| mature miRNA: TGAAGAAGACTTGGAGCTTCGA species: Pinus taeda database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|70975434|gb|DR744388.1|DR744388 RTCU1_22_D07.b1_A029 Roots plus added copper Pinus taeda cDNA clone RTCU1_22_D07_A029 3', mRN TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): TTCCTTCGTGCCGAATTCGGCACGAGGCCTCGTGCCGAATTCGGCACGAGGGGATAGTCAAAATTGTGATTATTAAGAAGTTCAGTGATAGTCAAATATTTCAATGTTTAAACGACTACAGAATTGTCACGGCATATTAAAATTGTTGCCCTGAATTTAAATACAATTCATAAGCATGGTATAGACTGCTTTGAGGGGTAGCCGCAGCTTCTATCCCCAGACTACTGATAGAAAAATCAGAATAACAGAGCACAACAAGGAGACAACTTATATTGTAGCCTAGTTACATTTTCAAGGTACTGTTACAAAATAGATAGATGCTCCGAGTCTGCTTCACATGTACATTTTACTCCTCCATGGAATGTTCTTTTTGCTGCTTAAAGATCGAAACTTTAACTTTCATCTTCTCTGCCTTTGTTGGCAATGTAAGCCCAGGCTCTTCTTGCATAGCAAGCGGAGCTTTGACCAAATGAATACCCTGCTCCAATTCTCTAGCATCCTCTTTAATTTGTTTAGCTTTATTGCCCTTCATCCTGTTCTCCCATAATTTGGCCTCCCTGCTAATACGAACTTCCGCAATCTTCTTGATGGCCTTCAAGGTATTTTGAACAACATTTCTATCATATCTCTCAGGCCTGTTTCTTCTTCTCTCAAACTCAAATGTTGTGTCCTTAGTAAGCTCTTTTCCATGTAGCTTTCTGTATGCTTTGGTCCACTTCACCTTTCGCGGGTTACGCTTCATTTTGAAA | |||||||||
gi|68085233|gb|DR178781.1|DR178781 RTMNUT1_14_A05.b1_A029 Roots minus micronutrients Pinus taeda cDNA clone RTMNUT1_14_A05_A029 TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): AATATGACAATGTTCCTGCAAACTTAGAAACCGAAATGTAAAATAATGAAAGAAAAGCTTGTAGGTGGTAGGGTTTGTTCAAGTTGATGAATTTTAAAACATTCAACATCATGTAAATAGATCCCAATGGCTGTTCCAATAGCCTTCGTCATCATTCAAGTTGTAAATATCATCATCAGTGCTTTGGCAGATGTTTCTAAAAACATTTTAACGTGCAGATAAAGAACAAGTGCGAGAAATGTCTCTTTTGACATTCTCTTATGTCACACATAAGGAAGTACAATCACATAGCTTCTCCTACGAACTAGCAGAATTTGGCAACAAGTACAACGATGAATAGCTAACCAGTGCTGCTAGAAATATAGATACGGTGGATGTTGTTGATTGCAAGTTTTTTCCTGCAAGTTGGGCATCTCTTCCATCGATGTATAGCATTTGTAATGCATTTTTTACAGAAGATGTGCCCACATATAGTTGATGTCTCCTCCTCCATCGTGGATATACAAATTGCACATGTGAGCTTAACTTCCTTTGATTCATCAGATTGAACATCACTGCTTAATTGCTGTCCAGTCCTCCTCTTCTTGGAAGAACTTTGATCAGCTTCTCCAGCATCATCACAAAGAACAATTGGCTTATTTGGAGGAACTCTACCATGCCTGCGACGGGGATTGTGCTCTGCTGATGTCCTTCCTGTAACTGCCAGTCCAAGTCGAAGCTCCAAGTCTTCTTCATTTACT | |||||||||
gi|34352944|gb|CF394527.1|CF394527 RTDS2_6_D09.