| mature miRNA: TGAAGAAAATGAAGTTGTTCT species: Picea glauca database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|225917446|gb|GO370976.1|GO370976 GQ04013.SP6.r_L18 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ0 TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): GAAGCCAATGTTGTCTTGCACTGGTTCAGATGAGGAGAAACCAATGTAGACAACATACTCTTTGACATACAATCTTGACTTTTGTTCAAGGCATGAAAGATGGTACCAATTTATCAAATCCTCATTTGCCCCTTCTGTACCTCTATTTTGCAGATAATGGTTTTATCTTATGCACGTGAAGGGGTAGCTTTTTTCCCTCTGAATTTAGCAGGCACTTAAACGTGGAGGTCAGGGTACAGTATTGTGGAAAACAATTGTCTTTTGAGAGCAACAGTCCTTCAATCAAAAATTCTTTATTCAACCCGGGCATGAATGAAAGTGAAGAATAGAATTACATGGAAAGCGTGGAAAATCATTTTTGAATATGGAATCATGTGAATTAAGCCGGAGACAAATAGGCCTGTTCATTTGATTACAGGATTCATTCTACTTTTCATGTTGCGATCTCATGAAATATTTATTCTTAAGAGAGAGTTCTTTGTATTTCAATATTAGATTGTGATATCTCTGCACTCGAGTCATTATAGTATCTCTTATAGTTCTGCATTCCTTGTGGCCATGCTCGATGCATATTGTAATTCTCCAGTGTGGCATTCAAAAGGAGTGGGATGTCAGCCTTGACAGATCAAGCTTTCTCAGCATGGTTCTCTGGAAATGGCAAAAGCATCCGATGGCAATTTCATTATCTTCAATATTCTATTCTCTTACTGAATAGTTAATTGTCATTACAGTCATCACTTTCCTTTTATTCAATTATAGTCTTCTTCCTTAAAAAA | |||||||||
gi|225909149|gb|GO361775.1|GO361775 GQ03219.B7P1_G17 GQ032 - Shoot tip (Normalized library) Picea glauca cDNA clone GQ03219_G17 TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): TTGAAAGAATTGATAATACAATACATCTATGAGGGATATTTCTTGAGTTTTCCCTCCTACAACTCTAGATTGTCTTATAGAATTAAAGACTACATCTACTTTACATTGATTACATTAAATGACTACAACCGACAGATGAGAGTGAATGCTCAATATCTGCATTACAATCCCCAAACATTTAAGATTCATTACATCCTTCCAGCTATTACATTAATGTTTCATCTTTTGAATTCAAAACATTTTCAAAATGCGTGCTAGTGCATATCCAACTGTCCTCCACTTGCGCTTTCTTTGTTGGCGATGCTCCTGCATCAATTCTACCTCTCCAAGTTCAACATACATTGTTTTATAACAAATTCATTTTCTTGGCATTTTGATAGAATGATGCATTATAAACATAATTCAAAGGAGTATTCTTCCTCTCTAAACAACTGGAAGGCAAAGTGTGAACTAAAGGAAAACAATAGTATTGAATGGAAGAAGAAAATTGCAAGTCTACAATCAACAATTATGAACCAAACATAAGAATCAAATAGAACAATAAACAACAAAGATCATGTAATTGATGGATTAGAAAGTGAGCTATCCAAAATTGAAAAAGAATCTAAGAGGGAGATTGATAATACCAAGGAAAGTTTTGAAAATACAATGGATACATATGAAAACACTATTACAAAACTTCAAGAAGACTTGAGAAGAAGATTGGAGATTTTGAATATACCTCCATTGCAAACTGAAAGTAATCCAGTTGTGGATGAATTAAAAAAGAGTTTGAAGGACAAAGAGGAACTTATTGAAATTTTAAAGGCTCAATTTGAAAAAAAAAGTGAAAGAGGAACATGAGAATCATAAATAAGAGGTTTGAATAATATAAGAACATAGTGACCAGTTTGAGGAAGCAAACTATTACGCTAGGTAATAAGTTTAAACAAATATAGATCACAATTTTCAACAAAAAA | |||||||||
