| mature miRNA: TGAAGCTGCCAGCATGATCTG species: Saccharum officinarum database: miRNEST The numbers on the right side of the alignments show a score calculated for them. When calculating the score, a mismatch is given a score of 1, bulge: 2, and wobble: 0.5. |
| Predicted miRNA targets | |||||||||
gi|36004727|gb|CA279299.1|CA279299 SCBFLB2092D09.g LB2 Saccharum hybrid cultivar SP80-3280 cDNA clone SCBFLB2092D09 5', mRNA seq TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): AGTTTATGGGCTCACAGTCGATGTCTTTTGGGGGCTCAGTTTCGCTTAACTCACCCACTAGCAAAGATGGTTCTGCTGACAACAAAATTGGTCGTGATGTGCAGAACCAGTCCCTTTTTAGCCCTCAAGTGGACTCTTCCTCCCTACTGTACAATATGGTACCTAATCTGACCTCAAATGCTGCGGATAATAATATATCAGCGATTCCATCTGGGTCAACATATCTGCAGAGTCCAATGTATGGTTGTCTGGATGACTCTTCTGGTTTATTGCAAAATACAGGAGAGAATGATCCGGCAACTAGAACTTTCGTTAAGGTTTACAAGTCAGGATCAGTGGNGAGATCCTTGGACATCACCCGGTTCTCTAATTATGCTGAACTTCGAGAGGAACTGGGTCAGATGTTCGGCATTAAGGGTCAGTTGGATGACCCTGATAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTGCTTCTCCTTGGAGACGACCCGTGGGAGTCATTTGTGAATAGTGTATGGTACATCAAGATACTTTCACCGGAGGATGGGCATAAGATGGGAAAGCCAGGAAACG | |||||||||
gi|36051036|gb|CA292444.1|CA292444 SCRLFL8024C12.g FL8 Saccharum hybrid cultivar (mixed) cDNA clone SCRLFL8024C12 5', mRNA seque TGAAGCTGCCAGCATGATCTG EST sequence (targeted fragment marked with yellow): CCAATCCAAATTTCAAATGCACACATGATCCAAATACCAATCCAACACATACAATAGAATCCAATACATGCATATATAATATGCAACTGATTCCAATTGCAATACAATCCAACTCCATCCAAGTGTCCAACCATTACTCTAAAAGGCTTACTAGCTCATAGTCCTAGACATAACATGATAAGTTCCAGCACATACTTCTAACCATCCAATATAACAAGTGAGGATAATGTCATGTGTATCAACATACACCTACACTAGTGCACATAAACCTACATGTAATTTCCAGTTCATGATGGCAGCTGCAAATTCAGTTCATGATGGCAGCTGCAAATTCAGTCTGGGCAATTTTCCCAAGGTCTTCAACCAAAGTGGATGTAGGCGGAGGAGGAGGAGCTCCCTGGCATCCGAGGTCACCATGCCCCGCATCGATCCGGGCTCCGGGCCCTATGCCACCAATAGACTTCATTACAACATATGTGTTCAAAGCGCTAGCCTTCTCGGAGCCAAACTTATATCCCTGTAAACC | |||||||||