| mature miRNA: TGAAGCTGCCAGCATGATCTA species: Nicotiana tabacum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|190144941|gb|FG641664.1|FG641664 TT-02_A09 K326 early senescent leaf library Nicotiana tabacum cDNA, mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAGCAATTGATTAATGTAAGTTTTATCTCATTTCGGAACCATCAGAATCCGGTCGAACCTCGTTGAAATCGCTTCAATTGAATCGTCTTTCCTTCCATAGCCGTTAAACTTCTAATAGGTAANNGCGTGTGGGGCTAGCAGCAATGTATGGTTCCGGTTGCTGGGCATCGTCAATAGGGCCTTTTGGAGCTCCATTTATTGTGGGATGCTGTGTCAGTGGTGCTGGAGAGCATCTAATGAAAGGATTTGCTGCTCGGGAATGTTGTATTTCATCATCACTGTCACAAGATTCTGCCTGTAAAAAGGTTTTTGCGAACTGTTCAAGAAAACATCCAATGTGGTGCTTTAAGTAGAGCTGGATTCCTTCTCAAGATTAGTTGCGGGTACTTTGGCTAAGCCGCAAACTGTTGAGATTGCAGCTGTTTACTCTTCCTCATCTTTAGGAATAGGTTATTTTGGCAGCTCCACAGGAAAACTGGAATTGATGAGTTTGCAGC | |||||||||
gi|190751206|gb|FG157624.1|FG157624 AGN_RNC025xi04f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CGGTCCGGATTCCCGGGATCCATGATGAACGTTGACAAGAAAGAATCCGATCGTAACCTTCCAGAACTTTCTCCACCGTCCATGGAGAACCATCCACCGGCACCGGCAGCGACACCGTCACGGAAACCACCAAAAGAACCTACTGCGCCGCCGCAGATGAAACAGTCGCCGTCAACAACTGTCATGATTCCTTCTATTGATCCCAATGCCCTCTTTAGCGGCGGCGGTATTAGCTTTCTGACTGGAAACAAAAGTGCTAAATTCAGCTACGGATATGCTAGTTTTAAGGGGAAACGGGCTTCCATGGAGGACTTTTATGAGACAAGGATATCAGAAGTCGAAGGTCAAATGGTGGCATTCTTTGGTGTTTTTGACGGTCACGGTGGTTCAAGAACAGCAGAATACCTGAAGAACAACCTCTTTAAGAATTTGAGTGGTCATCCTGATTTTATCAAAGATACGAAGTCAGCTATAGTTGAAGCATTTAAGCAGACCGACGCCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCTGGTTCAACAGCATCAACTGCTGTTCTTATAGGTGATAGATTGGTTGTTGCAAATGTGGGAGACTCTAGAGTCGTCGCTTGTAGAGATGGTTCAGCTATTCCTTTATCCATCGATCACAAGCCTGACAGATCTGATGAGCGTGAAAGGATAGAACAGGCTGGCGGTTTCATCATCTGGGCAGTACATGGCGTGTAGTGGGGTACTGGCTGTTTCTCGTGCATTTGGAGATAACTGCTAAAGCCATATGTTGTGGCAGACCAGAGATTCAGAGAGAATGATGGTGTAGATTTTATAATATGCAGTGATGACTTGGATGTCTGTTTAACAGATGCTGTGCATCGTG | |||||||||
gi|190771217|gb|FG154790.1|FG154790 AGN_RNC103xb24r1.ab1 AGN_RNC Nicotiana tabacum cDNA 3', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GCTAATACGCAGTATTTGGGAGGAGGGTCATCACTTTCAGTTACTGATGAGAGTAGGAGTCAGACGTGCCCATTGACCCCGAAGAAGTGGATGCTGCTGGCAGCTTTGGGATTCGACAACAGCACTCGCTATATCTTGCTCCCATAAGGTTTATGGCGGGGAGCGCTGTATTTCGGCCTTGAGAAATTTGTTTCCCCTGATGGAAGACAAAAAGAGCTTTGCATCTTCTGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCCTTATTGGCTGCAGTTGATTATTATGTTGGCATGCACAGTGATATATTTGTCTCTGCCTCCCCTGGAAATATGCACAACGCGATGGTGGGACACAGAACATACAACAATATGAAGACAATAAGGCCAAACATGGCATTATTAGGCCAGCTATTCCTGAATAAGACACTGACTTGGCCTGAGTTTCAAGAATCAGTAGTTGAAGGCCACAAGAACAGACAAGGGCAAATTAGACTTCGCAAACCAAAGCAATCCCTTTATACATATCCTGCTCCTGATTGCATGTGCCAAGCTTGATAGTTACTACTGAGTACCATATAGATCTGTATTGTTTGGACCTCAAATTATTGTTTATTATGCCTATATAATAGTTAAATAAGATGCCACCCCTTTGTTTACTTATAGGAGTATTTATGTGTTACCACGTGAGTTTTACTATAGGGGTGGAATATGTGTACAATATATGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTAAACATATTTTACCATGTATGTCAGTTCTGTAG | |||||||||
gi|190769973|gb|FG159957.1|FG159957 AGN_RNC021xp04f1.ab1 AGN_RNC Nicotiana tabacum cDNA 5', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GGATTCCCGGGATGAACAGCTGGGCTGATGGTGAATGATCCTGTTCTACGTACACACAAGCCCCTGTCAGTAGAGCTGGGTCCTGGAATCTTGGGAAACATCTTCGATGGTATTCAGAGGCCGCTTAAGACAATTGCAAAAAGATCTGGTGATGTCTACATCCCTCGAGGGGTATCTGTTCCAGCCCTTGACAAGGACATACTCTGGGAATTTCAACCTAAGAAATTAGGCGAGGGAGATATCTTAACTGGTGGAGATCTGTATGCTACCGTCTTTGAGAACAGCTTAATGGAACATCATATTGCTCTTTCTCCTGATGCAATGGGAAAGATTACTTACATCGCTCCAGCTGGTCAATACTCTTTGAATGATACTGTTCTTGAGCTCGAGTTTCAAGGAGTCAAAAAGCAGTTCACTATGCTTCAGAATTGGCCTGTGCGTACACCTAGGCCGGTTGCCTCAAAGTTAGCTGCTGATACTCCTCTTCTTACTGGACAGCGCGTTCTTGATGCTCTGTTCCCTTCGGTGCTTGGGGGTACTTGTGCTATACCGGGTGCATTTGGATGTGGGAAAACAGTGATTAGTCAAGCTCTTTCCAAGTACTCTAACTCAGACACCGTAGTCTATGTTGGTTGTGGGGAAAGAGGGAATGAAATGGCAGAGGTACTAATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGACGTGAGAGTCTGTCATGAAACGTACCACACTTGTTGCTAATACTTCTACATGCCTGTGGCTGCTCGTGAGGCCTCATCTATACAGGCATTACTATAGCCGATATTTCAGAGAATGGGCTACATGTGGAGCATGATGGCAGATTCACATCTCGTGGGCGAGCTTTACGTGAAATTCAGTCGACTGCAAGATGCTGCAACAGTGGAATCTGCT | |||||||||
gi|190827116|gb|FG187084.1|FG187084 AGN_PNL211df1_b9.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CCGGGATAAGAATAAAAAAAAAAAAACGACTGACCATGATGAACGTTGACAAGAAAGAATCCGATCGTAACCTTCCAGAACTTTCTCCACCGTCCGTGGAGAACCATCCGCCGGCACCGGCAGCGACCCCGTCACGGCAACCACTGAAAGAGCCCACTGCGCCACCGCAGATGAAACAGACGCCGTCAACAACTGTCATGATTCCTTCTATTGATCCCAATGCCCTCTTTAGCGGCGGCGGTATTAGCTTTCTGACTGGAAACAAAAGTGCTAAGTTCAGCTACGGATATGCTAGTTTTAAGGGGAAACGGGCTTCTATGGAGGACTTTTATGAGACAAGGATATCAGAAGTCGATGGTCAAATGGTGGCATTCTTTGGTGTTTTTGATGGTCACGGTGGTTCAAGAACAGCAGAATACCTGAAGAACAACCTCTTTAAGAATTTGAGTGGTCATCCTGATTTTATCAAAGATACGAAGTCAGCTATAGTTGAAGCATTTAAGCAAACCGACGCCGATTACCTTAATGAAGAAAAAGGCCAGCAAAAAGATGCTGGTTCAACAGCATCAACTGCTGTTCTTTTAGGTGATAGATTGGTTGTTGCAAATGTGGGAGACTCTAGAGTCGTCGCTTGTAGAGATGGCTCAGCTATTCCTTTGTCCATCGATCACAAGCCTGACAGATCTGATGAGCGTGAAAGGATAGAACAGGCTGGCGGTTTCATCATCTGGGCAGGTACATGGCGTGTAGGT | |||||||||