gi|225919402|gb|GO370283.1|GO370283 GQ04007.SP6.r_F19 GQ040 - Shoot tip - Active growth (Normalized) Picea glauca cDNA clone GQ0 TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): GGCAAATGGTATAAAATACCCGCCATGCCACCTTCTAAACCTAGGGTTGCTATGATAATAGCAGCCATTGGTATTGTTATTGGCCCGGACTGTTTCGACTGTTTGGAATTTCCCAACCTTGTCATGAAATGTTTCCAAAATTCCAAGACTTGCAAATCTTGGAAGGAAATTTGGAAGGAAATTTGGAAGGAGATTACAAAGAAAAATAAGTTTAAGGTTTTGGCACCACTGATAGGTTTAGAAGTATGTGCAGTAGTAGCAGGAGCTCGAGCTCTAGGTCTAGGTCTAAACAAGCCTATTGGGAGGTGGGTGTATTGTGCTCTGCAAGTCCTGGTTTGGGTCAAGTGGGGAATCGGCAGTCATCTGCTTGGCTTGTATTCGCCCGATTATGATGACATACGGCGTTTGGGTCCCACACAGTCCCGTTTGCTAGATGGTGCTGGTAGTAAAGTGTACTCTTCGGCATTCCTCCTCAATGTTGTCTTGGCAGGAGTTCGTGGCAATTGGGGAAAGCAAAGCGCTGATCTCTAGAAGAATGTCTCCATTTTCTTCATCATCGCATTGAGTAGGCCTTCAAGGTCTAGTATTATGGTGCAGTATTAATGGATAAACATTATCATTATTATAATATCTGGGTTGGTTATATTGTAATACCTTCACTAAAGGTAGGCCGGTTATATTGGAATCACTCTATTTATATTTATATTGTAATATCCAGGCAGTAGGCTATATGGTAATCATTTCAGTTATATTGCAAATATCCAGGCAGTAGGTTATATTGCAAAAAA | |||||||||
gi|211873819|gb|CO482387.2|CO482387 GQ0197.B3_J06 GQ019: Clean ROOTS systems - P treatments Picea glauca cDNA clone GQ0197_J06 5 TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): GTAATGTAAGGTAGTCTCTCTGTTTCAGGTTTTACTCGAATGATTTGAGCAAATCCCTTTCCCATTCAATAAAAATTCTTCTCTCTGCTCTGTTTTTGTGATTCTGCCAGGTTCTGGACTGGTACATGAAGCCATCAGGTATATCAGGGAAAGAAGGAATGGCTTCATTTTCTGAACTTTTACTTTGGTCTTCAACTTCTTAGGGAAAGAAGGAATGGCTTCATTTTCTGCACTTTTACTTTGGTCTTCAACTTCTTAGCTTTTTACTCCCTGTGCAGTGTTGATTCACCAAAATAAAGGGTGAAACGGATCTCTTTCGTAGATTCACTTTTGTATATGATTGAAGTTTTATTTTCGGCATTCTCAGAGGAGAAAGGTTAAGGGGTCAGCGTAGATGTGTCATAGTATTATTTTACAACGCCACGTTGGGCAAAAGTTACTGGTGTGTGACTTTTATTTCTTCAAATAAAAGAAGAATTTTCAAAAAA | |||||||||
gi|225918414|gb|GO368751.1|GO368751 GQ03817.SP6.r_P09 GQ038 - Stem - Active growth Picea glauca cDNA clone GQ03817_P09 3', mRNA TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): GAAATATATTACCCAACCATCCTATTATATTTTCTCTGAGGTTGCTAAGTCTGGATCAATAACCAAGGGACAAAGGGATAAAGCTTGGGATGAACTGCAAACTGTGATAGAGCAAGGGAACAACCGCTTCATTTTCTTTGGTTCAGATGCTCAAGGTGCCATGCATGCAGGCAGGGTGGAGAATCGAATAAAGAGGCCATTTGTTAAAAAGGATTGGAGGTTCGGTCACTACAGACCAGATGGATTACAAGATCCAGTGAGTCGTACCATGAGATGGATATGTAGGGCACCGCACATGATATCCACAAGGCAAGAGGGATCGTAAAGTAAGGCGGGCTTACAATAATCTTAAAATTAAAAAGAAATTTGTATATATTATGCATATATAATGTGTATATAAATCACTGTAATCTCAAAAAATAGAAAAGAAATATAATCCGAAGAATAGAAAATATATAATAATAATAATAATAATCTAATTTTAAGGTCCTAGTCCAGTTAGCTAGACAACAAATTGATGTATGAGATCCCTTTATATATAAGGAAAGCTAATGTAATTTTCAGGTGTCAAGCATGCCTGTTGCATAAAACATTATAAATGACTGAAAGAAAGAAAATTGACTTATACTTAAATTTCTCAATTTAGCATTAATAGGATTGGTGATGGACAGTATTTGTAAATGATAATGTCATGGCCCTTCTTGAATAAGATAATTATTTTTTCAAAAAA | |||||||||
gi|211894234|gb|CO479504.2|CO479504 GQ0185.T24_D11 GQ018: Clean ROOTS systems - N treatments Picea glauca cDNA clone GQ0185_D11 TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): TTTTTTTTGTACGTATCAATGGCCGTGTGTTTTGTAATCGGCCTCGCTTACAGAAGATGCTCTGACACTAAACATCTGGAGCAAGAATTTGATGTAATGTAGAGTTCTTTTGTTGTGGCCAGTTTCTGTAATCACTTCACCATTTCAGACAATCAAATTGCAATCTCTATAGCTAGACCCATCTGTTGAGATTTTCTTATCCAGTATTTGTTGTAGAAATTAGAAATAGCGTTCGGTGGAACAAATGCAGTTTCTTCATGACTATTTAATTGAAATTCTCTGATAATAACTTACAAGTGTATCTTCTTTTTGTAAAGACTGCCTCTTCCTTCG | |||||||||
gi|211892613|gb|CO473740.2|CO473740 GQ00411.TB_D13 GQ004: Non-lignified secondary xylem from mature trees Picea glauca cDNA clon TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): GTGTTGAAAACGGGGATGAGTTTTCCAAACATTAATAATTTGTCAGAAAGACATTTCTTGGAGAAATATGTTAATTCCAATGCAGAATCCTTCTCCGTTCTAAGTGATATTTACCATGGGGGGAAAGCTGGAAAGTTCGTCAGGGACAAGGAGGCATGCAATGAGCCTGTCTCAGTCAAAATGAAGGCTCCACTTTGTAAAATCTCCATGGCTTCCTTGGCACAAGAAAAGTAGGGTGCTTGTAACATGAAATTCATACAACTGCCGCTGAGCATTCTTGAGGAGCGGATTTAAAAATAGGAGTGATCGGAGAGCATTGCTTCATTTTTTTCAATTCGAAGTACAATTCACCGTCCTTCTGCCCTCCGTTCCCTTTCAATGCATAATTAGACTTCTAATATCAGCATGAGAAAGATAAGTAACAGACATTGATTTATCATGAACAGGGCACCTTATGTTGTTTGTTGTGACTTTTATTTATTTATGTAGACAGCTTGCTGTCTCACAGAGTTCAGGCTGCCTCCGCATGCATACTTGTCTAACCAGCAAGGGCCTCATGTTTGCAAAACATAGACTTGAAAAGCACTCGTATCAATTAAGAATATTTTCAATTCTCT | |||||||||
