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mature miRNA: TGAAGCTGCCAGCATGATCTG
species: Manihot esculenta
database: miRNEST
The numbers on the right side of the alignments show a score calculated for them.
When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5.

Predicted miRNA targets
gi|119009914|gb|DV447516.1|DV447516 CV01022A1A08.f1 CV01-normalized library Manihot esculenta cDNA clone CV01022A1A08.f1, mRNA s 

TGAAGCTGCCAGCATGATCTG
||||.|||||| |||||||||
ACTTTGACGGT-GTACTAGAC

EST sequence (targeted fragment marked with yellow):
ATCTTAGCTTCTCTTCCTCGTTGAGAAAAGATCAGATCATGTGGCAGTTTCACCCGTTGTTGGTCGTACGAGAAACCCTAATTCCACTCATAACCCTTATTTCCACTGTTATACTTACAAGGGCTATTAGGGTTTTCCTTGTTCAATCCCTAGAAAAGGTATGTGATCTTCTTGTACATGACATAGCCGCATCTGGGTTTTTTGGGTTTGCCTTTTCATGTATGTTTGTACAATTTATTGCTTCTTTTGTGTATTTGGTGCATTGATTTTAATGTTTCTTCATTTTTATTTTGTCAAGTACTCTAACTTACGCAGAAAAGTGTTTGCTCCTTGGCTTGTTAGGACTGTCAGTGACAGTATTTTTGCGTCTCGGTGCAGTTAAATGATTTCAAGATCTCCCATGATGCTTCGGTGATTGAGCCTTGACATTCTTTTAAATTGCCGTACATATTAATTTTGTTAATAAATTGGGTATGCATCTTCTATTTTCCTGGGTAGGATTCTAGCAAAGAATTTTCCTCCTGTTTACGATCTTCCAATCTTATATCTTTTAGTTTAGGGTTTTTATAATACTCTGTACGGTTTGGACCAATAAATTCTGCTCCAGGTTTCCAAATAAAAAAAAAAAAAAA


gi|119006617|gb|DV441583.1|DV441583 CV01004B2B09.f1 CV01-normalized library Manihot esculenta cDNA clone CV01004B2B09.f1, mRNA s 

TGAAGCTGCCAGCATGATCTG
  ||||||||||| ||||||.
TGTTCGACGGTCGGACTAGAT

EST sequence (targeted fragment marked with yellow):
TGATTCTTCTGGACTCTTACTACCTACAACNNNNNCAAGATATACCTCTTCAGTGGATGCGGATGTGTCCTCAATGCCACTGGGGGATTCTGGGTTTCAGAATTCCATATATGGTGGCATGCAAGACTCTTCTGAAATATTGCCTAGTACAGGGCAAGTTGACCCACCAACCCCAAGTCGAACATTTGTCAAGGTGTATAAGTCAGGGTCGGTCGGGCGATCACTGGACATTTCCCGGTTCAGCAGCTACCATCAGTTGCGAGAGGAACTGGCTCAGATGTTCGGCATTGAGGGGAAGTTAGAAAACCCTCATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAATGATGTGCTTCTCCTTGGAGATGACCCATGGGAGGCATTCGTCAACAACGTTTGGTATATCAAGATACTTTCTCCAGAAGATGTACAAAAGATGGGGGAGCAGGGGTTGGAATCCCTCGGCCCAAATGTAGGTCAAAGGATTGAGTAATGATGGGGCTGGAGACTTTGCCTCTAGCTTGGAGTTGATACTGCGCGGTTGAGAGCTGTATGACATCCTTCCACGCTTGCTCTCTAGGGTCAGGGATAAAATTTACCAGGTTTCCACTCCTTCCACGCTGGCTCTGTAGGGTCAGATAAATTTTACTAGGTTTT