGCCAATTGAATGATGGATTTCCTTTATTTGAAACTGAATCATTAAAATATCCTGGCTTTGTTGAGTTTGATGATGTTAATGGCAAAGTATTGACCTTTTCGGCACAGGATAGTACGTACAAGGTTTTTGATCTAAAGAACTACAACTTTCTGTATTCCATATGTGATAAGAACATCCAGGAGATAAAAATAAGTCCTGGAATCATGCTCGTGATATACCAGAAGACAAATTGCCATGTTCCACTGACGATATTGTCAATCGAGGATGGAACTCCGCTGAAAACCTTCAGTCAGTTGCTGCATCGAAATAGAAAGGTTGACTTCATCGAGCAGTTTAATGAGAAGTTGCTCGTGAAGCAAGACAAGGAAAATCTCCAGATTATTGATGTTAGAAACTCTGATCTGATTGAAGTCAACAAAACCGAGTTCATGACCCCCCTCAGCATTCATCTTCTCTATGAAAACAATCTATTCTTGACATTCTGCAATAGGACAGTTGCAGCCTGG | |||||||||
gi|198061603|gb|FL793741.1|FL793741 CCGF18298.g1 CCGF Panicum virgatum early floral buds + reproductive tissue (L) Panicum virga TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): GAACAAAAGTGATGAAAAGGCTGCATTCTGTTGGAAAATGGGAGAGCAGTATGATCCATGCACTGAAAAGCATTCAACTGTTTACTTCATCTAGCTGAGGTACAAAAGACACTTCATGTTAATCCAATGATTGGAAAGTCAAAATGGGAGACATGCAGTGAAGTTGTTAACACTCATTGGGGGGACTGCGAAAGATCTGTGCTGCATATCTACCATGACCTTATACAGTATGGTCTTCGTATATGGGTGTTCAGTGGAGATACAGATGCAGTGATTCCAGTGACATCAACTAGGTACAGCATTGATGCTCTCAAGCTTCCAACAGTAACTCCATGGCATGCTTGGTATGACAATGATGGCGAGGTTGGTGGCTGGACTCAAGGGTACCAGGGACTCACCTTTGTGACTGTGAGGGGTGCAGGCCATGAAGTTCCTCTTCATCGGCCCAAACAGGCTCTCACACTCATCCAATCATTCTTGGCTGGGAGTCCAATGCCCGTGCAATCCAGTGCACACAGCGACATGTAACCTGTACTGCTACAACTGATTCTATAGATGGCCATCATCAAAGTTCCATGTCAACCAAGTTCAGTTGTTCAAACCCCACCTATTCGGCAACTTGTTGCTATGGTTGTTTATGTATCAGAGCTACTGGTGCCACTGTGACAGTTACCATAGCCGTTTATTTACTGGCTCTGCTGGTGCTTGTGCCTATTATCCCCTAAGAAAACCGGGGTAAAAAACTGTAGAATAGTTTTTGCTGCCACGGAGCTGACAAACCAAGTTCATTTG | |||||||||
gi|198370724|gb|GD035058.1|GD035058 CCHZ18401.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): TCCCCTCGTCTGGGTCTGCCCGTCTCGCTTCCCCCCACCTCCGCCCCCAGATCTCAAGGCCAGGAGCCCCAGGGACCCTCTCGCACCCGCAGCGATGTCGGCGAGCAGCACGCCCGTGGACGCCTCGGGGGAGCCGATCCCAACATCGTCGGTGTTGATGGCGGCGTCCAAGCACATCGCGGTCCGGTGCCGCCCGGAGAACGTGGCCTTCCTCAACTGCAAGAAGAAGGACCCCAACCCCGATAAGTGCCTCGAGAAGGGCCGCCAGGTCACTCGCTGCGTCCCCAGCCTGTTGAAAGAACTGCACCAGAAGTGTCCCAAAGAGATGGACGCGTATGCTGGTTGCATGTATTACTACACCAATGAATTTGACTTCTGCCGTAAGGAGCAGCAAGCTTTTGAGGAAGCCTGCCCCATATCTGAGTAGATCATTCAGAGTTTTACTTCAAGTGATCTTCGCCAATAAGGAGAAAAGCCAACAAACCGAGTTCATTATCTCCCATGTTTGCTGTCCTCATGTAATTTTTACTGAATGAATAACACACCCTGGAGCTATTCACCCCCACTTGTCTCTCTCAATATTTTTCAAACTTGAATTGACTCAGCCCATCAGTCGTAGGTTCTAAAATGGTGATGATGATGGTTTCACTTGTTGTGGTTCACAAAATACATTTGGCGGACCTGCCCTTGTTTCTGGCC | |||||||||