gi|255779994|gb|GR954808.1|GR954808 GQ03919.SP6.r_J17 GQ039 - Stem - Dormant Picea glauca cDNA clone GQ03919_J17 3', mRNA sequen TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): TCTCTGCGGCAAGGAAGACAAGATGCACGGAGATTCATATTTTCTGCTTTCTGGGCTAGCCTGGCATTGGGTATCATGACTTTTGTACGTATCAATGGCCATGTGTTTTGTAATCGGCCTCGCTTACAGAAGATGCTCTGACACTAAACATCTGGAGCAAGAATTTGATGTAATGCAGAGTTCTTTTGTTGTGGCCAGTTTCTGTAATCACTTCACCATTTCAGACAATCAAATTGCAATCTCTATTGCTAGACCCATCTGTTGAGATTTTCTTATCCAGTATTTGTTGTAGAAATTAGAAATAGCATTCGGTGGAACAAATGCAGTTTCTTCATGACTATTTAATTGAAATTCTCTGATAATAACTTACTAGTGTATCTTCTGTTTGTAAAGACTGCCTTCTTCCTTTCGTTATTTATTTATCCTGCCTTTTCTCTGCAAAAAA | |||||||||
gi|292515206|gb|GW737218.1|GW737218 WS04915.CR_I02 WS-CBM-34 Picea glauca cDNA clone WS04915_I02 3', mRNA sequence TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): GGGGCAGTCCATGTAGGGAAATCTATCTTGATTTTCTGTCTCAAGTTGCAAATATTCCGCAGCATGGGATAGCTTAGTGGTTTTGGAATTCTTTTGGAATCGGTGGCATTCTTATGATGATATTTATCAAAGGTGCTTGTAAGTTACGGTTCTCCTAAACGAAATCATATGTAAATCCGAAATGTCTTTTAAGTTTATATTCCTCTAAGTGAGGAGTTCAATTTCATTTTTTTTATTATTACAAGGTATTAGCAGTGGAAGCTGTTCTTTGATGTCTGGAGGGAAAGCAGCTTCCCCATTATGTGCTGAGGCAAATATGTCTCGACTCTTGCGATGGTTTAACTGGTCCAAAAATTTCAGTGCTCATAATTTTTTGTCAATATCATAAACGGGCAAATCCTGCCCATCTGTATGCATATATTAAACCTTTAAGAATGGAAATAACATCAAAGTGACGGTAGTACTATTTAGACGGCACCTTTTCGTATTTGCTGCAAATGCAAGGTGCTGAACTTATTTATGTACATTTTGTTCTCCCTTTATACTGTATCGGAAACTTTTTTAATCTCTAAGGTTTCCAACTCAATAAAAAAAAAAAAAAAA | |||||||||
gi|225909276|gb|GO363458.1|GO363458 GQ03316.SP6.r_B04 GQ033 - Terminal leader (Normalized library) Picea glauca cDNA clone GQ033 TGAAGAAAATGAAGTTGTTCT EST sequence (targeted fragment marked with yellow): CATAGTCATAGAGAGTGCTGGACTGCATGGTGGTAACTTGTGTAGCTACTAGTTGATTGCAGGATGGAGACATTGTGTCTCTGGATAGTAGTTGTGTGCTACTTGGAGTGGTTATGTACCACTGGATAATAGTGGTGTACTACTATGGATCGACACAGTCATGTTCTACTGGATGACATTGTAGTAGTTGTGCGCTACTAGCTAATTTCCATGGAGACTACCAGTTCACATTGGGAGTAACTAAGTGCTACTTGATTGCAGAGACTATGACAAGATGATTCGGGCTACCGATGGCATTGTGGCAGTTGTGTGCTACCAACTAATTGTAGAGTAGTTAGTGGACTACTAGATAAAGACATCATGAAAGATCCCTTCGTGGCTAAGAGGGAATGTTGATGTTTTGGTAGCTGTGGGCTAAGTCCCCTTGTTTGAATTCGAATTCGAGTTCGATGCCCTTGAAGTTCGACAAAAATTCGATAGTGAAAATTTTTAGGATAAAATTCGACAGACTACAAAATTTAAAAATTTAAAAATATATGAATAGAATAAAGATAAAAATGAAATATATGTAATTAAACACATAATAGAAATTAAAATAGCATGCTAACATGTTTAAAGAGATATTTCAAGTGACAAGAACACATCATTTTTTTCAAAATTTAAAAACTTGTTCAGGAAACATAACATTAAAAATATGAACATAATATTAAAAAGTTTTTCCCAATTGAGCTTCCAAAAAA | |||||||||