| mature miRNA: TGAAGCTGCCAGCATGATCTG species: Ipomoea nil database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|27254062|gb|BJ572234.1|BJ572234 BJ572234 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm20b13 3', mRNA TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): TTGGGGCCCCCNTTNGTTNAGNGGGGAAANNCNANGGTTTNTTTTTTTTAAAANNNNTTTTTTTTTTTTTTTTTTTTAATTTGGGTTTTAGGGGTTGGGAGAGAGGGGTTTGGAAATGAATGCGCATGGAGGCGATAAAGAATCTGTGTTTGAGATAGCGGTTGTGGTTCCAAAGAAACAAGAAGATCAGAGGTTTGAGTGTGTTGAGGTTCTTGTTGATGAGTTCCACAAGGTGGGATTCCTTGTGGACAGAGTTGTTGGCCTTCAAAATGAATACATCAAGTTGGCAGCTTCATTACATGTTTTGGGACTCACTGCAACACGAGGTTCATATCGTAATAAAAGATTTATTCCGCTGTTTCTTATGTTTTTTTCCAGCTGAGCGAGCAGCTTAGTCCATGAAAACGAAAACCCGATATATTGTGGGAAATTTTAATCTTGTGAAATGCTTTTCAATGAANTNGGACCAGTTAAAACATAT | |||||||||
gi|27249911|gb|BJ568083.1|BJ568083 BJ568083 Ipomoea nil mixture of flower and flower bud Ipomoea nil cDNA clone jm1e17 3', mRNA TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): TTGGAGTGGCCTTCCCTGCAAGAATCTAGCGTGTTTGAATACTAAGAAACTGAACAGAGATTGTGCTGGCTGCTTCGACATACTCAAAGGATATGAAACTCAGAAGTATGTTAAACCCAGGGGGAAGAACGATTTCTTGATTGACGATGTCTTAGCAATGGGGGGTAATGGAGCAATCAGGATTGGGTTTGATATCGGCGGCGGGTCTGGAACTTTCGCCGCGAGAATGGCGGAGAAGAATCTAACGATCGTCACTGCAACTCTCAACATCGACGCACCTTTCAACGACTTCATAGCCGCGAGAGGCCTTTTCCCTCTTTACTTGAGCTTAGACCAGCGATTCCCCTTCTACGACGCCGTCTTTGATCTGGTTCACGCCGGCAGCGGCCTGGACGTCGGCGGCCGCCCGGAGAAACTGGAATTCTTGATGTTCGACATTGACCGAATTCTCCGGGCCGGAGGATTGCTCTGGCTGGATAATTTCTTCTGTTCTAATGATGACAAGAAGAATGCTTTGACACGGTTGATTGAGAGATTTGGGTACAAGAAGTTGAAGTGGGTCGTTGGTGAGAAGATTAACGGTTCCGGAAAGTCCGAGGTTTACCTGTCAGCTGTCCTAAAGAAACCAGTCAGAGCATGACAACAAACAACCTAGTACTACCTCCGAGAACATCGGAGATCACACATTATATGCAAAGTTCCATTCTTTGTTCAGAATATTGTCAATTTCTTTACACCATAG | |||||||||
gi|74409055|gb|CJ763875.1|CJ763875 CJ763875 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf31o16 3', mRNA sequ TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): TATCTGCAGAGAGACGATCGATGGAGTGGTTCTTGTTAGCCGTGACGCCATTTGTGCCTCAATAAAGGACATGTTTGAGGAGAAAAGAAGCATTTTAGAGCCTGCTGGTGCACTTGCTCTTGCTGGAGCCGAAGCATATTGCAAGCACTATGGCCACAAAAATCAAAATGTTGTTGTAATCACTAGTGGAGCAAACATGAACTTTGACAGGCTTAGATTGGTAACTGAACTCGCAGATATTGGTAGGCAGCAGGAAGCCGTGCTCGCAACTTTCATGCCAGATGATCCTGGCAGTTTCAAGCAATTCTGTGAACTTGTAGGACCAATGAACATTACTGAGTTCAAGTGCAGATGCACTTCTAGTAAAGAAAAAGCTGTGGCACTATACAGTGTTGGTCTTCACTTAAAAATAGAACTTGAGGCAATGATGGAGAGGATGTCATCTGCTGGACTTTATACTATTGATCTTACAAATAATGACCTTGTCAAAGATCATATAAGGCATTTGATGGGAGGGCGGTCCAATGTTGAAGATGAGGTGTTATGCAGATTTGTGTTTCCAGAGAGGCCAGGTGCCTTGATGAAGTTNTTAGATGCNTTCAGCCCACGCTGGAACATTAGTCTGTTCCATTATCGCTCNCAGGGAGCAGAAGGTGCGAATGTGTTGGTGGGTATCCAAGTTGCAGACAGCGAGCTTGGTGAGTTTNAGGATTGTGCACACAACCTNGGATNTGAATACGCAGTGGAAAACAGCAATAGGGCTTTCCAACTCC | |||||||||
gi|74407799|gb|CJ762619.1|CJ762619 CJ762619 Ipomoea nil shoot 8-days old seedling Ipomoea nil cDNA clone jmsf29e09 3', mRNA sequ TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): CTTATAGNNTAGGNTTTTTTTTTTGCTAGTATGGAATTACAAGGGCATGCTTGTAATTTTGCCGTGCACCTCTAGCAGTTGAAGCTGCCAGCNTGATCTAAACTTGCCTCCTTTTTTGGGTTGAGGAAAGATCAGATCATGTGGCAGCTTCNCCTGTTGGTTGGTTGCNCGAAAAAACCTTAATTTCTCACAAACCCTACTTGCCTAGATAATTTTGTTCCCAACCNTGAAAAGGGTAATGTTTTTTTTTTGCTTTTTCCTTTACTTTCTTTATAATCAAGATCTCGGTTTTTCATGAATTCTATAGCCCTCTATTGTTCTTCTGCAATTGTGTGGATTGAATTGATGGAAACAATTAGGGTTTTGTATGTGTGTTGGTGGGAGAAGGGTAGATCTGATTCTTTAGATGTTTAGAAATCATAATTTGTATGTGTTTTGATGTTTTTTGTTATTCTGTGCATGATTTGAAGAATCCTAGAATGTTTTTGGTGACTGGTGAGCCATAACAAATTCTGAGAAAAGCCCAGATTTGTTTACATAGTTTTATGCTAA | |||||||||