| mature miRNA: TGAAGCTGCCAGCATGATCTA species: Oryza sativa database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|88959986|gb|CI381864.1|CI381864 CI381864 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGGGACCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCA | |||||||||
gi|88553495|gb|CI483611.1|CI483611 CI483611 Oryza sativa (japonica cultivar-group) 3rd week immature panicle Oryza sativa Japoni TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): ACAAGAGAGGACTGGAGGCAGGAGGCCAAGTCATATCGATCAGGCTGGCAGCATCAAGTACACATTTGCAAGGCATGCATATTGCACACACACACATGCACATTTCTGGAGTATTAAACACATGAAAAGGGAGTAGAGTATCTACAGATGCAACACACAGAAGAGGGGGAGGAACAGCACAGCAGCAGATGAATGAATGAAGCGAAACGCAGGAGGAGCAACAGTACATGTCCTCGTCTTGGTACTGTCTGCATGCAGTCTTGGTGACGGTGAAGGCAGAGATATCGATAGTGTGGATTTGGGAGCCCAGGAGGAGATGGTACAGCTGACCCAGCAACCAAAGGATCCTTGCGAGATCTTCAGGAGGTTCAACTCTGTCGGCTTGCCCCACTCTTC | |||||||||
gi|58686089|gb|CK074776.1|CK074776 74693rsicem_13144.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CGGCACGAGGCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAACAAAGAGAATGGCCAAAGATGGTATATACATGTTAATGTAAATAAATGTCCAACACAACATGAGGCAATTGAGCCAACACAATTCAAGAGGAAAACTCCTGTAAGCATCTATATCTTTCTCTAGTTTACTCAACAACCCATTGCAGCAAGTGCTACCTGGGATAGAACGGTGGATGACGGTAGAAGGGATAATTAGGCTGTTGGGGATTAAACATACCCATAAATTGAGAAACTCCAACATTTTGTGCAAATGCAGCGCTCTGATTTCCAGGCCAGCCTAGTTGGGCAGCATAAGTGTGAGATATAGGCATTGCAGCATATGGTGAATGCCCAACAGAATCAACCTGCACAATATGCGGAACCATAGGTGATATGGAAGCAGGGATAGATGGTGTTGGCAGCTTGGTGGCGCATGGCCTTGGGCGTTTCTCTTGTGGCTTACTTTGCTGTAGTTGTTGCTGCTGCTGCTGTTTTTTCTGTGGCTTCTTATGCTGTGGTTCTTGAGGCCTAT | |||||||||
gi|87016511|gb|CI273721.1|CI273721 CI273721 Oryza sativa (japonica cultivar-group) supermix Oryza sativa Japonica Group cDNA clo TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CTTTTTTTTTTTTTTTTAATCTCAAACGTCCACACTTAAAATAACAAACGAAACAAGGAGCATGTCAACTGTCAGTTAAATCGACAAGCTGCACCTTCAAAGGGCAGAACTATTGAAAAGCTATTACAACAAAGAGAATGGCCAAAATTGTATATACATGTTAATGTAAATAAATGTCCAACACAACATGAGGCAATTGAGCCAACACAATTCAAGAGGAAAACTCCTGTAAGCATCTATATCTTTCTCTAGTTTACTCAACAACCCATTGCAGCAAGTGCTACCTGGGATAGAACGGTGGATGACGGTAGAAGGGATAATTAGGCTGTTGGGGATTAAACATACCCATAAATTGAGAAACTCCAACATTTTGTGCAAATGCAGCGCTCTGATTCCCAGGCCAACCTAGTTGGGCAGCATAAGTGTGAGATATAGGCATTGCAGCATATGGTGAATGCCCAACAGAATCAACCTGCACAATATGCGGAACCATAGGTGATATGGAAGCAGGGATAGATGGTGTTGGCAGCTTGGTGGTGCATGGCCTTGGGCGTTTCTCTTGTGGCTTACTTTGCTGTTGTTGTTGTTGCTGCTGCTGTTTTTTCTGTGGCTTCTTATGCTGTTGTTCTTGAGGCCTATTTGTCTTTTGTTGCTGCTGCTGCTCTTCTGGCTTAGTTTGCTCCTTCCCCATCTTCTCTTG | |||||||||