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus taeda cDNA clone RTDS2_6_D TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): CCCAATGGCTGTTCCAATAGCCTTCGTCATCATTCAAGTTGTAAATATCATCGTCAGTGCTTTGGCAGATGTTTCTAAAAACATTTTAACGTGCAGATAAAGAACAAGTGCGAGAAATGTCTCTTTTGACATTCTCTTATGTCACACATAAGGAAGTACAATCACATAGCTTCTCCTACGAACTAGCAGAATTTGGCAACAAGTACAACGATGAATAGCTAACCAGTGCTGCTAGAAATATAGATACGGTGGATGTTGTTGATTGCAAGTTTTTTCCTGCAAGTTGGGCATCTCTTCCATCGATGTATAGCATTTGTAATGCATTTTTTACAGAAGATGTGCCCACATATAGTTGATGTCTCCTCCTCCATCGTGGATATACAAATTGCACATGTGAGCTTAACTTCCTTTGATTCATCAGATTGAACATCACTGCTTAATTGCTGTCCAGTCCTCCTCTTCTTGGAAGAACTTTGATCAGCTTCTCCAGCATCATCACAAAGAACAATTGGCTTATTTGGAGGAACTCTACCATGCCTGCGACGGGGATTGTGCTCTGCTGATGTCCTTCCTGTAACTGCCAGTCCAAGTCGAAGCTCCAAGTCTTCTTCATTTACTATTGGTATGCGACTACTTC | |||||||||
gi|57886256|gb|CX651427.1|CX651427 COLD1_52_G09.b1_A029 Root cold Pinus taeda cDNA clone COLD1_52_G09_A029 3', mRNA sequence TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): CGATTCGGTATCCGCCGATTCGCTACCATGTGTCCTCGAAGCAGAAACAGGAGGTCGGCACTATCAGAAATAAAATCGTGGACGCACGAACCGTGGAAGGCGAAATACGCGTTCAACGTATTGGACAAAGATGGGGACGGGAAAATCAGTCTCTCGGATCTCCAAGACTTCTTCAGCGTGGGGAAGGGACTGAGCACAGAGGAAATGGAGGGTATGATAGCTGTTGCCGACGCCGACAACAGCGGCTCGGTGGACTTCGAGGAGTTTCGCCGGATTCTGCAGCTGAATATGCCGGAAATTCAAGAAATTAAAGAAACCATGCCGGAAATTCAAGAAATTACAGAAACCAGATCGAGTTCCAATGATGCTCAGATGTGGGCGTTCAAGGAGGCATTTAATGTGCTGGACACGGACAGAGATGGAATTGTGAGCACAGAGGATCTAAAGACCTTCTTCTCTTCCTGCACCGGCATCAGCAGTGGAAGCTGCACTGCAATGATGAGCGAGAAAGATTTGGCGGACATGATAGAGGCGGCAGGCGGTTCCGTCAAATGTGGCGTCCGCTACGAAGATTTTGCCCGGCTGATGATGACGATGACTAATGGCTTCTCTTAATCGGCCTTTGGCTGTTTCTGCATTCAGAGATTCGAATGCTTTAATTTTGGTCTGTAACAGCTTGGACGGTTACTTAAATATTCCCTAAAGAAATATCTAAACTGTTTTTAATGATCTTTGTTTATGCG | |||||||||
gi|58028731|gb|CX715472.1|CX715472 RTPQ1_34_H12.b1_A032 Roots treated with paraquat Pinus taeda cDNA clone RTPQ1_34_H12_A032 3', TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): AAACATTCAACATCATGTAAATAGATCCCAATGGCTGTTCCAATAGCCTTCGTCATCATTCAAGTTGTAAATATCATCATCAGTGCTTTGGCAGATGTTTCTAAAAACATTTTAACGTGCAGATAAAGAACAAGTGCGAGAAATGTCTCTTTTGACATTCTCTTATGTCACACATAAGGAAGTACAATCACATAGCTTCTCCTACGAACTAGCAGAATTTGGCAACAAGTACAACGATGAATAGCTAACCAGTGCTGCTAGAAATATAGATACGGTGGATGTTGTTGATTGCAAGTTTTTTCCTGCAAGTTGGGCATCTCTTCCATCGATGTATAGCATTTGTAATGCATTTTTTACAGAAGATGTGCCCACATATAGTTGATGTCTCCTCCTCCATCGTGGATATACAAATTGCACATGTGAGCTTAACTTCCTTTGATTCATCAGATTGAACATCACTGCTTAATTGCTGTCCAGTCCTCCTCTTCTTGGAAGAACTTTGATCAGCTTCTCCAGCATCATCACAAAGAACAATTGGCTTATTTGGAGGAACTCTACCATGCCTGCGACGGGGATTGTGCTCTGCTGATGTCCTTCCTGTAACTGCCAGTCCAAGTCGAAGCTCCAAGTCTTCTTCATTTACTATTGGTATGCGACTACTTCGTTG | |||||||||
