| mature miRNA: TGAAGCTGCCAGCATGATCTG species: Citrus sinensis database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|55401823|gb|CV717229.1|CV717229 UCRCS08_0008J20_f Parent Washington Navel Orange Callus cDNA Library UCRCS08-1 Citrus sinensi TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): TTAAATTGATGAGAAGAACGCGATCTTCATCATGATTCATGAACAAGCCCAAAGAACAAGAAGCATCAAACGACGACTAATCTCTTTTTAAAAGATCATTGCCAGAAAATGGTCAATTTACGACCACGGGACTATGCATCCCATAAATCAGTATCTCTAATCAAATGAAATTTGTCCCAACAATGATGATCCAAAGAAGCAGAGGGAACTGAAGGTTTGGTAGTTCCCCTAAAAAACAACAAGAGGGATCCAAATAGAAAGCACACCCACAAGTCGGAGAAAACCCACACCAAATAAGATTTAAATAGAAGGAAGAATAACATGTTCAAGCTTCTGGAACAGAGGCTGCTGCACGCTTCATTGAAGCGGATTTGATAAGGTGGTTGTAGCTTCCTTTTTCCTTGAACAATTGGGAGAAATGATGTTTGCAATACAAGATGCCTTCCAGGGCTGCATAATTTGATGGGCTAATGGAACAACCACCATGCGAGCACTTGAAACATGTCTTGTGATAGGCCTGGTTTTCCACTGCTACCTTCTCCAACGGATACACTGTTTTACTGCAAGAAGCACATTTTTCTTGGGTCCCAGAGAACATGCTGGCAGCTTTGCTAGGCGACCTTGTCAGCTCAGGAGTTAACTTCTCAGCTGACTTTGCAGGTGACTGGAAATTCTTGTTGAAGTTACCCGACTCCTTGAAAAGCTGCTCAAAGTGAGGCTTACAGTAAAGAACACCTTCCATGGATGAGTAATTGCTCAGCTTGAGTGTGCCTTTGCAGTGAGAGCACTTGAAGCAAGACTTGTGATAAACAATCC | |||||||||
gi|229048729|gb|GO242574.1|GO242574 1222 'Cara cara' navel orange fruit cDNA library Citrus sinensis cDNA clone 1399 5', mRNA se TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GAAAGGACACATCTTTGGAGGTTGATAGCGTTGGCACGATTTCGGCATCTCTTGTAACATATGCTTCTATCCAAGCTTTAAAGCCAGACCTGATCATAAATGCAGGTACTGCTGGTGGCTTCAAGGCTAAGGGAGCATCCATTGGTGATGTGTTCCTCATATCTGATGTTGCCTTCCATGATAGAAGGATACCTATCCCTGTTTTCGATCTGTATGGAGTTGGTCAACGGCAGGCCTTCTCAACACCCAATCTCTTGAGGGGACTTAACCTAAAGGTTTGCAAATTGTCTACGGGTGATTCTCTAGATATGTCCTCACAAGATGAAACATCAATTACTGCAAATGATGCAACTATTAAAGACATGGAGGGAGCTGCTGTTGCATATGTGGCTGATCTTTTTAAAGTGCCTGCAATATTTGTGAAAGCTGTAACTGATTTAGTGGATGGTGATAAGCCAACTGCAGAGGAATTCATGCAAAATCTGGTTGCAGTTACTGCTGCACTTGAACAGTCAGTCTCCCAAGTCATTGATTTCATCAATGGAAAGCGCTTCTCTGAACTTTGACACGCTTGGTCCTGACTTTTTATTTTCCTGGAAAACATAATTCACAAAATATTCATAAATCATAGTTCCATAAACAACCAGATAAGGAGCTGTTGCTTGATTGTTATAGTTTGAGTAGGTATGCGTTTTAGTTAGCCATCCGCTCAAAAGAAACTTCTTGTAATGGTAAATTCGTATAGTTCGAGCTAGATAATAAAAATAAAAACAAA | |||||||||