gi|66920436|gb|CX107284.1|CX107284 BI133P14 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TTGTGATATTTGGATTATTTGGATTCTATGGGTGTTGGTGTGGATATCTGCTATATCAGGAACTCCAGGTGAAAATGCACAAATATCAGCACATGAACTAGATTATATAACCAGGGGTCAGAAATTGGTAAAAACTCAATCTGGAGGTGAAAGATTACGAAAGGTCCCTCCTTTCAGCAAGCTACTCTCTAAATGGCCAACATGGGCTTTAATTTCTGCAAATGCTATGCATAGTTGGGGTTATTTTGTCATTCTTTCATGGATGCCAGTGTATTTCAAAACAATATATCATGTTAATCTGAGAGAAGCTGCATGGTTTAGTGCACTCCCCTGGGTCATGATGGCAGTTTTAGGCTATGTTGCTGGTGTTGTATCAGACAGGCTTATCCAAAATGGTACAAGCATCACTTTGACTCGGAAGATAATGCAGACAATTGGCTTTGT | |||||||||
gi|88490952|gb|CI428224.1|CI428224 CI428224 Oryza sativa (japonica cultivar-group) callus 50ppm CuSO4 for 1 week Oryza sativa Ja TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CTTTTTTGAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACTCAACCANATGATTGCCATGGAAGTCATCGTTAAATCTGAGGAACACTAACAA | |||||||||
gi|88447292|gb|CI533933.1|CI533933 CI533933 Oryza sativa (japonica cultivar-group) 5 days after pollination pistil Oryza sativa TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CTTTTATACTGAAAAGGACTACTACCATATATGTTCAGAAGCAACCTAACATGTGGTCTGGTTGGTGCCATCTTACAAGTAGTTGGCCCAAGGCCTACATAAAGCTCAATGGGGTTAGCCTAGGATCCTACTTAATGCATATAAATTCTTCACATAAATTAGAAACTACTGGGGGTGTTAACCCTAGGCTATTCTGGCGGACTGCCACGCAGGTAAAACCCTACCAGAAGCCACAGGCTTTTGTACACTGTATGGCACTTCATTGACTTGTTCACAACCATCTAGCTCAAGATCTATGTAGCGGACGTCCTGGACGATGCTGGCAGCATCAGATATTTCCTGCCTTGTACGTGTCTTTGCAGCGCGTTTCTTGGACTGGACCGTGCGTTCCTCAAAGTCGTCACAGTTGGTAAAGGTGTNGGTGACGG | |||||||||
gi|117249789|gb|CT863391.1|CT863391 CT863391 Oryza sativa (indica cultivar-group) cv. Guang Lu Ai 4 Oryza sativa Indica Group cD TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GCCTGCCTGCAGGCCAGTGAGACGACGGGGACAGAGTCTCCCCATCACCACGCCGCCGCCGCCGCCTCGCGAGATGCTGCCCGCGGGGTGGTGGTGACGTGGGGGAGCTTGTGCCGGCGGCGGACGCGCCGATCGACGGGCGCAGTTGCCGAGTCCGTGGGGGTTGGGGGGCGGTGTTGCTGCGAATTGTGAACGAGCTGACGCATAGGCGTTCTTATGTCCGCCTGGACTCTGGAGATTGCGGCTGTTGCCGGGGAGCTGCTCGTTCACATGCCGAGGCAAGACTGCGAGTTGCTCGCTCCCCAGAGCAGCATCCTCTGGTAGTCCTCGACGACGGCGAGCCTCTGCTCGCGGTCTTGACCTTGCCTGACTTCGATGATCCTGGCAGCTTCGCGCGCCTACTGCTAGGATCTTGGATTGACGGGTTCCCTCAGAATGAGCGCCCGCTCCAGTTCCTGCCCGCTCTCGGGTGGTATTGCGCGAAGAGGCTGCGACGTTTCCCTGAACCTGACCTGCGATTGCGACCGGAATTTGGGGCGGGCAAACGTGCCTCCTAACTAAATGCAGGGATGTTGCCCCGTTTGGGGAAATCTGGGGGGAGGCCGGCTTACCCCACCCGCGCGTCTGGGGCAGGTAGGCCCTCGGGAAGGGTTCCTTTCTTGGCACCTTGCTCTGGGGCCCCCTTCCCCCGCCGGTCCCCGGCGGGAGGCACCCTTTAAGGCCCCCACCAACGCCCCCCTATTTTTTGGGCCTCCTTCTTTGGGGACCCTGGGAGGGGCTCTCCCGTTTTTCTCTCATGAGGGGGCCTTGGCTTTTTGTTAAAGTCTCCCCCTCGCCCTATCACTTTTTTTCTGCTGGAAGGCACCAAGAGGGCGCTGCCCCAGGTGGACTACTTGCGTTGTTCCGCGCATGGCTAGGTCTGCATGTAGTACCCCTCCCCGGTCACGGCAAGGTTGAGGGGTGTCTTCACAAAACACTCCGCTCACACTATGCTGTGCGCGGTGGCTGCGGGGGCGCACCCTGCGTGGACTTTATGAACACTCTTTCGCTCGGTTTCTTGTGATCTCCCCGGGGGTGTGCGGGTTACTAGATATTCCGGCGTGGGACTCGACCAACTCCCTGATCACTGCTCTCTGTTGCTTTTGCTGTGTCCCTCCTCATGCTACGAACCCTGATCTTGGTGTCGATGGCACAGGTTCGTTCTAATTCCCGTACCTTTCATGTTCTTACGCTACTGCGACATA | |||||||||
