| mature miRNA: TGAAGACTTCGAAGCTGGCTG species: Raphanus sativus database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|161566292|gb|EY937836.1|EY937836 RS2DC78TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence TGAAGACTTCGAAGCTGGCTG EST sequence (targeted fragment marked with yellow): GGGAGATTGAGAAGATCGAAAAGAAGAAGAAGGAAGAAGATCGAAAACGATGCCTCTGAGTGCGACGATGGTGGGAGCTTTGCTGGGACTCGGTACCCAGATGTACTCCAACGCTCTCCGCAAGCTTCCTTACATGCGCCATCCGTGGGAGCATGTGGTGGGTATGGGACTCGGTGCTGTGTTCGCGAACCAGCTCGTGAAATGGGATGTGAAGCTCAAGGAAGATCTCGAAGTTATGCTCAATAAGGCTAGAGCTGCCAACGAGCGCCGTTACTTTGATGAAGATCGTGATTAGTTATGGAGTCATCTTCGACGTCTTCAGAAAAGAAATATATTTTCTCTGAAGTCATCTCAAGTGCTTGTTTTCTTTGATCTTCCATGTAAAAGCTTTTCTATTTTTTCTTAGAGCTGGATCTCCTTTTGCTTCGGTATTGGAGCTCTTTCCGTTCAGTGTTTTTGGTTAATGAACCTAAAGATGATTTGTGTTTTCATCTCACAGTCTGAATCTGTTTGTACCTGGCTCTAATAATTTCGAATTATAAACCTTTCAATGCTCAAAAAAAAAAAAAAAAAAAA | |||||||||
gi|161574146|gb|EY946016.1|EY946016 RS3CZ18TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TGAAGACTTCGAAGCTGGCTG EST sequence (targeted fragment marked with yellow): TTTTTGCTCTGTCTTTTTTCGTTTTCAATTTTAAACGAGTTTAGGGTTGGTTCCTTTGGTGGCTCGTGATTCTACTGAGTCCTTCCTTATCTCTTTTGGATCTGTCGTTGAATTTTCCGTAGCCGTTGATCTGATGGTTTGAATTTGCAGCTGTGGCTGTGGTTGTTGTTTACAGTTCAGACAGTGTTCCATTTTCAGATCTGGTTTCTCTTTAGTTCATGAGTCTGGTTTGTTATTATTTCAACCTCTCCCATCTTCGTCCGGTAGAAATGTTGTAAGGTTTTGAAGAAATCTCTTTCGTTTCGGGTTCTTGGTGTGACGGTAGCGGTTTTGGTTTGCAACGGGGTGGTTCAAATGGTCTTTATGTGAAGATTTATGGTGCTAATAGGTTCCGTTTCGGATGGAGCGGATGTAGGTTCTGCGTTCTGCTGAGCCATCTTCGAGGTCTTCACCAACTTGTTTCATGCATCAGCGGATAGAAGATCTTCAGGCCTGCCTCAGAGTTTTTGGTCTGGTTCTATCTTTCAAGTTGGAGATTGTTTAGTTCTTCCTTGCAGTTGCAATCATCGGTTACGGGTTCACGTTTCTCAAGGCTCGTCGAAAGTTTGAGTATTCTCTTATGTATCTCTGTGTATTTAGGCTTTAGTTCAAATTAGTTCTCGTGATGTTTGGGTTTCGGAAGAGTATGTTCCTATCCGACTTATGGCTCCGATGGATTTAGATCCTTGTCGCTCTTGGCTCTGGAAAGACTGATGTCTTTGCCGCGGATTGTACTTACAGTTCATGTTATATATATCTACTAGATGACA | |||||||||
gi|156177481|gb|EW737627.1|EW737627 RS3AR11JQ RS3(RT) Raphanus sativus cDNA 3', mRNA sequence TGAAGACTTCGAAGCTGGCTG EST sequence (targeted fragment marked with yellow): GGAACAAGAGTTTGAGAAGATCGAAAAGAAGAAGAAGGAAGAAGATCGAAACGATGCCTCTGAGTGCGACGATGGTGGGAGCTCTACTGGGACTCGGCACCCAGATGTACTCCAACGCTCTCCGCAAGCTTCCTTACATGCGCCATCCGTGGGAGCATGTGGTGGGTATGGGACTCGGTGCTGTGTTCGCGAACCAGCTCGTGAAATGGGATGTGAAGCTCAAGGAAGATCTCGAAGTTATGCTCGATAAGGCTAGAGCTGCCAACGAGCGCCGTTACTTTTATGAAGATCGGGATTAGTTATGAAGTCATCTTCGACGTCTTCAGAAAAATAAATATATTTTCTCTGAAGCCATCTCAAGTGCTTGTTTTCTTTGATCTTCCATGTAAAAGCTTTTCTATTTTTTCTTAGAGCTGGTTCTCCTTTTGCTTCGGTATTGGAGTTCTTTCAGTTCAGTGTTTTTGGTTGATGAACCTAAAGATGATTTGTGTTTTCATCTCACAGTCTGAATCTGTTTGTACCTGGCTCTAATAATTTCGAATGACAAACC | |||||||||
gi|167451172|gb|FD954817.1|FD954817 RS3G178TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence TGAAGACTTCGAAGCTGGCTG EST sequence (targeted fragment marked with yellow): GGGAGAAGATCGAAAAGAAGAAGAAGGAAGAAGATCGAAACGATGCCTCTGAGTGCGGCGATGGTGGGAGCTCTACTGGGACTCGGCACCCAGATGTACTCCAACGCTCTCCGCAAGCTTCCTTACATGCGCCATCCGTGGGAGCATGTGGTGGGTATGGGACTCGGTGCTGTGTTCGCGAACCAGCTCGTGAAATGGGATGTGAAGCTCAAGGAAGATCTCGAAGTTATGCTCGATAAGGCTAGAGCTGCCAACGAGCGCCGTTACTTTGATGAAGATCGGGATTAGTTATGAAGTCATCTTCGACGTCTTCAGAAAAATAAATATATTTTCTCTGAAGCCATCTCAAGTGCTTGTTTTCTTTGATCTTCCATGTAAAAGCTTTTCTATTTTTTCTTAGAGCTGGTTCTCCCTTTGCTTCGGTATTGGAGTTCTTTCAGTTCAGTGTTTTTGGTTGATGAACCTAAAGATGATTTGTGTTTTCATCTCACAGTCTGAATCTGTTTGTACCTGGCTCTAATAATTTCGAATGACAAACCTTTCAATGCTTAATACTGTTAAAAAAAAAAAAAAAA | |||||||||