| mature miRNA: TGAAGCTGCCAGCATGATCTA species: Sorghum bicolor database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|57807880|gb|CX609160.1|CX609160 ANR1_11_B10.b1_A002 Anaerobic roots Sorghum bicolor cDNA clone ANR1_11_B10_A002 3', mRNA sequ TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): ACAATCACTTATATCTTTTTTGAAATAGATTATGCTGGCAGCTTGATTTTATAAGAAAACCATAGATGATAGCGATGGGCAATACATATAGTCAATCATGAACAACCTTCAGTATCTTTTTCACTTCACGCAAACACACATTCGCTGACAACCTTGCAGTCACTGAAAATTATCTGAGCACCGGAGGAGAACCAGTCTCTGAGCTTATTCACTACCAGCTCTTGTTCATCTTCATTTTCTAGAAATTTATGTTTTACTAACGCTGTACTGGTTGATTCGCATTCCTTACAGCACTTGTCTTTCAAAACAACCGACTGTAAGTTAGGAGCCCGGTCCATCACTGCTCCTATAAACAATAGATGTTCTTCTGATGCATTGAAACCAATGATTTCAAGTTCTTTCAGTGGCAAATGCTTCGGGTATGGAAACTCTGGCACTTCCCATGACGCATTACTTCTTTTAGCACACAACTTAGTTACTTTCTCGTCCTGCTCACATCGATGGTCATACACCTCAACTTCAAGTATCTCGAGGGATGGCGCAACTTCAAGAAGATTTGTTGTCCACAAAAGCCCAAATCCAACAAAGATATCATATATGCACAATTTCCTCAAATTGCTAAATGCTGAGGAAAGTTGATGTTTTTCAGGTAGTAGCCAAATCTTTTGCCCGAGGAAATCCAATGATAAAGTATTTATACATGCCGCGCCACATAGAAACTCACTTAACTTAAATTGTTCTTGATGAGGTGGCATGGCTGAAA | |||||||||
gi|34512053|gb|CF483184.1|CF483184 POL1_12_G03.b1_A002 Pollen Sorghum bicolor cDNA clone POL1_12_G03_A002 3', mRNA sequence TGAAGCTGCCAGCATGATCTA EST sequence (targeted fragment marked with yellow): TTTTTTTTGAAACGGCCGGCAGGAGCTCTGCCCGGCATATATTAATAGAGAAGTAGAGCGCTACTACTTTTGCACATAATAAATCATAGTCAGCCTATCTTAACTACACAAGATGCTCTTCTGCATATAGAATATGGATGCTTTGTTCTTTGGATATACTTTACCCATTGGACGAAAATCCGGCCGAAATTCTACTCTGTACATCTTGGAAATCGATCTTCCTGGCAGTTTCAAGCAAAGCTAAAAGAAAAGGACATACAAGGACCAAGTCAAATTGCAAGACAATTGTAGAAATTTTACAGCATCGTAAAAACTAGAAACACTGCAAATGGATTACTATTTATTCAGAAAACACTATTTTCACATAACATATACCAAGCAACCTAATCTAGATTTGCAAGATGATGTTCATTCATGGCAATGCATGGAGCCAAGTGAAAAACTAATTATTTCAGATATTCTAGGAGAAGTTCCTTTGATGATTGGGTCAGTATACCAAACTGAATGACAGAGGACTATATATGAAGTGCTGGAACTAAACCTGGGAGTATGGACTAACCAAATCCAGGAGCACCACTGGATAGATATGGTAACCTGTATACATCAGCCTTTTCCAATTTCAGCATATATCTGCTTCAATGAAACGCTC | |||||||||