| mature miRNA: TGAAGCTGCCAGCATGATCTA species: Gossypium hirsutum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|164365880|gb|ES803568.1|ES803568 UFL_592_10 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGAAGCTGCCAGCATGA-TCTA EST sequence (targeted fragment marked with yellow): GGCACGAGGCAAATCAAGTGCTAAGTCTCGCCAATCTGAACCCCACGAGTAAAATGGTAAAGATGTCTCCACCATCTAAGGATGAAGATGAGAGTGGGGAAGAAGATGAGGAAGATGATGAACAGGGTGCCACTTGTGGTGCATGTGGGGATAGCTACGGCACTGATGAATTCTGGATTTGCTGTGATATCTGCGAGAGATGGTTCCATGGAAAATGCGTGAAGATTACACCTGCAAAGGCTGAACATATCAAGCAGTATAAGTGCCCAAGTTGCAGTAGCGAGCGGGCTAGGGTTTGAAAGTACGTCCAGAAATCGGACTTACATCCTGTTGAAACGAAGCACGCATGGTTCATAGAATAGTTGTGACGGTTTGGAAGTAAAACAGAGTAGCCCGTTTGAGCTGATGAATGAATGTGGATGACTGCAGATGGGATATGTAAGTTTTGCTACTCTTGCATTTACTCTGTTTAATTTCATTGGGAATTGTGTCTTAGACTCATGCTGGCAGCTACAAATATAATATATATATATA | |||||||||
gi|164367807|gb|ES791215.1|ES791215 UFL_474_31 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GGCACGAGCAACTCTGTACTTCCCCAGGTTGAACAGTTGGGAACTGCACAATCAAATGCATCTGAACCTAACAACTTATTACCTCCATTTCCTGGAAGGGAGTATTCTGCTTACCACAATGCAACTGATCCACAGAACAATCTTCTCTTTGGGGTTAGCATTGATTCCTCGTCTCTTATGCTGCATCATGGGATGACAAACCCGAAAAGCATCAGAAATGACAATGATTCGATGTCCCTTCCGTACGCTGCTTCAAATTTCACAAGTGCTTCTGGCACAGATTTTCCTCTTAATTCAGACATGACTACCTCAAGTTGTGTCGATGAATCAGGTTACTTGCAGTCCTCTGAAAATGTGGACCAAGTAAACCCTCCAACTGGAACCTTTGTCAACGTTCACAAGTCGGGGTCCTTTGGGCGCTCATTGGATATTTCCAAGTTTGGCAGCTATGATGAGCTGCGCTGTGAGCTTGCTCGACTATTTGGCCTTGAAGGCCAATTACACGACCCTCAGAGATCATGCTGGCAGCTTGTATTTGTTGACAGGAATAACAATATTCTTCTCC | |||||||||
gi|109855367|gb|DW484346.1|DW484346 GH_RMIRS_046_H02_F Cotton Normalized Library random primed Gossypium hirsutum cDNA, mRNA seq TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GACTTGAATTTCAATCCCAATGCGTTAATAGCTATTTGAAGAAGAAACGGTCAAAGTCTTGGCTTGTCACCCTTTCACTCTTTACGGGTATTTCATTAATATATTGAAATTTATTACATTATCGAAAATGTTTGATTAATTTAACTGCTTTCATTCAAGTTTTCTAGGTTCTTTGTTTTGTGCTTGCAGTTCTCTGCCATCCCCCTCCCCCCTCCTCTCAGGGCTTGACGGATTTTACCATAAGCCTGCTTTTTTCGTTTAACCGAGGAAATACGCTTTGTCTATTTTTCTATTTTTACGTTTTTTAGTTGTATTCTGGGTTGTTTCTATTATTCATGTTCGATCCATGAAAATTAATCCTTTTGAGGGTTCATGGTTCCCCTCCCCATCCAATAATGTCGATCTGAAATTGACCAATACTTGATGGTGTCTTTGTTGTGTTTTTCCTATCAAGAAAGGTTCCACCGTANGAGAGTAGAATCGAGATTGGGAATCACTACATGGTTGTGGGGTCATTTGGCTCAAGCCGTCGTTGCCTCTGCCTTTGGGCTTGATTCCGCCCACACTCAGTTTCCTAGCGATGCGATGCGATACCTGTCCTTATTTCTGATCTTGTTTGGATTTGCTTTGTCATAATGGTTCTGGGCATTCTTCATGACTGTGCTTGTGGCGCTCCTCGATCGTTTGATTCGCGTTTTTCATGGATGGTGTTGGCCGCTTCATCTTTGGCTTCAAGAGCTTGGGTTCTAGCTTGGATCCTGTTCGGGTTTGTTTTG | |||||||||
gi|84167238|gb|DR455886.1|DR455886 CM039A01 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GGGATATAGAAGAAGGCTTAAGAGGACAAGCAATGGGCTTCACGCAATTTTTGACAAAATGGTTGATGAACATCAACAATGGACTTACGCCAAGGAACAAAAACCTTACACAGATTTCTTTCATGTACTGGTTTCATTGTTGGATACACCCATGAACCCTAACGATGAAGAGCAGCAGTACATCATTGGTAGAGAAAACATCAAGGCCATAATGGTGGACATGGTGGCAGCTTCATTTGACACCACAACTACAGCCATTGAGTGGACACTTGTAGAGCTTCTAAGGCATCCTTCAGTCATGGTTGCTCTCCAACATGAACTAGAAAGAATTGTTGGAAGGCATAGAATGGTAGAAGAGTCGGATCTACCGAAGCTTGCTTACTTAGATATGGTCATCAAAGAGAGTTTAAGGTTGCATCCAGTGGCGCCCTTACTAATTCCACGTGAGTCGACAGAAGATATCACCATTGATGGATATTTCATTCCAAAGAAGTCGCGAATTTTAGTGAATGTTTGGTCCATCGGGCGAGACCACAAAGTATGGTCAAACAATGCTGAAGAGTTCTTTCCAGAAAGGTTCAAGGATAGCAACATAGAGCTTCGAGGACATGATTCCAACTCTTCCTTTCGGGAGTGGCGTA | |||||||||
gi|109878508|gb|DW507478.1|DW507478 GH_TMIRS_114_G01_F Cotton Normalized Library dT primed Gossypium hirsutum cDNA, mRNA sequenc TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GTTTGATTAATTTAACTGCTTTCATTCAAGTTTTCTAGGTTCTTTGTTTTGTGCTTGCAGTTCTCTGCCATCCCCCTCCCCCCTCCTCTCAGGGCTTGACGGATTTTACCATAAGCCTGCTTTTTTCGTTTAACCGAGGAAATACGCTTTGTCTATTTTTCTATTTTTACGTTTTTTTAGTTGTATTCTGGGTTGTTTCTATTATTCATGTTCGATCCATGAAAATTAATCCTTTTGAGGGTTCATGGTTCCCCTCCCCATCCAATAATGTCGATCTGAAATTGACCAATACTTGATGGTGTCTTTGCTGTGTTTTTCCTATCAAGAAAGGTTCCACCGTAGGAGAGTAGAATCGAGATTGGGAATCACTACATGGTTGTGGGGTCATTTGGCTCAAGCCGTCGTTGCCTCTGCCTTTGGGCTTGATTCCGCCCACACTCAGTTTCCTAGCGATGCGATGCGATACCTGTCCTTATTCCTGATCTTGTTTGGATTTGCTTTGTCATAGTGGTTCTGGGCATTCTTCATGACTGTGCTTGTGGCGCTCCTCGATCGTTTGATTCGCGTTTTTCATGGATGGTGTTGGCCGCTTCATCTTTGGCTCCAAGAGCTTGGGTTCTAGCTTGGATCCTGTTCGGGTTTGTTTTGTCAGGGTGGTTCTGGCCGTTCATCATGACTATGCTTGTGACGCTCCTCGATGACTCGTCCTTGGTTTGATTTGCATGGTTCGTAGATAGTGTTGCTCACTTCAACTCTGTTTCTGAGAGTTCGGGTACCAGATTGTTCAGCCTTTCGAACTCTTTTTCCTAGGAATGAGCCCTATAGTTCT | |||||||||