| mature miRNA: TGAAGCTGCCAGCATGATCTG species: Cycas rumphii database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|158967200|gb|EX920949.1|EX920949 iy84d12.g1 Cycas ovule - normalized (NYBG) Cycas rumphii cDNA 3', mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): TCAAAGTAAATAACATCAAGCATTTAACAAAAATTATAAATATATACGGCAATAAGAAATGGTAAATGACACGCAAAATTTGTGCATTAAGACATCATACCATTTCCTGTTGAATGCGCTCAGAAAATTAGTCAAATCTCTAAAGCTGCAAATAACTTTACAGTTCTAGAGGGCTTCAAACAAATTTCTTTTGCATGACATATCTGTTTACAAAAGCCAAACAAAAGACGTTTTGGGCAGCTTACACATCATCACATGCTGTTAATCTTGCAACTCAATGAACGCTACGGGACTTCACGGGCAGGCTCCAAAGTACCAGTTTAAAAGCGATGAAAAGGACCCTTCATTTAATTGTATCGCATCTACTGCTCCCAAACTTCATGGTGTGCCTCCACGCGGGCTTTGCGTTATTAACTCCAGAAGCGAGTGGTCCACGAAACCATCATTTCCCTCCGAACCCCAAGCTGCGTACACCTGCATTTAGCGTCAGGGACATCCCTATTAACATTTAAATAAATAAATAAACATTAGACATCATCATTTCAACATGGACAGACGCTTGATGAATCTGAAACTCCAGAGGTGCTGCGTAAATTGTTATAATAATGTCTGCAAGGGAGTTGCTGAGACTGCCACATGATCTGGTACCCAAAAGCAACTGGCGAGAGCAATATTAACCAGATCATGCTGGCAGCTTCAGCCTCTCCCACGAACACGAACAAGATGCTCC | |||||||||
gi|66986045|gb|DR062479.1|DR062479 iq18c01.g1 Cycas ovule (NYBG) Cycas rumphii cDNA 3', mRNA sequence TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): CTTGATGAAACAATGGAATGTGTTTTTGTAGGCTTTAGAGTCTCCCATCATTCTTGACTTCACCACATCAACTGGGGAGCCAATACAAACTGCGAAGAACCCAGCTCCAAGTCCCGATAATAAATGAGTAAACACATTGTCAGAAAATCCTGGCAGCTTCAATAGAGTCTGTTTCACTTGATCATAACTGGCCAGCTCTGCAGCATTAATTATAGCATTGCGTGCCACATTTGGACCAAGTCCTGTCCACAGAGCACCTAGCCCTTCCTCTCGGACAATTGTAGCATATGCATTCATTGCCCCTGAATATCGCCTTGGCACTCCAGGTGGTAACTTCCCTTCAGCTTGTAGTCTCACTTTCACAAGATCAGTGGGGCTAGCCACTGTGATTGCTATGGCACCTGTTGTAAGGGCTGCAAGAATCTTCTTATGTAAAGGAACGTCCCCAACAAAATCTTTTCCAACATACAAGCTTTTAACCGGTTCATAAAGTCCAATCCGGAGTCCTCCGAACAGACACTGCCGATGCAGGCCGGGGACTATACCCTTCCAAAGAGCTGTTAAGCCTTCTTCTCTTGCGATGGTAGCAACCTTTGGATCCA | |||||||||