| mature miRNA: TGAAGCAGCCACATGATCTGT species: Glycine max database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|208318061|gb|GE116744.1|GE116744 454GmaGlobSeed859392 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): GAATTAGGAGCTGGGAATCCACAAGCAGTTCGTGTGGCTGTTTCAGCAACGATGTTCCTTGCAGTCACAGAGGGTCTAATTGTAAGTGCAACACTATTCGGCTGCAGACATATCTTGGGTTATGCCTATAGTGATGATCGTATGGTTGTTCATTACGTGGCTGTTATGACCCCTCTGCTTTGTCTCTCTATTTTTACTGACAGCTTACAAGGAGTTCTTTCAGGGGTTGCTAGAGGAAGTGGGTGGT | |||||||||
gi|192309475|gb|FK000179.1|FK000179 GLPAF13TF JCVI-SOY1 Glycine max cDNA 5', mRNA sequence TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): GGCAAGAGAAACTACACTTACACACAAGCTGTTAGATCCAACCTTGGTGGTCTTGCGGTCATGTTTTGTGGGTGGGTTCAGTATGCAAACCTATTCGGAGTGGCAATTGGGTACACCATAGCAGCTTCCATAAGCATGATGGCAGTCAAAAGGTCTAATTGTTATCATAGTAGCGGAGGGAAAAATCCATGCAAAATGAATAGCAATTGGTACATGATTTCATATGGTGTTGCGGAAATTATCTTCTCCCAAATTCCAGATTTCCATGAGTTGTGGTGGCTCTCTATTGTAGCTGCTGTCATGTCCTTCACATACTCATTCATTGGACTTGGCCTTGGTATTGGTAAAGTTATAGGAAACGGAAGAATTAAAGGAAGCCTAACTGGTGTAACTGTTGGGACAGTGACAGAATCCCAGAAAATTTGGAGGAGTTTCCAAGCTCTTGGTAACATAGCCTTTGCCTACTCCTACTCAATGATCCTTATTGAAATTCAGGACACAATCAAATCTCCTCCAGCAGAGTCACAGACAATGTCCAAGGCTACTTTAATCAGTGTTTTGATCACAACCGTTTTCTATATGTTATGTGGCTGCTTTGGCTATGCTTCTTTCGGAGATGCAAGCCCGGGAAACCTTCTCACTGGCTTCGGCTTCTATAACCCATATTGGCTCATTGACATAGCCAATGTTGGCATAGTTATCCACCTTGTTGGTGCATACCAAGTTTACTGCCAAC | |||||||||
gi|207774587|gb|GD747587.1|GD747587 454GmaGlobSeed490236 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): CGGTCCGAGGAAATAAAAGTTTCTTGGCACTTTGCTTGTTATCATAGGTTATGCCTAAGTTTCCATGGTATCTCTCGAGGCTTGTTTATTATATTAATCATGTGGCTCCTTCAAGGTTCATAACAAGTTCTTGTAAAACGATCTGTTGAAAATTTCCCTTGAACCATGCATGCAAGCTATGGTTTTAC | |||||||||
gi|120533033|gb|EH261166.1|EH261166 JGI_ACBU4319.fwd ACBU Phakopsora pachyrhizi infected soybean leaf tissue 6-8 days post inocu TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): GAATCTGGCTCTGTGCCTGTTAAAAATCAAGTGGTTGCTTCAAATTTGAATTCAGCATCCCCACCATTTTACCCCTCAGGCTCTTCCAACAAAGATATTAATTTGGCACAAAAAAGGGAGGTGCAAACAGGTGGCAGTAGCAGGAACATTAGTCCTGTTGTTGTGGATGAGGGTTTCCCAGTTCAACAAAACAATGCACGGCTTCGGGGAAACAACGTTGTTGATTCCATTAGCATGGCAAAGTTGTATATTGATGAATCCATCCCTCTATCTGTTGGAAAGCCTGGATCTTCTGCAGTCAGTGCATCTCAATCTCCTCATCTCAGGGCTTCTGGGACTGGGAGGGGTGCATCAATCCCAATACAGATGAATTATCAGCATGCTCCCTCGCAGAATAAAGTTTCTCCATCTCAATTCCAGGTTATTCAGACAAGTTCTGCACCAGGGAGGAATTCAACTTCTGTGCAAGCTACTGCCCCACAGTTGGGGAATAGGCCTGATAGTGGGTCTCAATCTTCATCTCCCCTCGAAACATCCATGCCAATAAGTTCACATGATTCTTGGGGAAGTGGATGCAGCATCAGAATCAGGTAAAGTCAAAGGTGCTATGGTTGGGAAGGGAAGGGAAGGTTCCCAAGGTGCAAGAAGGGGCTCTTTCATTTA | |||||||||