gi|190775298|gb|FG171938.1|FG171938 AGN_RNC129xb22r1.ab1 AGN_RNC Nicotiana tabacum cDNA 3', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TCTCAAAGGGATGGAAAGGAACTCCTTAATTTGTTCAATTCCTAGCTGCATTTCCGTTTGCTTAGAATGGTGGTGTACGAGATTATGATTTTGCTTTGTGGGGTTTTACTAAATCCCAAGGCAACAGTTGCTTCAATGGGAATTTTAATTCAGATCACTTCATTAAATTTACATATTCCCATCTTCTCTTAGTTTCAGTGTTTCAACTAGAGTTGGCAATGAATTAGGGTGCTAGAAATCCGAACAAAGCCAAACTTGCAGCCATTGTAGGCCTTGCTGGCAGCTTCATATTGGGCTTTTCTGCTCTGTTTTTTGCGGTAACAGTAAGAAAAGTTTGGGCCAAGATGTTCACTCAAGATAATGAAATTCTTGCACTGACTTCACTTGTATTGCCGATAATTGGGCTTTGCGAACTTGGGAACTGTCCACAAACAACTGGATGTGGGGTGTTGAGAGGAACTGCAAGGCCAAAAGTTGGTGCGAATATAAATTTGGGTTGTTTTTATTTTGTTGGAATGCCTGTGGCTGTGGGGTAAGTTTTTATGCAGGATTTGATTTTGAAGGTTTATGGTTGGGACGTTGGCGCGCAGGATTTCCGTATGGTGAATA | |||||||||
gi|190770449|gb|FG149585.1|FG149585 AGN_RNC115xo18r1.ab1 AGN_RNC Nicotiana tabacum cDNA 3', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): AATACCGGCAGTAATTGGGAGGAAGGGTCATCACTTCAGTTTACTGATGAGAGTGAGGAGTCAAGGACGGTGCCCATTGACCCAGAAGAAGTTGGATGCTGCTGGCAGCTTTGGGATTCGACAATAGCACTCGCTATATCTGCTCCCATAAGGTTTATGGCGGGGAACGCGTATTTCGGCTTGAGAAATTTGTTTCCCGTGATGGAAGATAAAAAGAGCATGCATCTTCCGAGGAAAGAGCTCTTATCAAAGGAAAGGCTTCCTTATTAGCTGCAGTTGATTATTATGTCGGCATGCACAGTGATATATTTGTTTCTGCCTCCCCTGGAAATATGCACAACGCAATGGTGGGACATAGAACATACAACAATATGAAGATAATAAGGCCAAACATGGCATTATTAGGCCAGGTATTCCTGAATAAGACACTGAATTGGCCTGAGTTTCAAGAATCAGTAGTTGAAGGCCACAAGAACAGACAAGGGCAAATTAGACTTCGCAAAGCAAAGCAATCCCTTTATACATATCCTGCTCCTGATTGCATGTGCCAAGCTTGAAAGTTACTACTGAGATTTTAATGGTTTTGAGATTACCATATAGATCTGTATTGTTTGGACCTCAAATTATTGTTTATTATGCCTATATAATGTAGTTAAATAAGTTGCCACCCCTTTGTTTACTTATAGGAGTATTTATGTGTTACCACGTGAGTTTTACTGTAGGGGTGGAATATGTGTACAATATATGTATTACTCCTATGAAGAGTGCATATACAGATAGTAGTATTCTAGTCTAAAGATATTTTACTAATGTATGCCAGTTCTGTAGACTATTTAAAAGGGTGTTTCATTTTGGTATGTAGAGGTTGGTAATTATCAAATGC | |||||||||
gi|190142930|gb|FG644009.1|FG644009 TT-14_M17 K326 late senescent leaf library Nicotiana tabacum cDNA, mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): ATATATCATTCTTCTGAATAATACATGAGATATTATTACGAGCTCAATATATACGCATAATCATGGCTACTCTTCAATCAGATCAACACAAACAGCTAAAGGAAATATTCACGCGATTTGATCTTGATCGTGATGGCAGCCTCACTCAGCTAGAGTTAGCCGCTCTCCTCCGTTCACTAGGCCTCAAACCCGCAGGAGATCAAATCCACATATTGTTAGCCAACATGGACAACAATGGCAACGGATTCATTGAATTCGACGAACCCGTAAATGCCATATTACCCGACATGAATGCAGAAATCTTGATAAATCAAGAACAACTCATGGAGGTTTTCCGATCGTTTGATCGCGACGGTAACGGCTACATCACGGCGGCTGAGCTGGCTGGATCAATGGCTAAAATGGGACGTCCGTTAACGTATAAAGAGTTGTCTGACATGATGCAAGAAGCTGACACGAATGGTGATGGTGTTATTAGTTTTAATGAGTTTGCTAATATTATGGGAAGATCTGCAGCTGATGTTCTTGGCTTAACTGTCTCCTAATTAAATGGTCGTTTATTTAATTACCGGTATATTAGAGCGGTTTTCCGGTATGTTAATTATAAGGTGGTTTTTTTGGTCATTTTCATCTGACGTGGTATCATTAATTAACGTTAACAGTTGTCGTTGGTTGATCGACCGTTTGTAGAAGATGGATTTTGATGNNNTTAGATTCGGTCCAATTGTTGACCTTTGTGGNNGTGTTAT | |||||||||
