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mature miRNA: TGAAGCTGCCAGCACGATCTA
species: Raphanus sativus
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|167452248|gb|FD954888.1|FD954888 RS3G260TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence 

TGAAGCTGCCAGCACGATCTA
||||.||||||. |||| |.|
ACTTTGACGGTTCTGCTCGGT

EST sequence (targeted fragment marked with yellow):
GGAAAGAAAAAAAAAAGCTCTCCTTTTCTCTCTCTCTCTTTCGACCTTATAATCGCAGAATCACTCTTCTGTTTGTTGACCTAGATCTTGAGGATCAAAGTTGAATTTTTGAGATCTGGGTTTTGGACAAAGACTCTGTCTTTCTTCATTCATTCTACCGTTTTTGTTTCAGCTCAGCTCAGCTCGAAATTTTATTTAAGGGAGGCGTGATTCGGTTTCCAAATGGTTGAGGCGCAGCAGAAGAGTTATCAAGTGCCACGTCACCACACATCTCTCAAGAAGCCCTTATGGCTCGTCTTGGCAGTTTCAGTGCTCAGCATGCTTCTCATCTGTACTCACATGATGTCTCCACGACACAGCAAGAGCTCCTCCTCCTCGTGGCTACCTGTTCACGTCAGTAAACTCACTGACGAAGAGGTAGCAGCACGAGCAGTGGCCAGAGACATATTCAAAACGCCTCCTCCCTTCGTCACCGAAAACTCTAAAATCGCTTTCTTGTTCTTGACTCCTGGTACTTTGCCGTTTGAGAAGCTCTGGGATGACTTCTTCACGGGTCATGAAGGGAAGCTCTCTATCTACATCCACCCCTCCAAGGAAAGGCCAGTTCATATCAGTAGTCACTTTTCTGATCGAGAGATCCATAGTGATGAGGTCACTTGGGGTAGGATCTCTATGGTTGATGCTGAGAAGAGCTACTGGTTAGTGCTCTTGAAGATCCTGATAACCACA


gi|166147706|gb|FD578550.1|FD578550 RS3F282TF RS3(RT) Raphanus sativus cDNA 5', mRNA sequence 

TGAAGCTGCCAGCACGATCTA
|.|||||.|||.||| || ||
ATTTCGATGGTTGTGATATAT

EST sequence (targeted fragment marked with yellow):
GGAAAGAGAAGGACGTTCGTTCCTCATTTGGAGCTACAGTGACCGTTTCTAGTGGCTAGTGCTTATAGAGAGAGTACGAGAAAGACAGATAATCTCGCGAAAGCACACTCTCCTGTGCGATCATCAGATTCTCCCTCGAGGGCTTATCTCAATCGCTCTCCTGCCCCTTTGTTCGTATCCTTCCCCGCTTCTTCCGTGGCTCCTTTTTATGGTGTGACTGAGATGAGTTCGATGCGTATATAGTGTTGGTAGCTTTAAAGAGAATTTTTTTTGCAAAGCTATGTCAGAGTCTCGCCAAAGGCCTCCTTTTAAGGGCCCGAGATGGATCATCACTTTGGTTGCTCTCGTTACGCTCGTTGTCATCACTGCACTCATATATCCTCCGCGTAACTCTGTCACTTGCTACATGTTTTCTGGTCCTGGATGTCAGTTGTACCAACAGTTCCTGTTCGTGCCTCCAAGGGAACTCACTGATACCGAAGCTGCAGCTCAGGTTGTGACCAACGAGATCATGAATCTACCTGAGTCTAAGACAGCCAATCCGAAGATTGCATTCATGTTCTTGACACCGGGGGCTTTGCCTTTTGAGCCTCTCTGGGAGATGTTCCTCCGTGTCATGAGAACAAGTTTTCGATTTATGTGCACGCGTCAAAGAAAAGTTCTGCGCACACTAGCAACTACTTTGTTGGTCGAGATATTCACAGTCACAAGTTGCTTGGGGTCAGATATCGATGGTTGATGCTGAAAGACGCTATAGCTCATGCTCTCATTGATCTGATACCAACACTTTGTGTGCTTTCAGATAGTGTGTGCCGCTATTCGAC


gi|156166100|gb|EW726246.1|EW726246 RS2BB27TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence 

TGAAGCTGCCAGCACGATCTA
|| |||||||| |||.||||
ACATCGACGGTAGTGTTAGAC

EST sequence (targeted fragment marked with yellow):
GATGGCGACAACGACCAATTGATCCCTACGAAACAATAGTCATGCAGAGAGAATACTACGGCAACAAAACGACCACGTACACGCAGGTACTGGTGGTGTCATCGATCAGTTTGGTGCTAGCAGCCGCAGTGCATTACCGTCTCCGGAGGCTACGTGACACCAAAATCATCCCTCGTCTAAGGTCATCTCACAAACACAAAGACCATGAGAAACTCGAGAGGTTCTCTCATTACGTGGCGAGGCAGATGGGGTTCAAAGACAGAAGAGACTGTCCGAATCTCTGCAAGTTGGCAGCAGAGTACATCAGCAAATCAGAATGTTGTGAAGAAGACATTTCCAGCTTTTTTCTCAAGAGCCTGACGCTGATACTCTCTTCATCAAGCTCGTTGAGGGGTTTGAAAGATGCATCCTCAGCTACTTTGCGTTTCATTGGAGCCACGCTGATCTCATGATTAGTCAGATTCTACATGCGGATACTGAACCCAAGAGGAAGCTGAAGCAGATTGTGATGGCAGCTACAAGGGTACAGAGCCTTAAGCTCTCGTGGACATGTAGATATGATCCAGACAGCTGAGCTGGTTCACCAGTCATCAACGGATGCAGCTTCATCGCTGCTAGTGACGGCTTTGACGAAGGGAGGGACGTGATAATGGATGGGACACTCTCTTGGGTACCATTTGTGGTGCA