gi|58021892|gb|CX708633.1|CX708633 gmrtDrNS01_38-C_M13R_D09_073.s3 Water stressed 48h segment 1 gmrtDrNS01 Glycine max cDNA 3', TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): AGGGGGATGATGACCAATTCCTACAATTGCTGTTGCCAATCTGTCTCCAACTCCTGCAACTGGAGAGGAATCATCACAGCTGACTTTAGTTCCGCCTATTCAAGCAGAACAGGTGTCTGCTTCAGGATCTGGATCTACTGCTCTTGCTACAGATCATCAGGGATCATCTTACAACAATAGGAGATCTCCTAATCAGTCATCTCCAAGTAGTCAAGACAGAGCAGGGCCATCAGAATTACAATCATTTTCAGAATCTCTGAAATCTAAACTGAATGCTGTATCAACAAGATACAAGGAGTCAATTTCCAAGAGTACAAGAGGGTGGAAGGAGAGATGGTTCTCTCGGAACAACACTATGTCTGACCTTGGATCTGAAGTTAGGCGAGAAGTTAATGCAGGGATTGCAACTGTGTCACGCATGATGGAACGCCTGGAGACCAGCGACAATAATAGAAGCAATAGCAATTCTGCCCCCAGTAATATAGAGGATGGTTCAGTTCAGGAATATAATGGTCAAACTTTAACACCAGGCAATGAAGGGGACGGTCTTTTGAGAGACAATAACACAAAAGCTTCTTGTGCTGCAGGCTCTAGTTCGAACTAGGCATGTAGAAGGAATTGCTTGAACTCTGAATTTGTTTTGTCCAAAAGGTAGAAATAGAATTGCCCATTGGGGATGTGAAATTCCATGGATGTGATGCATTGCCTATTGGCTGGCGCAGACCAGGCAAGTGATAATCCATTGGCCTGCAGAAGAAGACCAACAATTGTGATATTGGAAATAAAAAAACTTAAAAAAGGCAGCAGTGGTCTCTTTCGTTTGAAACTTAGGAACCTATATATGATTGTATATTCACATTGTAAACTTATTTATAGATATTCCTCAGATAATCTTTACATG | |||||||||
gi|120530942|gb|EH259075.1|EH259075 JGI_ACBU559.fwd ACBU Phakopsora pachyrhizi infected soybean leaf tissue 6-8 days post inocul TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): AATTCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCTTTCTGTGATAGTGATCCCTCCACGGTGACAAGTTGCAAGCATGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAAAGAAGCTCCCAGTGCCCCATGTGTTGGCAACCTATCAGTCTCAAAGATCCAACAAGCCAAGAATTACTTGAGGCAGTGGAAAGAGAGCGGAACTTTAGGTTCAATCCATCTAGAAATGCCACCATATTTCATCATCCAACACTGGGGGATTTTGAGTTACAACATTTGCCAGTTGGAGCTAGTGATGCTGATCTTGAAGAGCGCATTATCCAACACTTAGCTGCTGCAGCAGCGATGGGAAGAGCACGGCACGTTGCTAGAAGAGAAGGCCAGAGAAACAGATCATCAGCTCAAGGTCGCCAACATTTTTTGGTTTTTTCAACTCATCCTAATTCACCACCCATGGCTCCTGCTTCTTCCTCTCCATCTCAGAGGGGGGATGATGAACCAACTCCTACAATTGATGTTGCCAATCTGTCTCCAACTCCTGCAACTGGAGAAGAATCATCGCAGCCGACTTTAGTTTCGCCTGTTCAAGCAGAACAGGTGTCTGCTTCAGGATCTGGAACTACTGCTCTTGCTACAGATCATCAGGGATCATCCTACAACAATAGGAGATCTCCTAATCAGTCATCTCCA | |||||||||