gi|88836193|gb|CI371298.1|CI371298 CI371298 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACCTCAACCAATGATTGCCATGGAAGTCATCGTTAAATCTGAGGAACACTAACAATATCCCTGCCGACCAAAGTCTAACAGATAGTCGGTGCTCAACCCGAACGATAACCTCAACATGGATACTGGTGCAAAGGA | |||||||||
gi|88262143|gb|CI365719.1|CI365719 CI365719 Oryza sativa (japonica cultivar-group) callus Oryza sativa Japonica Group cDNA clone TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCCTGCCTCAACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACTCAACCAATGATTGGCATGGAAGTCATCGTTAAATCTGAGGACCAC | |||||||||
gi|88517272|gb|CI444926.1|CI444926 CI444926 Oryza sativa (japonica cultivar-group) callus UVB iradiated callus, 24hr after treat TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACTCAGCCAATGATTGCCATGGAAGTCATCGTTAAATCTGAGGAACACTAACAATATCCCTTAAGCTTTA | |||||||||
gi|86852136|gb|CI317879.1|CI317879 CI317879 Oryza sativa (japonica cultivar-group) shoot Oryza sativa Japonica Group cDNA clone TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GTCCAAAATTGTATATACATGTTAATGTAAATAAATGTCCAACACAACATGAGGCAATTGAGCCAACACAATTCAAGAGGAAAACTCCTGTAAGCATCTATATCTTTCTCTAGTTTACTCAACAACCCATTGCAGCAAGTGCTACCTGGGATAGAACGGTGGATGACGGTAGAAGGGATAATTAGGCTGTTGGGGATTAAACATACCCATAAATTGAGAAAATCCAACATTTTGTGCAAATGCAGGGCTCTGATTTCCAGGCCAACCTAGTTGGGCAGCATAAGTGTGAGATATAGGCATTGCAGCATATGGTGAATGCCACAGAATCAACCTGCCCAATATGCGGAACCTACGTGATATGGAAGCGGGATAGATGGTGTTGGCAGCTTGGTGGTGCATGGCTGGGCGTTTTCTTGTGGCTTACTTTGCTGTTGTTGTTGTCGCTGATCC | |||||||||
gi|88219894|gb|CI219454.1|CI219454 CI219454 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TTTTTTTTTTTTTTTTTTTTTTTTTGAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAAATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATCTGTTGGTGGCTTCACCGGACTCAACCAATGATTGCCCTGGAAGTCATCGTTAAATCTGAGGAACACTAACAATATCCCTGCCGACCAAAGTCTAACAGAT | |||||||||
gi|66922549|gb|CX109397.1|CX109397 RECm2293 A normalized whole-life-cycle cDNA library of rice Oryza sativa Indica Group cDNA cl TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): AGCGTAGGTCGGTCGGAATCCGGTGTGACCACGCGTTCGGTCGTGTTGGTAGCTTCGTTTTCTTCTTGTTTCATCAATCCAAGGAGTGTGGAAGGCCACACGCCAAGATTATATCTATGCTAATTTGATTAGCAGTAGGATTAATTCAGTGGCTAGCGTAGCTTGATTAGTTGGTTTAATTAGTTGGAGAGTAAAGAAGATGTTGGGAGTGTTCAGCGGCGACGTGGTGGAGGTGCCGGCGGAGCTGGTGGCCGCCGGCAGCCGGACGCCGTCGCCGAAGACGCGGGCGTCGGAGCTGGTCAGCCGCTTCCTCGGCGGCGCCGAGCCGGCCGTGTCCGTGCAGCTCGGCGACCTCGGCCACCTCGCCTACTCCCATGCCAACCAAGCCCTCCTCCGCCCAAGGTCATTTGCAGCAAAAGATGACATCTTCTGCCTGTTCGAGGGAGTCCTGGACAATCTTGGCAACCTGAACCAGCAGTATGGTCTGTCCAAGGGTGCCAATGAGGTGCTCCTTGTGATCGAGGCGTACAAGACGCTGAGAGACAGAGCACCTTACCCTGCTAGCTTCATGCTCTCGCAGCTCGCCGGCAGCTACGCCTTTGTGCTCTTCGACAAGTCCACCTCCACCCTCCTTGTGGCCTCTGATCCGGAGGGAAAGGTGTCTCTGTATTGGGGGATTACTGCTGATGGATCTGTTGCCTTCTCTAACAACATTGACCTGCTTAAAGGATCATGTGGCAAGTCACTTGCACCTTTCCCACAATGTTGCTTCTATTCCAATGCTCTTGGAGGCTTGAAGTGCTATGAGAACCCAAAGAACAATGTGACTGCTGTTCCTGCAAATGAAGAAGAGATCTGTGGTGCAACCTTCAAGGTTGAGAGCGCCACTGCAATCCTCACAGCTCTGCACTAGGATGATGTTTCGGTGTCCGGTCGTTGTTGGGCAAGAAAACCTTTGTACATGGTGGTGGTGTAACATAGTTGCAACTGATCTGTATCATCTTTTCATAAAAGAGAAGTACTGCCTGCATGGCAAGTGCTTCAGTGTTCTGGGTGTGTAGTATGATCTCTGTACCTTTGTTGTTCAAGCAGGAATGAACTCCAGGCCGGCTGTGATCAGTTGAATGTAGTTCTGTTGCAAATAACCTGTCCTTGTCAGTTGTTACTATGGATGTCTGTTTGATGTAGTGATGTTGTAGATCACTGCATTTCATGAACTTTGGTCAAGTAGCAAGAACAGAGTGCAGA | |||||||||
gi|88839825|gb|CI017590.1|CI017590 CI017590 Oryza sativa (japonica cultivar-group) green shoot Oryza sativa Japonica Group cDNA TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAATAATAGCTTCTAATTGCATTAATAGCATGCAACACCAACTTTTCCCTGCATTGAGAAAGGTAAAATGCATTCCTAAAAACAAAGGCAAAGGTAAATGATCCATCTGATTACTTATTCTGTTGCAGTAAGTTTACGATCATGTAGGCACCTTAGACCATGATGGTAGTTTCACATGCTGATAATATGCATCAGTTCCTAGTGTACCTGGATGTCACTTCCAAGTCCATGCAGCCCTTGAGTAATACAGTACTCCAAGTCCATGCAGTCCTTAGTAATACAGTACTGAAAATGCCAATCCAGGGCTGTATTCAAGATCTAAGACAGATCAAAATTCAAACGTTTCTCTGCTGTCCAAGTCAGATGCGTGGCTATAGTTATTTGTCATATCCCAGTAGGCCAACAGTGCTCGAGGAATTCCGCAGCTTTTAGAGCAGAAGTAACACTTCCGTACAGGCCTAGAAGTAAAGGCAACATCCACTGAGGAGCAGTTCTTTGATTTGCACCACCACCGGATCCGGGACCTGAAATAAAAGACAAAAAGACTAAACTTACCAGTTAACTTTCTGGTTTTTCAGAGCTTGGATCTGTAACGGCGCAGAACAGAAAAC | |||||||||
gi|88199759|gb|CI199609.1|CI199609 CI199609 Oryza sativa (japonica cultivar-group) Panicles mixture of one, two, three weeks aft TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CAGTCCCAGCTGTTTACACCGCTGTACCGTAAACAACACCCACTTGTCAAGCAAACGGTGTGTGTAGCAGAATGGCATAAGCAAGAGCTCAACATTATGAACATGATGCACTGCGGGTGGCACCCATACGCTCATGCCCAACCCCCAGACATGGCTGCGTCATCTGTTTGTTCACATGCCTGCGAACAGGAGGTGGCTGAAGCTTGCCCATGCTGGCAGCTTCACCAATGAAAGCACCACGCGTGTAAAGAGCCTGCTGGCATATGCTAGAACATTTGTGCAAGACCGGCCCGTACAACACCATAGCCATGGCGTATGCCTATAGTACATGCTGATACAACGCACATGCGTATGGTACAATCTAGAAATCAATATAGTACGGCCAACAACTCCCGCCCGTGACCAAGCCACCACACGCCACAGCAACAAAAGCTGGCCAGCGAACAATCAGGCATAGTCAGCATTCAGTGAGGGTGCAGTCACCAGTGGGTGCTGCAAAGCA | |||||||||