gi|304543106|gb|HO340144.1|HO340144 CFHF1830.b1 CFHF Panicum virgatum U601 normalized leaf Panicum virgatum cDNA clone CFHF1830 TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): TGCAGTGATTCCAGTGACATCAACCAGGTACAGCATTGATGCTCTCAAGCTTCCAACAGTAACTCCATGGCATGCTTGGTATGACAATGATGGCGAGGTTGGTGGCTGGACTCAAGGGTACCAGGGACTCACCTTTGTGACTGTGAGGGGTGCAGGCCATGAAGTTCCTCTTCATCGGCCCAAACAGGCTCTCACACTCATCCAATCATTCTTGGCTGGGAGTTCAATGCCCGTGCAATCCAGTGCACACAGCGACATGTAACCTGTACTGCTACAACTGATTCTATAGATGGCCATCATCAAAGTTCCATCTCAACCAAGTTCAGTTGTTCAAACCCCACCTATTCGACAACTTGTTGCTATGGTTGTTTATGTATCAGAGCTACTGGTGCCACTGTGACAGTTACCATAGCCGTTTATTTACTGGCTCTGCTGGTGCTTGTGCCTATAATCCCCTAAGAAAACCGGGGTAAAAAAACTGTAGAATAGTTTTTGCTGCCACGGAGCTGACAAACCAAGTTCATTTGATATTACTGCGAGCCTAGGAACAAGTTTGCATCAGTGTCACCATACTGTATTTGTTTACGCACAAGGTGTGATTTCTGATGTTGCATAATGATCTAGACT | |||||||||
gi|198184593|gb|FL897689.1|FL897689 CCGN13573.b1 CCGN Panicum virgatum etiolated seedlings (L) Panicum virgatum cDNA clone CCGN1 TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): ATTGAGATGTTGGTTGCACCAAGGCTACCTAATTGTCGAGAAAGTAATCAAACCAAGTTCATTCTGAATTAGAATGGAAAGGTTAAGCTATTTGGTGCACTGTGCATTCAGTGAAATGATTTGGTGAGTCTCATGAAGAGGAGTCAAATGAGCGTCCATTGCAGTGATGCTACAAAACTTGCACAGATGATGCTTGACATGCTCCTGTAAACATTATATCTGAGCATAATTTCTGCGGTGAATGGACACTTACTATAGGAAATCAAAGAGTTGGAGTTGGGAATTTGATCTATTAAAAAGGCCTGTACCTTCTACTCTGGACGGGACTGCCAATCAAGCGAGCCACCAGGTTTGAGAATAAGTTGTTGGTAGTCTCTGACTCCCTCATTATTACGCCAGCTGGAGAAAAGGGAGAAACTGATGGTAGAGACATGACTGGAACCCGGGAGACTGACGAGATTGAGCCCCCACCTCAAGTTCATATGCTCTGGTGGGATGATTTCAATGATCAATTCAACAGTCACTTTGGGCATTTTGCCAGGATTCAAGAGCAGCTATGTTCAGGAGATTTTTAACCGAATAAAATTGAACTAGCAGTTGAAGACTCAATGTTGGAAAGAATGTATGGAAGTAAAGTTACTCTCTAGCAGAGCTACTTCAATTATATGACTTATATCCCTTCTTCAGTTGAAGATTATGCTTGAAGAATTGGGATGGAAGTGATTTACACTCAAGCAGAGGTACTTCAGTTGTATTATTTCTTCTCTGTCTATTGTTCATCCTCATATAGATTCTTTTTTAAGGAAAGAG | |||||||||
gi|304549971|gb|HO339781.1|HO339781 CFHF1610.g1 CFHF Panicum virgatum U601 normalized leaf Panicum virgatum cDNA clone CFHF1610 TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): TATTGATGTTAGAAACTCCGATCTGATGAAGTCAGCAAAACGAGTTCATGACCCCCTCAGCATTCATCTTTCTATATGAAAACATCTATTCTTGACATTCTGCAATAGGACAGTCGCAGCCTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGTGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTTCAAAGCAGGCCACAGATTGTGTTGACACCGAGGCTGGAGAAGTTTCATCCATGGGATCAATTAACATGAGCAACATCTTTACGGGAAAGTGCGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACATTTGCTCCTCGAAAGAGAGGGGATAAGAGCAGATCTACTATCCATAGCACTGTTTCGGAAGCTCTGGAGGACATCACTGCTCTCTTCTATGATGAGGACCGCAATGAAATATACACTGGGAACAGCAAAGGGCTGGTGCATGTCTGGTCAAATTAACCTTGATATCCACTCCCATCCTTGTACATACCTCTTGTACCTTGTTTTTCTGTATGAAACAAAAAAATGTAATGCTCATCCTATCTGATTATAGTGGGACTGTAACTTAGACATGATATCATTGGTAGAATAATCTGAATGTAGAGTATGTTTTGGGGTAATGTATTTTGGCGAAAAGGTTTTTCGCATATGGCGATTTATTCT | |||||||||
gi|198384260|gb|GD050727.1|GD050727 CCHZ30123.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): ATTGATGTTAGAAACTCTGATCTGATTGAAGTCAACAAAACCGAGTTCATGACCCCCTCAGCATTCATCTTTCTCTATGAAAACAATCTATTCTTGGCATTCTGCAATAGGACAGTTGCAGCCTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGAGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTCCGAAGCAGGCCACAGATTGTGTTGACAGCGAGTCTGGAGAAGTTTCACCCATGGGATCAATTAACATGAGCAATATCTTTACGGGAAAGTGTGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACAATTGCTTCTCGAAAGAGAGGTGATAAGAGCAGATCTACTATCCATAGCACTGTTTCGGAAGCTCTGGAGGACATCACTGCTCTCTTCTATGATGAGGACCGCAATGAAATTTACACTGGGAACAGCAAAGGGCTGGTGCATGTCTGGTCAAATTAACCTTGATACCCACCCCCATCCTTGTACATACCTCTTGTACCTTGTTTTTCCGTATAGAACAAAAATGTAATGCTCATCTGATTATAGTGGGACTGTAACTTAGACATGATATCATTGGTAGAATAATCTGAATGTAGAGTATGTTTTTGGGTAATGTATTTTTGGCGAAAAGTTTTTTCACATATGGCGATTTATTCAAAATCTGACCCAAGTTTCTT | |||||||||
gi|304515254|gb|HO313585.1|HO313585 CFHA3229.g1 CFHA Panicum virgatum K101 normalized leaf Panicum virgatum cDNA clone CFHA3229 TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): TCGTGAAGCAAAGACAAAGGAAAATCTCCAGATTATTGATGTTAGAAACTCTGATCTGATTGAAGTCAACAAAACCGAGTTCATGACCCCCTCAGCATTCATCTTTCTCTATGAAAACCATCTATTCTTGACATTCTGCAATAGGACAGTTGCAGCCTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGAGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTCCGAAGCAGGCCACAGATTGTGTTGACAGCGAGTCTGGAGAAGTTTCACTCATGGGATCAATTAACTTGAGCAATATCTTTACGGGAAAGTGTGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACAATTGCTTCTCGAAAGAGAGGTGATAAGAGATCTACTATCCATAGCACTGTTTCGGAAGCTCTGGAGGACATCACTGCTCTCTTCTATGATGAGGACCGCAATGAAATTTACACTGGGAACAGCAAAGGGCTGGTGCATGTCTGGTCAAATTAACCTTGATACCCACCCCCATCCTTGTACATACCTCTTGTACCTTGTTTTTCCGTATAGAACAAAAATGTAATGCTCATCTGATTATAGTGGGACTGTAACTTAGACATGATATCATTGGTAGAATAATCTGAATGTAGAGTATGTTTTTGGG | |||||||||