gi|254658040|gb|FS426966.1|FS426966 FS426966 normalized full-length tobacco cDNA library Nicotiana tabacum cDNA clone TBK02GR007 TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAGTATTTTCCTCTAGAATTTCCTTCTCCCACCCCATCCCCATCCCCAACGTCAACTATTTCCTTTCTCTTTCCTCCACTTGCTCTCTTTTCCCAGTTCCTCACACGGTTTGTCTTTACATCACTAAATCCAAAACAAACAAAAAAACACAACTTCACACATCTTGCTTTCTTCTCTCCTTTCTTCTTTCTCTTTAATTTCTCACACACTATAGATATATTCTTCTGAATACTAAGCTACCATTACGAGTTCAATATATATCATTATTCTGAATAATAAGATATTATTACGAGCGCAATATATACGGCGTAATTGTGGCTACTCTTCAGTCGGATCAACACAAACAGCTAAAGGAAATATTCACGCGATTTGATCTTGATCGTGATGGCAGCCTCACTCAGCTAGAACTAGCCGCTCTCCTCCGTTCATTAGGCCTCAAAGCCACAGGAGATCAAATCCACATA | |||||||||
gi|156672137|gb|AM784041.1|AM784041 AM784041 seedling library, SL Nicotiana tabacum cDNA clone nt002308058, mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): ATGCGGCCGCTGCCTGACAGATCTGATGAGCGTGAAAGGATAGAACAGGCTGGCGGTTTCATCATCTGGGCAGGTACATGGCGTGTAGGTGGGGTACTGGCTGTTTCTCGTGCATTTGGAGATAAACTGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAGGAAGAAGAAATTGATGGTGTAGATTTTATAATAATTGCAAGTGATGGACTTTGGAATGTCCTGTCTAACAAGGATGCTGTGGCCATCGTGCAGGACATAAAAGATGCTGAAGCAGCATCACGTAAGCTTATAGAAGAAGCTTATTCAAGGGGTAGTTCTGACAACATCACCTGTGTAGTTGTTCGATTTGAGAGCGCATGAATAATGGACCTGATAAAAGATTCTGAAGGAGGATGTAGGC | |||||||||
gi|190880199|gb|FG187179.1|FG187179 AGN_PNL211dr1_b9.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 3', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CAACAGCATCAACTGCTGTTCTTTTAGGTGATAGATTGGTTGTTGCAAATGTGGGAGACTCTAGAGTCGTCGCTTGTAGAGATGGCTCAGCTATTCCTTTGTCCATCGATCACAAGCCTGACAGATCTGATGAGCGTGAAAGGATAGAACAGGCTGGCGGTTTCATCATCTGGGCAGGTACATGGCGTGTAGGTGGGGTCCTGGCTGTTTCTCGTGCATTTGGAGATAAACTGCTAAAGCCATATGTTGTGGCAGACCCAGAGATTCAGGAAGAAGAAATTGATGGTGTAGATTTTATCATAATTGCAAGTGATGGACTTTGGAATGTCCTGTCTAACAAGGATGCTGTGGCCATCGTGCAGGACATAAAAGATGCTGAAGCAGCATCACGTAAGCTTATAGAAGAAGCTTATTCAAGGGGGAGTTCTGACAACATCACATGTGTAGTTGTTCGATTTGAGAGCGCATGAATGGACCTGTTAAGATAAAAGATTCTGAAGGAGGATGTAGGCCTTGTAACTAGCTTATTTTTCCAACTTCGCCATACTTCTAGTGATGATTAAGCTTCTCAGATGGCCATGTCACTTGGAGTTGTGGTCGTGGGGATTTTTACTAATGGTCTCTGCTTATAGACTTGTAAATTTACTTTCAATTGTTGTGTGATGACAAAGTGTAAATCACGCTGGTATA | |||||||||