gi|88524835|gb|CI453787.1|CI453787 CI453787 Oryza sativa (japonica cultivar-group) 3rd week immature panicle Oryza sativa Japoni TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): ACAAGAGAGGACTGGAGGCAGGAGGCCAAGTCATATCGATCAGGCTGGCAGCATCAAGTACACATTTGCAAGGCATGCATATNGCACACACACACATGCACATTTCTGGAGTATTAAACACATGAAAAGGGAGTAGAGTATCTACAGATGCAACACACAGAAGAGGGGGAGGAACAGCACAGCAGCAGATGAATGAATGAAGCGAAACGCAGGAGGAGCAACAGTACATGTCCTCGTCTTGGTACTGTCTGCATGCAGTCTTGGTGACGGTGAAGGCAGAGATATCGATAGTGTGGATTTTGGAGCCCAGGAGGAGATGGTACAGCTGAGCCAGCAACCAAAGGATCCTTGCGAGATCTTAGGAGGTTAACTCTGTCGGNTGCCCCACTCTTCTTCTTCAGCTTGCTCACTTCACTTCANTTGTTGATTCGGCATCTCCTCC | |||||||||
gi|218482852|gb|FG953460.1|FG953460 MA_PA64s_01271 Mature embryo cDNA Library of PA64s Oryza sativa Indica Group cDNA 5', mRNA s TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TCTAAACTAGTGGATCCCCCGGGCTGCAGGATTCGAATTCGTTATTTGTCATTCTTTCATGGCATGCCAGTGTATTTCAAAACAATATATCATGTTAATCTGAGAGAAGCTGCATGGTTTAGTGCACTCCCCTGGGTCATGATGGCAGTTTTAGGCTATGTTGCTAGGTGTTGTATCAGACAGTGCTTATCC | |||||||||
gi|88470964|gb|CI408235.1|CI408235 CI408235 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (9.5min), a TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GGAGGCAGGAGGCCAAGTCATATCGATCAGGCTGGCAGCATCAAGTACACATTTGCAAGGCATGCATATTGCACACACACACATGCACATTTCTGGAGTATTAAACACATGAAAAGGGAGTAGAGTATCTACAGATGCAACACACAGAAGAGGGGGAGGAACAGCACAGCAGCAGATGAATGAATGAAGCGAAACGCAGGAGGAGCAACAGTACATGTCCTCGTCTTGGTACTGTCTGCATGCAGTCTTGGTGACGGTGAAGGCAGAGATATCGATAGTGTGGATTTTGGAGCCCAGGAGGAGATGGTACAGCTGAGCCAGCAACCAAAGGATCCTTGCGAGATCTTCAGGAGGTTCAACTCTGTCGGCTTGCCCCACTCTTCTTCTTCAGCTTGCTCACTTCACTTCACTTGTTGATTCGGCATCTCCTCCTCTATGTGATGCT | |||||||||
gi|89195431|gb|CI051544.1|CI051544 CI051544 Oryza sativa (japonica cultivar-group) cold treated callus Oryza sativa Japonica Gro TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TGAATCTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACTCAACCAATGATTGCCATGGAAGTCATCGTTAAATCTGAGGAACACTAACAATATCCCTGCCGACCAAAGTCTAACAGATAGTCGGTGCTCAACCCGAACGATAACCTCAACATGGATACTGCTGCAAAGGAATGAAATAAAAGATGCATCCAAAACCCAGCTGACCTTAAGCTTTAGAGAAGCTAGATGGTGGCGATGATAAAGTCTTACGAACTTAAGATGTATCCCATGGGTGAG | |||||||||
gi|86491255|gb|CI133888.1|CI133888 CI133888 Oryza sativa (japonica cultivar-group) Panicles less than 5cm stage and Panicles two TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TGAAACTCATAAAGTTTTATTGCATATTAAACAGAGTACATTGGAAGGGAACAACATTCCCTGAAACATCGCCTTGCAAAAAATTGACAACAAACGTTAAGGACCATTTTCCTGAAAGAAGGTAAAGATTGAATGATGAAAGCAAACCTCCAGATCATCTAATACATCAGTAGTGAATACAATCGTTGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCGCTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGGTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACTCAACCAATGATTGCCATGAAAGTCATCGTCAAATCTGAGGAACACTAACAACATCCCTGCCGACCAAAGTCTAACAGATAGTCGGTGCTCAACCCGAACGATAATCTCGACATGGATACTGCTGCAAAGGAATGAAATGGAAGATG | |||||||||