gi|198367583|gb|GD036987.1|GD036987 CCHZ9934.g1 CCHZ Panicum virgatum abiotic and biotic stress treatments (N) Panicum virgatum TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): CAAGACAAGGAAAATCTCCAGATTATTGATGTTAGAAACTCTGATCTGATTGAAGTCAACAAAACCGAGTTCATGACCCCTCAGCATTCATCTTTCTCTATGAAAACAATCTATTCTTGACATTCTGCAATAGGACAGTTGCAGCCTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGAGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTCCGAAGCAGGCCACAGATTGTGTTGACAGCGAGTCTGGAGAAGTTTCACCCATGGGATCAATTAACATGAGCAATATCTTTACGGGAAAGTGTGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACAATTGCTTCTCGAAAGAGAGGTGATAAGAGATCTACTATCCATAGCACTGTTTCGGAAGCTCTGGAAGACATCACTGCTCTCTTCTATGATGAGGACCGCAATGAAATTTACACTGGGAACAGCAAAGGGCTGGTGCATGTCTGGTCAAATTAACCTTGATACCCACCCCCATCCTTGTACATACCTCTTGTACCTTGTTTTTCCGTATAGAACAAAAATGTAATGCTCATCTGATTATAGTGGGACTGTAACTTAGACATGATATCATTGGTAGAATAATCTGAATGTAGAGTATGTTTTTGGGTAATGTATTTTTGGCGAAAAGTTTTTTCAC | |||||||||
gi|198070833|gb|FL798831.1|FL798831 CCGG2131.g1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TGAACTCGGTTT-GTTGGCTTT EST sequence (targeted fragment marked with yellow): ATTATTGATGTTAGAAACTCCGATCTGATTGAAGTCAGCAAAACCGAGTTCATGACCCCCTCAGCATTCATCTTTCTATATGAAAACAATCTATTCTTGACATTCTGCAATAGGACAGTCGCAGCGTGGAATTTCCGTGGAGAGCTAGTTACATCATTTGAGGATCATGTGTTATGGCACCCTAACTGCAATACAAATAATATATACATCACTGCTGACCAGGACTTGATAATCTCATATTGCAAAGTTTCAAAGCAGGCCACAGATTGTGTTGACACCGAGGCTGGAGAAGTTTCATCCATGGGATCAATTAACATGAGCAACATCTTTACGGGAAAGTGTGTTGCGAAGATCTCCCCCAGTGATCCTACTCTCACATTTGCTCCTCGAAAGAGAGGTGATAAGAGCAGATCTACTATCCATAGCACTGTTTCGGAAGCTCTGGAGGACATCACTGCTCTCTTCTATGATGAGGACCGCAATGAAATATACACTGGGAACAGCAAAGGGCTGGTGCATGTCTGGTCAAATTAACCTTGATATCCACTCCCATCCTTGTACATACCTCTTGTACCTTGTTTTTCTGTATGAAACAAAAAATGTAATGCTCATCCTATCTGATTATAGTGGGACTGTAAATTAGACATGATATCATTGGTAGAATAATCTGAATGTAGAGTATGTTTTGGGGTAAA | |||||||||