gi|63071671|gb|CX302817.1|CX302817 C08024E07SK PhyRootSw1 Citrus sinensis cDNA clone C08024E07, mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): CTCGTGCCGAATTCCGCCAGCGTGGCTGGAATGCGCACTGCAGCGGTGCTTTCCAGCGAACCAAGAGAAAATAAACCTTGCGGCTCATCGCCAGCGACAACGCTCCGCGCTTCATCCACTAACGCGAGAATTTGTTGGCTATAGCGTAAAAAGTTATGCCCGGCAGGAGAGAGACGTAAACGCTGATTCTCGCGAATAAACAGATCAACCCCCAGTTCTGTTTCCAGCTGGCGCAGACGGGTAGTGAGATTCGACGGCACGCGATGCACTTTTGCTGCAGCCTGGGTTATGCTGCCAGCTTCGGCAACCGCGTTGAACATCTCCAGTTGGGTCAGATCCATAGCATTCTCGATTCGTGAATAAGTGGCTTAATATTATTCATTTTAAAGCAAGAGTAAATCTGCGTATCTTCATACCATGACTCATAAAGGAGATACCCCGATGACCATTACTCCGGCAACTCATGCAATTTCGATAAATCCTGCCACGGGTGAACAACTTTCTGTGCTGCCGTGGGCTGGCGCTGACGATATCGAAAACGCACTTCAGCTGGCGGCAGCAGGCTTTCGCGACTGGCGCGAGACANATATAGATTATCGTGCTGAAAAACTGCGTGATATCGGTAAGGCTCTGCGCGCTCGTAGCGAAGAAATGGCG | |||||||||
gi|188231813|gb|EY659179.1|EY659179 CS00-C1-101-004-C07-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 1 of 2) TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): CTGAACTTTCCTTGACCTCCATCTCTAGGGAAAGGCCAGATCATCTGGCAGTTTCACCTATTGATGGTAGCATGGCCAGAAACCCTAATTTCTTCTCCTCCACCAGATCGTTCTCAACAAACCCAGTAGGTTTTGGCAGATGAAAAACCCTAGAAACAGTTTGGGCAACGATTCTGTCCAACATTTTCAAGATCTTCAGTGTCACCCACATCCTCGAAACGTCACCTATTTGTTTCTCATAAAACTACTTCGAGGGTTTTCAGGTAATTGTGTCTTGATTCTTTCAAGAGTAAGAGAAGACGTACGGTGGGTGGGCTTCTTGATAGAGTTTGTTACATGCCATTAATGGGGAGAGTTTGCTCGTTGCTCATGGAACTTCAAGAATTTGGCTTCATTATGTGGCCATTATTATGCATGATGCTTTAAAATTTTGGTATCATGAGCGTTTTGGCAAAAGTTGTGAAGCAAAAGCCAAGAGCAGAGCAGAAATAGTTTAATTTTAAAGTTTATGGTAAATGTTGATATAAACTTGCCTAAACAAGGATTGCATATGATAAATAAAGAGAATCTTTAATTTCAAAAAAAAAAAAAAAAAG | |||||||||
gi|71597639|gb|DR908390.1|DR908390 USDA-FP_16518 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_E12 5', mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): GGACATTTGTCAAGGTCTATAAATCGGGTTCGGTTGGGCGCTCACTAGACATCTCCCGGTTCAGCAGCTATAATGAGCTGCGGGAAGAGCTGGGTCAGATGTTTGGAATTGAGGGGAAGTTTGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGACGTGCTTCTCCTTGGAGACGACCCATGGGAGGCATTTGTGAGTAATGTTTGGTATATCAAGATACTTTCACCGGAGGATGTGCAGAAAATGGGTGAGCAAGGGGTTGAGTCCTTCAGCCCAAGCTCAGGTCAACGGGCAAATAGCCGTGGCAATTGCGGTCGTGATCCTGTTGGTTCGCTTGAATATTGATGTTAGATAACTCTATTACATAATGCCACGAACTGTGTGTGCAACCCCCCTGTGTCTCCAGGTTTATTGTTACCAGATAACTAAAACCCACGTTTCAGACTAGACTAGTAGTTTAATGATGATGATGCCTATGTACGATAAATATAATACTGAAGTCGATTAGATAACTAAACTACGTTGCAAATTGGAACCTATTTCTTTTGACCGTGTTTTGGTTGTATTAATATGAAAGTGCTGTCATTGCCTTAGTTAATACTGCCAATGTTGTGCACTGACCCTTGAGTTG | |||||||||