gi|88519003|gb|CI446657.1|CI446657 CI446657 Oryza sativa (japonica cultivar-group) callus 50ppm CuSO4 for 1 week Oryza sativa Ja TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATAAAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACTCAACCCAATGATTGCCATGGAAGTCATNGTTAAATCTGAGGAACACTAACAATATCCCTGCCGACCAAAGTCTAACAGA | |||||||||
gi|88830288|gb|CI076544.1|CI076544 CI076544 Oryza sativa (japonica cultivar-group) NAA treated callus Oryza sativa Japonica Grou TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATCGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACTCAACCAATGATTGCCATGGAAGTCATCGTTAAATCTGAGGAACACTAACAATATCCCTGCCGACCAAAGTCTAACAGATAGTCGGTGCTCAACCCGAACGATAACCTCAACATGGATACTGCTGCAAAGGAATGAAATAAAAGATGCATCCAAAACCCAGCTGACCTTAAGCTTTAGAGAAGCTA | |||||||||
gi|88512925|gb|CI440431.1|CI440431 CI440431 Oryza sativa (japonica cultivar-group) callus suspension-cultured cells treated with TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTTAAACACATATATTAGAGCAACAGATCAAGAGGGCAAGCCCCCGAACATCATCAACAGAGACAGCAAGATGCACAGAATAGAAAACTGGAACAAGAACACAAACAACCTCCTAAAACTAGACAGTGCAGAAGGCGCGAATCGANAGGGAGCAGCGGCAAAGCCATGACAATTGCAACCTTGGGTCTCCTTTAGCATGCAGACCGCTTGACGAACCGTTAATCCCCTTCGGTCGCCTCCACAGAAACTGCACAAATTGGAGATTTGCTGTTGAGCCGTAGATTTTGGTGGAAGCTTCACCGGACTCAACCAAACTTCACCACGGAGTTCTCCATTGAATCTGAGGAGCTTGAGCTCAACCCGAATGGNACACCCAGCGTGGATGCCACTGCCCGGAGACAAAGAGGAAGAAGGAT | |||||||||
gi|86430170|gb|CI082593.1|CI082593 CI082593 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TGAAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATCTGTTGGTGGCTTCACCGGACTCAACCAATGATTGCCATGGAAGTCATCGTTAAATCTGAGGAACACTAACAATATCCCTGCCGACCAAAGTCTAACAGATAGTCGGTGCTCAACCCGAACGATAACCTCAACATGGATACTGCTGCAAAGGAATGAAATAAAAGATG | |||||||||
gi|88479311|gb|CI416582.1|CI416582 CI416582 Oryza sativa (japonica cultivar-group) leaf of seedling gamma-irradiated (9.5min), a TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GGAGGCAGGAGGCCAAGTCATATCGATCAGGCTGGCAGCATCAAGTACACATTTGCAAGGCATGCATATTGCACACACACACATGCACATTTCTGGAGTATTAAACACATGAAAAGGGAGTAGAGTATCTACAGATGCAACACACAGAAGAGGGGGAGGAACAGCACAGCAGCAGATGAATGAATGAAGCGAAACGCAGGAGGAGCAACAGTACATGTCCTCGTCTTGGTACTGTCTGCATGCAGTCTTGGTGACGGTGAAGGCAGAGATATCGATAGTGTGGATTTTGGAGCCCAGGAGGAGATGGTACAGCTGAGCCAGCAACCAAAGGATCCTTGCGAGATCTTCAGGAGGTTCAACTCTGTCGGCTTGCCCCACTCTTCTT | |||||||||