gi|59865313|gb|DN144456.1|DN144456 4821_B02_C03 Switchgrass stem cDNA library Panicum virgatum cDNA clone 4821_B02_C03 5', mRNA TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): CCAGGAGCCCCGGGGACCTCTCGCGCCCGCAGCGATGTCGGCGAGCAGCGCGCCCGTGGACGCCTCGGGGGAGCCGATCCCGACGTCGTCTGTGTTGATGGCGGCGTCCAAGCACATCGCGGTCCGGTGCCGCCCGGAGAACGTGGCCTTCCTCAACTGCAAGAAGAAGGACCCCAACCCCGATAAGTGCCTCGAGAAGGGACGCCAGGTCACGCACTGCGTCCTCAGCCTGTTGAAAGAACTGCACCAGAAGTGTCCCAAAGAGATGGACGCGTATGCTGGTTGCATGTATTACTACACCAATGAATTTGACTTCTGTCGTAAGGAGCAGCAAGCTTTTGAGGAAGCCTGCCCCATATCCGAGTAGATCATTCAGAGTTTTACTTCGAGTGATCTTCGCGAATAAGGAGAAAAGCCAACAAACCGAGTTCATTATCTCCCATGTTTGCTGCCCTCGTGGAATTTTTACTGAATGAATAGCACGCCCTGAAGCTATTCACCCCACTTGTCTCTCTCGATATTTTTCAAACTTGAATTGACTCAGCCCATCAGTCGTAGGCTCTAAAATGATGATGATGATGGTTT | |||||||||
gi|198125696|gb|FL851898.1|FL851898 CCGI1879.b1 CCGI Panicum virgatum etiolated seedlings (H) Panicum virgatum cDNA clone CCGI18 TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): CCGCGGAGCTGACAAACCAAGTTCATTTGATATTACTGCGAGCCTAAGAACAAATTTGCATCAGTGTCACCATACTGTATTTGTTTACGCACAAGGTGTGATTTCTGATGTTTGCAATAATGATCTAGACTTGGTTAGCTGTAATGTAATACTCTTGTGTTGCACCTTTGTGAGATGTATTATTTCCACGTTAGAGGTCTTCATGGTTTAGAGACACATGGCTCTGATGAACTGTAGTAAATGATTATCCTACTTGCAATCTGAATGCTGATCTTT | |||||||||
gi|198203586|gb|FL914750.1|FL914750 CCGO9090.g1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO9090 3', mRNA seq TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): AGCTTCCAACAGTAACTCCATGGCATGCTTGGTATGACAATGATGGCGAGGTTGGTGGCTGGACTCAAGGGTACCAGGGACTCACCTTTGTGACTGTGAGGGGTGCAGGCCATGAAGTTCCTCTTCATCGGCCCAAACAGGCTCTCACACTCATCCAATCATTCTTGGCTGGGAGTCCAATGCCCGTGCAATCCAGTGCACACAGCGACATGTAACCTGTACTGCTACAACTGATTCTATAGATGGCCATCATCAAAGTTCCATCTCAACCAAGTTCAGTTGTTCAAACCCCACCTATTCGGCAACTTGTTGCTATGGTTGTTTATGTATCAGAGCTACTGGTGCCACTGTGACAGTTACCATAGCCGTTTATTTACTGGCTCTGCTGGTGCTTGTGCCTATTATCCCCTAAGAAAACCGGGGTAAAAAACTGTAGAATAGTTTTTGCTGCCACGGAGCTGACAAACCAAGTTCATTTGATATT | |||||||||
gi|198070392|gb|FL797662.1|FL797662 CCGG1469.b1 CCGG Panicum virgatum late flowering buds + seed development (H) Panicum virgatu TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): GTTCAGTATCATATTCAACCAAATGTGTACACTTTCTCTATCATGATACATTCACTTTGTAAGCAGAATAGATCAGAGGAAGCTCTTGGTCTTCTGAGGGAATTGAATATGCGGGAAGACATTGCTCCAGGAACGTTCATATATAACCCTGTGATTGATATACTGTGCAAGGGAGGAAAAGTGGATGAAGCAAACTTGATCCTATTGGATATGGAAGATAAAGGGTGTCATCCTGACAAGTATACATATACTATTCTAATAATTGGGCACTGTATGAAAGGTAGGATATCAGAAGCAATCACCCTTTTCCACAAAATGGTGGAGACTGGGTGTTACCCTGATGATATTACGGTTAATTCTTTTATTAATTGTGTTTTGAAGTCTGGGATGCCTAATGAGGTGGATCGCATAATGCTTATTGCTTCAGGACATGCTTCATCTAGTCAGAAAGTTTGTTCTCGCCAGAGCCAAAGACTAGATATGTCAATTGCTGTATAGTTGAATCATACTAAAACAGAGAATGCAGGGAAGAGCGCCTTAACTGTATCCGGTGCTTATGGCATCGTAGAACTGGGACATATCTCGATGAGAGCAACAGACTCCGGACATTCATCTGAAAGAAACTCAAGTGTAAATATTGAGATCTTGGTTGCATCAAGGCTACCTAATTGTCGAGAAAGTAATCAAACCAAGTTCATTCTGAGTTAGAATGGAAAAGGTAAAGCTGTTTGATGCACTATGCATTCAGTGGAATTAATTTTGGTGGAGTCTCATGAAGAGGAGTCAAACATTATTA | |||||||||
gi|169680734|gb|FE611235.1|FE611235 CBYX980.g1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX980 3', mRNA TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): TTCGCGAATAAGGAGAAAAGCCAACAAACCGAGTTCATTATTTCCCATGTTTGCTGCCCTCGTGGAATTTTTACTGAATGAATAGCACGCCCTGAAGCTATTCACCCCCCTTGTCTCTCTCGATATTTTTCAAACTTGAATTGACTCAGCCCCTCAGTCGTAGGCTTTAAAATGATGATGATGATGGTTTCACTTGCTATGGTTCACAAATTACATTTGGGGGACTTGCCCTTATTTTTGCCCTAGTGCTGCT | |||||||||
gi|198027245|gb|FL768270.1|FL768270 CCGC14615.g1 CCGC Panicum virgatum early floral buds + reproductive tissue (H) Panicum virga TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): CTGCATTCCTGTTGGAAAAATGGGAGAGCAGTATGATCCATGCACTGAAAAGCATTCAACTGTTTACTTCATCTAGCTGAGGTACAAAAGACACTTCATGTTAATCCAATGATTGGAAAGTCAAAATGGGAGACATGCAGTGAAGTTGTTAACACTCATTGGGGGGACTGCGAAAGATCTGTGCTGCATATCTACCATGACCTTATACAGTATGGTCTTCGTATATGGGTGTTCAGTGGAGATACAGATGCAGTGATTCCAGTGACATCAACTAGGTACAGCATTGATGCTCTCAAGCTTCCAACAGTAACTCCATGGCATGCTTGGTATGACAATGATGGCGAGGTTGGTGGCTGGACTCAAGGGTACCAGGGACTCACCTTTGTGACTGTGAGGGGTGCAGGCCATGAAGTTCCTCTTCATCGGCCCAAACAGGCTCTCACACTCATCCAATCATTCTTGGCTGGGAGTCCAATGCCCGTGCAATCCAGTGCACACAGCGACATGTAACCTGTACTGCTACAACTGATTCTATAGATGGCCATCATCAAAGTTCCATCTCAACCAAGTTCAGTTGTTCAAACCCCACCTATTCGGCAACTTGTTGCTATGGTTGTTTATGTATCAGAGCTACTGGTGCCACTGTGACAGTTACCATAGCCGTTTATTTACTGGCTCTGCTGGTGCTTGTGCCTATTATCCCCTAAGAAAACCGGGGTAAAAAACTGTAGAATAGTTTTTGCTGCCACGGAGCTGACAAACCAAGTTCATTTGATATTACTGCGAGCCTAAGAAC | |||||||||
gi|169668744|gb|FE598231.1|FE598231 CBYX1480.g1 CBYX Panicum virgatum Kanlow callus Panicum virgatum cDNA clone CBYX1480 3', mRN TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): CAGGAAGCATGGGTTCTTCATACCTGACAGTGAAATACTTGAAGGGATCCCCATGGTCTTCTTATCCCACGTTGGATTGAAGGTGAAGCGGGATTTTATCTGCCTCTACTGCAATGATAGGCGCCAGCCCTTTCAGAGCCTAGAGGCTGTCAGGAAACACATGGATGCAAAGGGTCATTGCAAATTACGGTATGGAGATGGCGGGGAGGATGAAGATGCCGACCTGGAGGATTTCTATGATTACTGCAGAAGCTATACCGATGTCGAAGGTAAGCAGTTGGTTGCTGCTGGCGATGTTAACAACAACATCGAGCTTGGAATTGGCGGGTCTGAGCTAGTAATCACAAACAAGACTGGTAAAGGGACTCGTGTGAGAGCTCTTGGTTCTCGAGAATTTACCCGCTACTACCGCCAGAAACCACGGCCTTTTGCGGTGACAAAATGTGCCCTTGCACTCTCCCTGGCATCCAGCTACAAAGAGCATGGATTTGGTGACAGTTCAGTTTAAGGATGAAAGTTGTTTGAGCAATTTCAGTTGCAAAGAAAGTCTGTGAGCAATGAACATGAGTGAGGCCGACGAACCGAGATCGGTGCGAAGAGCAGTTTGATCCAAAACCAAAACCGAGTGTACTAGTGTCAAGCTGTGACAGGAGCTTCACCATGACGCTTTTTATGGTGTCTTATGTTTATTTCTGTCCACTGCTGACATATTTTTTTGTGCTTACGACCGGTCTACATTTC | |||||||||
gi|304446568|gb|HO246298.1|HO246298 CCTW2301.b1 CCTW Panicum virgatum Carthage normalized leaf Panicum virgatum cDNA clone CCTW2 TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): AAAGAACTGCACCAGAAGTGTCCCAAAGAGATGGACGCGTATGCTGGTTGCATGTATTGCTACACCAATGAATTTGACTTCTGTCGTAAGGAGCAGCAAGCTTTTGAGGAAGCCTGCCCCATATCCGAGTAGATCATTCAGAGTTTTACTTCAAGTGATCTTCGCGAATAAGGAGAAAAGCCAACAAACCGAGTTCATTATCTCCCATGTTTGCTGCCCTCGTGGAATTTTTACTGAATGAATAGCACGCCCTGAAGCTATTCACCCCACTTGTCTCTCTCGATATTTTTCAAACTTGGATTGACTCAGCCCATCAGTCGTAGGCTCTAAAATGATGATGATGATGGTTTCC | |||||||||
gi|304496054|gb|HO296889.1|HO296889 CFCA4392.g1 CFCA Panicum virgatum Sunburst normalized leaf Panicum virgatum cDNA clone CFCA4 TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): TCTATAGATGGCCATCATCAAAGTTCCATCTCAACCAAGTTCAGTTGTTCAAACCCCACCTATTCGGCAACTTGTTGCTATGGTTGTTTATGTATCAGAGCTACTGGTGCCACTGTGACAGTTACCATAGCCGTTTATTTACTGGCTCTGCTGGTGCTTGTGCCTATTATCCCCTAAGAAAACCGGGGTAAAAAACTGTAGAATAGTTTTTGCTGCCACGGAGCTGACAAACCAAGTTCATTTGATATTACTGCGAGCCTAAGAACAAGTTTGCATCAGTGTCACCATACTGTATTTGTTTACGCACAAGGTGTGATTTCTGATGTTTGCAATAATGATCTAGACTTGGTTAGCTGTAATGTAATACTCTTGTGTTGCACCTTTGTGAGATGTATTATTTCCACTTTAGAGGTCTTCATGGTTTAGAGACT | |||||||||
gi|198203796|gb|FL917092.1|FL917092 CCGO10770.g1 CCGO Panicum virgatum root (H) Panicum virgatum cDNA clone CCGO10770 3', mRNA s TGAACTCGGTTTGTTGGCTTT EST sequence (targeted fragment marked with yellow): ACAGCGACATGTAACCTGTACTGCTACAACTGATTCTATAGATGGCCATCATCAAAGTTCCATTTCAACCAAGTTCAGTTGTTCAAACCCCCCCTATTCGGCAACTTGTTGCTATGGTTGTTTATGTATCAGAGCTACTGGTGCCCCTGTGACAGTTACCATACCCGTTTATTTACTGGCTCTGCTGGTGCTTGTGCCTATTATCCCCTAAGAAAACCGGGGTAAAAAACTGTAGAATAGTTTTTGCTGCCCCGGAGCTGACAAACCAAGTTCATTTGATATTACTGCGACCCTAAGAACAAGTTTGCATCAGTGTCCCCATACTGTATTTGTTTACCCCCAAGGTGTGATTTTTGATTTTTGCAATAATGATCTAGCCTTGGTTT | |||||||||