gi|192321382|gb|FK012815.1|FK012815 GLQAN34TR JCVI-SOY2 Glycine max cDNA 5', mRNA sequence TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): GGCTTTGATTCAACGTTATTTTCTCACAAATTATATGGTTGTTTCAGATCCATAAAAGTTTTGGCAAAGATAGAAAGCTCAGAATCTCTTCATAAACTGGAGGAAATAGTGCGAGCTTCTGATGGGATCATGGTGGCTCGGGGTGACCTTGGGGTCGAAATACCACTTGAACAGATTCCTACGGTCCAAGAGGATATAATTTATGTATGCAGACAATTAAACAAGCCAGTGATTGTAGCTTCTCAGCTTCTTGAGTCAATGGTCGAGTATCCAACACCAACACGTGCTGAGGTAGCAGATGTTTCTGAAGCAGTTAGACAGTATGCTGATGCTTTGATGTTGTCTGGAGAGTCAGCTATTGGATCATATGCACAAAAAGCTTTGGCAGTCTTGGATATGGCTAGCAGTAGAATGGAATCATGGAGTCGGGAGGAAAACAGACAAAGTCTTGTTAACTACCATCAACTTGGAGCATCATTGCCAGAATGCATAACTGAGCAAATATGCAATTGTGCTGTTGAAATGGCCAACAACCTTGGTGTGGATGCCATCTTTGTGTACACAAAGTATGGACACATGGCATCACTTCTATCACGCAACCGCCCAAATCCTCCCATCTTTGCTTTCACTAACGATGACAGTACCCGCATGGCTCTGACTTTGCAATGGGGTGTTGTACCCCTTCTGGTTGATTTGTCCGATGATGCTGAATCCAACATCTCAAAGTCTGTCCAACTTATGAATCT | |||||||||
gi|193403838|gb|FK366088.1|FK366088 454GmaGlobSeed100720 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): TGCCTTTGACATTTGATCACAACGGGGTCCTTGATTTCGATGAGTTTTACCAAATGATGGCCTAATCAATATTGGTCCCTTATTTCATATGTAGTATATGCATGTTTCTTGTGTATACGGTTCATATGGATGCTTCAATACTTGAAGTTTTATGTAAATATTTACATGGAGGCCACTGGAGCCAGTGCTTATTGTATTCTCAAATAAGAACGGTTTAATTG | |||||||||
gi|192332548|gb|FK025653.1|FK025653 GLRAP08TF JCVI-SOY3 Glycine max cDNA 5', mRNA sequence TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): GATGGAAAGTTCTTGGTTTAAAAAGGGGTTGGAGAAGCCTGCTATTACTGTGACCGAAAACGAAGAGCTAGCTCCCCTTGATGCTGATGGAATATTTGAAGCATGCGAAAATGATGGTCCTATTGCCGAGCCTAAGCAAGAACAGGCCAAGCCTTGTAACTTAAATGCTTTTGATATTATCTCCTTCTCAACTGGTTTTGATTTATCTGGTTTGTTCGAGGACACTTTTCTCAAGAAAGAGACACGGTTTATGTCAAAAAAGCCTGCCTCAATCATAGTCTTGAAGTTGGAAGAAATTTGTAAGCGGCTTTGCTTGAAAGTAAAGAAGAAAGATGGAGGCTTGCTCAAATTGGAAGGTTCCAAGGAAGGCAGGAAAGGAACTTTGGGTGTTGATGCTGAGATTTTTGAGATTACCCCACACTTCCATATGGTGGAACTTAGAAAGTCCAATGGTGGCACCATGGAGTACCAGAAGCTTTTTAAACAGGATATAAGACCAGCGCTTAAGGACATTGTTTGGACCTGGCAAGGAGAAAAACCACAGCAAGAGCAAGAGCAACATGAAGTAGTCCAGGAAGAGCACCAACCTTCTCATACTGCTTAGTTTCATGATCAATATTTCACCCCTTGGTTTTTGTATGCACTGTGCTTCTTTTGTCATTATCTTAGTCAAGTGCTTAATTTTAATAGACTCATAGATAACGTGGCTGGTTCAGCCTCCTCTTGTCTGATGGATACTTGAACAATTGTGTACTAAATTGCAATTCCCAA | |||||||||
gi|207836117|gb|GD806086.1|GD806086 454GmaGlobSeed548735 Soybean Seeds Containing Globular-Stage Embryos Glycine max cDNA, mRNA TGAAGCAGCCACATGATCTGT EST sequence (targeted fragment marked with yellow): GCATATCATTGGCTGCTTCAGCTTCATATAGTGTACATTTTCATATTTAGTTGCTATTTTTTCAACCAAATTATTTATTTCACTTAGTACACATTACAACTGCTCATATATAGACCACACGCTCTAATTTGATTTTC | |||||||||