gi|86528698|gb|CI168904.1|CI168904 CI168904 Oryza sativa (japonica cultivar-group) shoot and callus Oryza sativa Japonica Group TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTTAAACACATATTTAGAGCAACAGATCAAGAGGGCAAGCCCCCGAACATCATCAACAGAGACAGCAAGATGCACAGAATAGAAAACTGGAACAAGAACACAAACAACCTCCTAAAACTAGACAGTGCAGAAGGCGCGAATCGACAGGGAGCAGCGGCAAAGCCATGACAATTGCAACCTTGGGTCTCCTTTAGCATGCAGACCGCTTGACGAACCGTTAATCCCCTTCGGTCGCCTCCACAGAAACTGCACAAATTGGAGATTTGTTGTTGAGCCGTAGATTTTGGTGGAAGCTTCACCGGACTCAACCAAACTTCACCACGGAGTTCTCCATTGAATCTGAGGAGCTTGAGCTCAACCCGAATGGCACACCCAGCGTGGATGCCACTGCCCGGAGACAAAGAGGAAGAAGGATCCCAGATCCAGCCACCCTGATGCAGTGAAGAGCACAACCATCGACGAATGAACTG | |||||||||
gi|86431371|gb|CI084982.1|CI084982 CI084982 Oryza sativa (japonica cultivar-group) ABA: Abscic Acid treated callus Oryza sativa TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAACTCATAAAGTTTTATTGCATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATAACAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCAGATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCACCCAAGGGCCTCTTCAAACGTGCTTCCCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCACTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGATTCAACCAATGATTGCCATGGAAGTCATCGTTAAATCTGAGGAACACTAACAATATCCCTGCCGACCAAAGTCTAACAGATAGTCGGTGCTCAACCCGAACGATAACCTCAACATGGATACTGCTGCAAAGGAATGAAATAAAAGATGCATCCAAAACCCAGCTGACCTTAAGCT | |||||||||
gi|88513994|gb|CI441500.1|CI441500 CI441500 Oryza sativa (japonica cultivar-group) library (Kikuchi S) Oryza sativa Japonica Gro TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): GAAACTCATAAAGTTTTATTGGATATTAAACATAGTACATTGGAAGGGAACAACATTCCCTGAAACATCACCTTGCAAGAAATTGATCAAAACAAACGTTAAGGACCATCTTCCTGAAAGGTAATGATTGAATGATGGAAGCAAACTTCCACATCATCTGATACAGCAGTAGTAGTGAATACAATCGTCGGAGATCCGCGGCATTGCCGCGACGATTGCCCCCAAGGGCCTCTTCAAACGTGCTTACCATTTGACCTGCCAGCGATCCCTCCGGCTGCCTCCACGGATTTGGCANTAATTGAGCTTTGGAGTTGAGTCGTAGATATGTTGGTGGCTTCACCGGACTCAACCAATGATTGCCATGGAAGTCATCGTNAAATCTGAGGAACAATAACAATATCCCTGCC | |||||||||
gi|58680423|gb|CK069110.1|CK069110 70067rsicem_20608.y1 Oryza sativa cv. PA64s panicle ferile cDNA library Oryza sativa Indica G TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): CCCGGGCTGAGGAATCGGCACGAGGATGGTCTGTTGAAAACAAAATTGGTCGTGATGTGCAAAACCAGTCCCTTTTTAGTCCACAAGTTGACTCTTCATCCCTCCTNGTACAACATGGTTCCTAATCTGACTTCGAATGTTTCGGATGGCAACTTATCAACGATCCCTTCTGGATCAACTTATCTGCAGAATGCAATGTATGGTTGCTTGGACGACTCTTCTGGTTTATTGCAAAATACAGGAGAGAACGATCCAGCAACCAGAACATTTGTGAAGGTTTACAAGTCAGGTTCGGTTGGGAGGTCGTTGGACATCACCCGGTTCTCTAATTATGCTGAACTTCGAGAAGAACTGGGTCAGATGTTCGGCATTAAGGGTCAATTGGACGACCCTGATAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGATGTGCTTCTCCTTGGAGACGACCCTTGGGAGTCCTTTGTAAATAGTGTATGGTACATCAAGATACTTTCACCTGAGGATGTGCATAAGATGGGAAAGCAAGGAAATGATCCACGGTATCTGTCCTGAAGTGAGAGAACATGGTGCCATTTCTGGGCTTCC | |||||||||