gi|48930619|gb|CO160078.1|CO160078 FLD1_18_F02.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_18_F02_A029 3', mRNA sequence TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): CTTCGTGCCGAATTCGGCACCAGGCCTCGTGCCGAATTCGGCACGAGGTTTTTGTTCAAGTTGATGAATTTTAAAACATTCAACATCATGTAAATAGATCCCAATGGCTGTTCCAATAGCCTTCGTCATCATTCAAGTTGTAAATATCATCGTCAGTGCTTTGGCAGATGTTTCTAAAAACATTTTAACGTGCAGATAAAGAACAAGTGCGAGAAATGTCTCTTTTGACATTCTCTTATGTCACACATAAGGAAGTACAATCACATAGCTTCTCCTACGAACTAGCAGAATTTGGCAACAAGTACAACGATGAATAGCTAACCAGTGCTGCTAGAAATATAGATACGGTGGATGTTGTTGATTGCAAGTTTTTTCCTGCAAGTTGGGCATCTCTTCCATCGATGTATAGCATTTGTAATGCATTTTTTACAGAAGATGTGCCCACATATAGTTGATGTCTCCTCCTCCATCGTGGATATACAAATTGCACATGTGAGCTTAACTTCCTTTGATTCATCAGATTGAACATCACTGCTTAATTGCTGTCCAGTCCTCCTCTTCTTGGAAGAACTTTGATCAGCTTCTCCAGCATCATCACAAAGAACAATTGGCTTATTTGGAGGAACTCTACCATGCCTGCGACGGGGATTGTGCTCTGCTGATGTCCTTCCTGTAACTGCCAGTCCAAGTCGAAGCTCCAAGTCTTCTTCAGTTACTATTGGTATGCGACTACAT | |||||||||
gi|48936177|gb|CO165636.1|CO165636 FLD1_56_A04.b1_A029 Root flooded Pinus taeda cDNA clone FLD1_56_A04_A029 3', mRNA sequence TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): CATCATGTAAAAAAAAATTAACTCAAACCATAAATAAATATGACAATGTTCCTGCAAACTTAGAAACCGAAATGTAAAATAATGAAAGAAAAGCTTGTAGGTGGTAGGGTTTGTTCAAGTTGATGAATTTTAAAACATTCAACATCATGTAAATAGATCCCAATGGCTGTTCCAATAGCCTTCGTCATCATTCAAGTTGTAAATATCATCATCAGTGCTTTGGCAGATGTTTCTAAAAACATTTTAACGTGCAGATAAAGAACAAGTGCGAGAAATGTCTCTTTTGACATTCTCTTATGTCACACATAAGGAAGTACAATCACATAGCTTCTCCTACGAACTAGCAGAATTTGGCAACAAGTACAACGATGAATAGCTAACCAGTGCTGCTAGAAATATAGATACGGTGGATGTTGTTGATTGCAAGTTTTTTCCTGCAAGTTGGGCATCTCTTCCATCGATGTATAGCATTTGTAATGCATTTTTTACAGAAGATGTGCCCACATATAGTTGATGTCTCCTCCTCCATCGTGGATATACAAATTGCACATGTGAGCTTAACTTCCTTTGATTCATCAGATTGAACATCACTGCTTAATTGCTGTCCAGTCCTCCTCTTCTTGGAAGAACTTTGATCAGCTTCTCCAGCATCATCACAAAGAACAATTGGCTTATTTGGAGGAACTCTACCATGCCTGCGACGGGGATTGTGCTCTGCTGATGTCCTTCCTGCCAGTCCAAGTCGAAGCTCCAAGTCTTCTTCATTTACTATTGGTATGCGACTACTTCGTTGAGACACTGAACTCCTTGCTAGAGCAAATGACCTTGGAGATGACACCACTACATCATCATCATCCTCAACTAC | |||||||||
gi|66980580|gb|DR057013.1|DR057013 RTNIT1_2_B01.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone RTNIT1_2_B01_A029 3', mRNA s TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): AAAGCTTGTAGGTGGTAGGGTTTGTTCAAGTTGATGAATTTTAAAACATTCAACATCATGTAAATAGATCCCAATGGCTGTTCCAATAGCCTTCGTCATCATTCAAGTTGTAAATATCATCATCAGTGCTTTGGCAGATGTTTCTAAAAACATTTTAACGTGCAGATAAAGAACAAGTGCGAGAAATGTCTCTTTTGACATTCTCTTATGTCACACATAAGGAAGTACAATCACATAGCTTCTCCTACGAACTAGCAGAATTTGGCAACAAGTACAACGATGAATAGCTAACCAGTGCTGCTAGAAATATAGATACGGTGGATGTTGTTGATTGCAAGTTTTTTCCTGCAAGTTGGGCATCTCTTCCATCGATGTATAGCATTTGTAATGCATTTTTTACAGAAGATGTGCCCACATATAGTTGATGTCTCCTCCTCCATCGTGGATATACAAATTGCACATGTGAGCTTAACTTCCTTTGATTCATCAGATTGAACATCACTGCTTAATTGCTGTCCAGTCCTCCTCTTCTTGGAAGAACTTTGATCAGCTTCTCCAGCATCATCACAAAGAACAATTGGCTTATTTGGAGGAACTCTACCATGCCTGCGACGGGGATTGTGCTCTGCTGATGTCCTTCCTGTAACTGCCAGTCCAAGTCGAAGCTCCNAGTCTTCTTCATTTACTATTGGTATGCGACTACNTCGTTGAGACACTGAACTCCTTGCTAGAGCAAATGACCTTGGAGATGACACCACTACATCATCATCATCCTCAACTA | |||||||||
gi|67956472|gb|DR160945.1|DR160945 RTFE1_9_A01.b1_A029 Roots minus iron Pinus taeda cDNA clone RTFE1_9_A01_A029 3', mRNA sequenc TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): GAATTTTAAAACATTCAACATCACTGTAAATAGAATCCCAATGGGCTGTTCCAATAGACCTTCGTCATCATTCAAGTTGTAAATATCATCATCAGTGGGTTTGGCAGATGTTTCTAAAAACATTTTAACGTGCAGATAAAGAACAAGTGCGAGAAATGTCTCTTTTGACATTCTCTTATGTCACACATAAGGAAGTACAATCACATAGCTTCTCCTACGAACTAGCAGAATTTGGCAACAAGTACAACGATGAATAGCTAACCAGTGCTGCTAGAAATATAGATACGGTGGATGTTGTTGATTGCAAGTTTTTTCCTGCAAGTTGGGCATCTCTTCCATCGATGTATAGCATTTGTAATGCATTTTTTACAGAAGATGTGCCCACATATAGTTGATGTCTCCTCCTCCATCGTGGATATACAAATTGCACATGTGAGCTTAACTTCCTTTGATTCATCAGATTGAACATCACTGCTTAATTGCTGTCCAGTCCTCCTCTTCTTGGAAGAACTTTGATCAGCTTCTCCAGCATCATCACAAAGAACAATTGGCTTATTTGGAGGAACTCTACCATGCCTGCGACGGGGATTGTGCTCTGCTGATGTCCTTCCTGTAACTGCCAGTCCAAGTCGAAGCTCCAAGTCTTCTTCATTTACTATTG | |||||||||
gi|68254938|gb|DR387340.1|DR387340 RTHG1_21_D02.b1_A029 Roots plus added mercury Pinus taeda cDNA clone RTHG1_21_D02_A029 3', mR TGAAGAAGACTTGGAGCTTCGA EST sequence (targeted fragment marked with yellow): GGCTGGTCCAATAGCCTTCGTCATCATTCAAGTTGTAAATATCATCATCAGTGCTTTGGCAGATGTTTCTAAAAACATTTTAACGTGCAGATAAAGAACAAGTGCGAGAAATGTCTCTTTTGACATTCTCTTATGTCACACATAAGGAAGTACAATCACATAGCTTCTCCTACGAACTAGCAGAATTTGGCAACAAGTACAACGATGAATAGCTAACCAGTGCTGCTAGAAATATAGATACGGTGGATGTTGTTGATTGCAAGTTTTTTCCTGCAAGTTGGGCATCTCTTCCATCGATGTATAGCATTTGTAATGCATTTTTTACAGAAGATGTGCCCACATATAGTTGATGTCTCCTCCTCCATCGTGGATATACAAATTGCACATGTGAGCTTAACTTCCTTTGATTCATCAGATTGAACATCACTGCTTAATTGCTGTCCAGTCCTCCTCTTCTTGGAAGAACTTTGATCAGCTTCTCCAGCATCATCACAAAGAACAATTGGCTTATTTGGAGGAACTCTACCATGCCTGCGACGGGGATTGTGCTCTGCTGATGTCCTTCCTGTAACTGCCAGTCCAAGTCGAAGCTCCAAGTCTTCTTCATTTACTATTGGTATGCGACTACTTCGTTGAGACACTGAACTCCTTGCTAGAGCAAATGACCTTGGAGATGACACCACTACATCATCATCATCCTCAACTACTATTGGGGCATTCGTGCCCCTGCTC | |||||||||